Wall clock time and date at job start Tue Mar 31 2020 18:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47281 * 2 1 4 4 H 1.08999 * 109.46893 * 304.99911 * 3 2 1 5 5 C 1.52998 * 109.47129 * 64.99546 * 3 2 1 6 6 C 1.52995 * 109.47318 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47254 * 300.00184 * 6 5 3 8 8 C 1.53000 * 109.47309 * 59.99368 * 7 6 5 9 9 H 1.09001 * 109.46660 * 60.00673 * 8 7 6 10 10 N 1.46494 * 109.47154 * 180.02562 * 8 7 6 11 11 C 1.34777 * 119.99928 * 275.00273 * 10 8 7 12 12 O 1.21359 * 120.00374 * 359.97438 * 11 10 8 13 13 C 1.49314 * 120.00044 * 180.02562 * 11 10 8 14 14 O 1.21408 * 119.99834 * 359.97438 * 13 11 10 15 15 N 1.34773 * 120.00432 * 180.02562 * 13 11 10 16 16 C 1.40289 * 120.00449 * 179.97438 * 15 13 11 17 17 C 1.40727 * 126.09682 * 359.97252 * 16 15 13 18 18 N 1.30874 * 108.37237 * 179.77757 * 17 16 15 19 19 N 1.40059 * 108.43766 * 0.38281 * 18 17 16 20 20 C 1.37295 * 126.05604 * 179.88019 * 19 18 17 21 21 H 1.07997 * 120.00344 * 179.69126 * 20 19 18 22 22 C 1.39012 * 119.99781 * 359.41092 * 20 19 18 23 23 N 1.31281 * 120.00057 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99760 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47298 * 60.00271 * 24 22 20 26 26 H 1.48508 * 109.47224 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47384 * 300.00275 * 24 22 20 28 28 C 1.35785 * 126.10220 * 179.97438 * 16 15 13 29 29 C 1.52999 * 109.46999 * 184.99512 * 3 2 1 30 30 H 1.09002 * 109.46798 * 60.00648 * 1 2 3 31 31 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47782 * 300.00464 * 1 2 3 33 33 H 1.08996 * 109.47782 * 239.99535 * 2 1 3 34 34 H 1.09010 * 109.46996 * 119.99629 * 2 1 3 35 35 H 1.09006 * 109.47448 * 59.99984 * 5 3 2 36 36 H 1.09005 * 109.47265 * 300.00326 * 5 3 2 37 37 H 1.08998 * 109.47320 * 179.97438 * 6 5 3 38 38 H 1.09001 * 109.47320 * 59.99881 * 6 5 3 39 39 H 1.09006 * 109.46605 * 299.99613 * 7 6 5 40 40 H 1.08995 * 109.47768 * 179.97438 * 7 6 5 41 41 H 0.96997 * 120.00320 * 95.00453 * 10 8 7 42 42 H 0.96997 * 119.99363 * 359.97438 * 15 13 11 43 43 H 1.08003 * 125.81236 * 0.02908 * 17 16 15 44 44 H 0.97000 * 119.99476 * 179.97438 * 23 22 20 45 45 H 1.07999 * 126.24954 * 0.02562 * 28 16 15 46 46 H 1.08998 * 109.47201 * 60.00015 * 29 3 2 47 47 H 1.09004 * 109.47519 * 299.99493 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 2.1446 3.5692 1.3070 7 6 3.6694 3.5716 1.1811 8 6 4.0743 2.8875 -0.1261 9 1 3.6395 3.4263 -0.9680 10 7 5.5343 2.8893 -0.2464 11 6 6.1667 3.9618 -0.7625 12 8 5.5266 4.9259 -1.1279 13 6 7.6547 3.9634 -0.8856 14 8 8.2951 2.9988 -0.5204 15 7 8.2872 5.0361 -1.4011 16 6 9.6853 5.0378 -1.5163 17 6 10.5499 3.9948 -1.1355 18 7 11.7785 4.3603 -1.3995 19 7 11.7492 5.6484 -1.9487 20 6 12.8386 6.3789 -2.3543 21 1 12.7022 7.3659 -2.7709 22 6 14.1176 5.8503 -2.2235 23 7 14.2838 4.6525 -1.7125 24 14 15.5999 6.8445 -2.7748 25 1 15.6567 8.1151 -2.0082 26 1 16.8389 6.0634 -2.5296 27 1 15.4827 7.1457 -4.2242 28 6 10.4458 6.0462 -2.0150 29 6 3.5648 1.4443 -0.1256 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.0697 1.5876 2.1492 36 1 0.5488 2.1253 1.3968 37 1 1.8558 4.0567 2.2382 38 1 1.7097 4.1080 0.4652 39 1 4.1043 3.0329 2.0230 40 1 4.0324 4.5994 1.1805 41 1 6.0460 2.1186 0.0453 42 1 7.7755 5.8069 -1.6925 43 1 10.2502 3.0516 -0.7031 44 1 15.1763 4.2837 -1.6216 45 1 10.0848 6.9909 -2.3940 46 1 3.8533 0.9569 -1.0569 47 1 3.9994 0.9053 0.7163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746419302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:36 Heat of formation + Delta-G solvation = -34.540604 kcal Electronic energy + Delta-G solvation = -27977.426098 eV Core-core repulsion = 23967.193233 eV Total energy + Delta-G solvation = -4010.232865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.07455 -41.31626 -40.07762 -39.07378 -36.46333 -35.75822 -34.97357 -33.95749 -32.30430 -31.09178 -29.96660 -29.53478 -27.21298 -25.72291 -24.53917 -23.31776 -22.90146 -22.00871 -21.41993 -21.28826 -20.66001 -19.58791 -19.12086 -17.71656 -17.45250 -16.93014 -16.80682 -16.72360 -15.97901 -15.75212 -15.63515 -15.56234 -15.07340 -15.02620 -14.86107 -14.69450 -14.46987 -14.29090 -13.70367 -13.51198 -13.39051 -13.27465 -12.97410 -12.88783 -12.60081 -12.55370 -12.30301 -12.17950 -12.13179 -12.03930 -11.96999 -11.69759 -11.37598 -11.20551 -11.07587 -11.05855 -10.87910 -10.53807 -10.21814 -10.14654 -8.63231 -8.49145 -6.27188 0.27961 1.29679 1.30403 1.42112 1.57221 1.72710 2.03660 2.12200 2.52703 2.57256 2.92507 3.07287 3.51041 3.62308 3.75585 3.94851 4.09736 4.17654 4.30522 4.38928 4.43626 4.47539 4.51577 4.55703 4.60275 4.76479 4.80650 4.84864 4.94952 4.97444 5.01707 5.07465 5.13997 5.20599 5.21327 5.24247 5.25826 5.29906 5.34384 5.36220 5.41398 5.56195 5.62474 5.89747 6.01695 6.24752 6.48446 6.66878 6.80878 7.06466 7.40523 7.62071 8.49867 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.040237 B = 0.001820 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.714978 B =15383.221704 C =15729.491908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.080 4.080 4 H 0.071 0.929 5 C -0.113 4.113 6 C -0.113 4.113 7 C -0.129 4.129 8 C 0.144 3.856 9 H 0.080 0.920 10 N -0.685 5.685 11 C 0.525 3.475 12 O -0.541 6.541 13 C 0.485 3.515 14 O -0.543 6.543 15 N -0.583 5.583 16 C -0.058 4.058 17 C -0.048 4.048 18 N -0.308 5.308 19 N -0.162 5.162 20 C -0.355 4.355 21 H 0.142 0.858 22 C -0.005 4.005 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.254 1.254 26 H -0.277 1.277 27 H -0.254 1.254 28 C -0.075 4.075 29 C -0.117 4.117 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.418 0.582 42 H 0.423 0.577 43 H 0.176 0.824 44 H 0.278 0.722 45 H 0.188 0.812 46 H 0.072 0.928 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.014 -4.532 4.008 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.099 4.099 4 H 0.089 0.911 5 C -0.151 4.151 6 C -0.151 4.151 7 C -0.167 4.167 8 C 0.040 3.960 9 H 0.098 0.902 10 N -0.337 5.337 11 C 0.305 3.695 12 O -0.418 6.418 13 C 0.267 3.733 14 O -0.422 6.422 15 N -0.227 5.227 16 C -0.164 4.164 17 C -0.223 4.223 18 N -0.139 5.139 19 N 0.070 4.930 20 C -0.486 4.486 21 H 0.159 0.841 22 C -0.217 4.217 23 N -0.448 5.448 24 Si 0.838 3.162 25 H -0.178 1.178 26 H -0.202 1.202 27 H -0.178 1.178 28 C -0.226 4.226 29 C -0.155 4.155 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.255 0.745 42 H 0.261 0.739 43 H 0.193 0.807 44 H 0.088 0.912 45 H 0.205 0.795 46 H 0.090 0.910 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.656 -5.042 4.109 24.534 hybrid contribution 0.051 0.493 -0.200 0.534 sum -23.605 -4.549 3.908 24.355 Atomic orbital electron populations 1.21818 0.95386 1.01802 1.02092 1.21534 0.96296 0.95407 1.02254 1.21106 0.93255 0.96838 0.98671 0.91089 1.21664 1.01463 0.94687 0.97240 1.21470 0.93332 0.97764 1.02494 1.21918 0.97702 1.00167 0.96937 1.21274 0.77145 0.98582 0.98961 0.90205 1.45869 1.08817 1.18094 1.60935 1.19666 0.87102 0.84011 0.78671 1.90728 1.67455 1.34431 1.49211 1.20327 0.89076 0.83428 0.80493 1.90644 1.67525 1.34693 1.49289 1.42091 1.04054 1.18470 1.58120 1.17305 0.82813 0.98204 1.18071 1.24247 0.90093 1.00944 1.07055 1.78154 1.19214 0.95507 1.21064 1.44832 1.04518 1.09520 1.34160 1.20635 0.83431 1.01343 1.43186 0.84085 1.26889 1.02754 0.97047 0.94986 1.70371 1.24735 1.15852 1.33867 0.84641 0.74250 0.77661 0.79602 1.17764 1.20162 1.17754 1.21998 0.84287 1.01878 1.14453 1.21874 0.96761 0.93440 1.03447 0.92890 0.92613 0.92032 0.92056 0.91591 0.91441 0.90486 0.90882 0.91942 0.91057 0.93364 0.74467 0.73948 0.80743 0.91209 0.79518 0.90965 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 71.98 0.70 -0.59 16 2 C -0.12 -1.09 5.40 30.59 0.17 -0.93 16 3 C -0.08 -0.84 2.19 -10.79 -0.02 -0.87 16 4 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 5 C -0.11 -1.12 4.96 30.59 0.15 -0.96 16 6 C -0.11 -1.42 5.92 30.59 0.18 -1.23 16 7 C -0.13 -2.17 5.49 30.59 0.17 -2.01 16 8 C 0.14 2.58 2.46 45.01 0.11 2.69 16 9 H 0.08 1.66 7.58 -2.39 -0.02 1.64 16 10 N -0.69 -15.49 5.07 -443.93 -2.25 -17.75 16 11 C 0.53 15.48 7.85 87.23 0.68 16.17 16 12 O -0.54 -17.28 16.14 -3.27 -0.05 -17.33 16 13 C 0.48 17.43 7.85 87.23 0.69 18.12 16 14 O -0.54 -22.11 13.62 -3.43 -0.05 -22.15 16 15 N -0.58 -21.78 5.45 -305.32 -1.66 -23.45 16 16 C -0.06 -2.68 6.90 37.83 0.26 -2.42 16 17 C -0.05 -2.57 10.85 85.44 0.93 -1.64 16 18 N -0.31 -18.33 10.39 -56.43 -0.59 -18.91 16 19 N -0.16 -8.98 3.73 -189.98 -0.71 -9.69 16 20 C -0.35 -18.67 10.25 84.02 0.86 -17.81 16 21 H 0.14 6.42 7.83 -2.91 -0.02 6.39 16 22 C 0.00 -0.23 5.50 84.96 0.47 0.23 16 23 N -0.82 -46.76 11.81 21.67 0.26 -46.50 16 24 Si 1.02 38.11 29.55 68.60 2.03 40.14 16 25 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 26 H -0.28 -10.22 7.11 99.48 0.71 -9.52 16 27 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 28 C -0.08 -3.52 11.50 83.41 0.96 -2.56 16 29 C -0.12 -1.51 4.67 30.61 0.14 -1.37 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.06 0.46 6.56 -2.39 -0.02 0.44 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.08 0.63 6.57 -2.38 -0.02 0.61 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 1.13 8.14 -2.38 -0.02 1.12 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.42 8.71 8.07 -92.71 -0.75 7.96 16 42 H 0.42 13.35 8.29 -92.71 -0.77 12.59 16 43 H 0.18 9.17 5.92 -2.91 -0.02 9.15 16 44 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.19 6.99 8.06 -2.91 -0.02 6.97 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -71.02 383.42 2.90 -68.12 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: -0.51 Total: 42.70 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 6.44 Total: 4.82 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -4.95 Total: -116.30 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.10 Total: -39.48 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -71.02 2.90 -68.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746419302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.577 kcal (2) G-P(sol) polarization free energy of solvation -71.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds