Wall clock time and date at job start Tue Mar 31 2020 17:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53005 * 109.47218 * 120.00180 * 2 1 3 5 5 C 1.52998 * 109.47147 * 175.00348 * 4 2 1 6 6 H 1.09000 * 110.88541 * 57.42304 * 5 4 2 7 7 C 1.55405 * 111.06990 * 181.20971 * 5 4 2 8 8 C 1.54325 * 102.82616 * 153.48436 * 7 5 4 9 9 N 1.47018 * 107.40412 * 337.97548 * 8 7 5 10 10 C 1.34775 * 125.64993 * 178.90064 * 9 8 7 11 11 O 1.21369 * 120.00161 * 179.97438 * 10 9 8 12 12 C 1.49308 * 119.99907 * 359.97097 * 10 9 8 13 13 O 1.21407 * 119.99747 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00245 * 180.02562 * 12 10 9 15 15 C 1.40286 * 120.00373 * 180.02562 * 14 12 10 16 16 C 1.40729 * 126.10034 * 0.02562 * 15 14 12 17 17 N 1.30870 * 108.37770 * 180.02562 * 16 15 14 18 18 N 1.40055 * 108.43891 * 359.97438 * 17 16 15 19 19 C 1.37292 * 126.05743 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00015 * 180.02562 * 19 18 17 21 21 C 1.39009 * 119.99957 * 0.02754 * 19 18 17 22 22 N 1.31281 * 120.00041 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99874 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47670 * 89.99689 * 23 21 19 25 25 H 1.48502 * 109.46900 * 209.99816 * 23 21 19 26 26 H 1.48501 * 109.47167 * 329.99180 * 23 21 19 27 27 C 1.35787 * 126.10419 * 179.71271 * 15 14 12 28 28 C 1.47426 * 108.70517 * 358.86539 * 9 8 7 29 29 H 1.08991 * 109.47166 * 299.99529 * 1 2 3 30 30 H 1.08997 * 109.47105 * 59.99979 * 1 2 3 31 31 H 1.09004 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47297 * 240.00020 * 2 1 3 33 33 H 1.08997 * 109.47178 * 299.99976 * 3 2 1 34 34 H 1.09003 * 109.47050 * 59.99869 * 3 2 1 35 35 H 1.08996 * 109.47099 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.46663 * 55.00239 * 4 2 1 37 37 H 1.08994 * 109.46632 * 295.00347 * 4 2 1 38 38 H 1.09000 * 110.69068 * 35.19694 * 7 5 4 39 39 H 1.09002 * 110.85092 * 271.84688 * 7 5 4 40 40 H 1.09002 * 109.88192 * 218.47989 * 8 7 5 41 41 H 1.09000 * 109.88128 * 97.46841 * 8 7 5 42 42 H 0.97003 * 119.99297 * 0.02562 * 14 12 10 43 43 H 1.08008 * 125.80722 * 0.03174 * 16 15 14 44 44 H 0.96996 * 119.99922 * 179.97438 * 22 21 19 45 45 H 1.07997 * 126.24684 * 0.02562 * 27 15 14 46 46 H 1.08999 * 110.36956 * 142.96999 * 28 9 8 47 47 H 1.09001 * 110.36709 * 265.18192 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1880 6 1 4.0219 0.1542 1.0957 7 6 4.1209 -1.5861 2.4272 8 6 5.4408 -2.1864 1.8988 9 7 5.3357 -2.2587 0.4342 10 6 6.2937 -2.7075 -0.4009 11 8 6.0966 -2.7225 -1.5984 12 6 7.5975 -3.1861 0.1472 13 8 7.7944 -3.1714 1.3451 14 7 8.5557 -3.6344 -0.6878 15 6 9.7805 -4.0847 -0.1729 16 6 10.1439 -4.1252 1.1861 17 7 11.3588 -4.6038 1.2742 18 7 11.8180 -4.8875 -0.0182 19 6 13.0478 -5.4036 -0.3437 20 1 13.3010 -5.5845 -1.3779 21 6 13.9672 -5.6933 0.6579 22 7 13.6596 -5.4730 1.9150 23 14 15.6408 -6.3949 0.2149 24 1 16.6018 -5.2838 -0.0022 25 1 16.1244 -7.2583 1.3222 26 1 15.5268 -7.2007 -1.0273 27 6 10.8246 -4.5647 -0.8962 28 6 4.0086 -1.7596 0.0302 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 0.0005 36 1 1.6054 -1.7199 1.2950 37 1 1.7516 -0.1584 2.1369 38 1 3.4353 -2.3748 2.7372 39 1 4.3128 -0.8955 3.2485 40 1 5.5843 -3.1857 2.3099 41 1 6.2775 -1.5467 2.1794 42 1 8.3984 -3.6458 -1.6449 43 1 9.5255 -3.8143 2.0152 44 1 14.3010 -5.6755 2.6139 45 1 10.8631 -4.6686 -1.9705 46 1 4.0820 -1.1971 -0.9005 47 1 3.3098 -2.5886 -0.0826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746422676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:52 Heat of formation + Delta-G solvation = 4.558699 kcal Electronic energy + Delta-G solvation = -28219.079657 eV Core-core repulsion = 24210.542265 eV Total energy + Delta-G solvation = -4008.537392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.67715 -39.70550 -38.66177 -37.65293 -36.24154 -34.34259 -33.19420 -32.03517 -30.31998 -29.53596 -28.11798 -27.51827 -26.93410 -25.20348 -24.07330 -22.54169 -21.14852 -20.99382 -19.99577 -19.57738 -19.36140 -17.70421 -17.36601 -16.74381 -16.28859 -15.65808 -15.50740 -15.16907 -14.82098 -14.46986 -14.42263 -14.28833 -13.85709 -13.80528 -13.41252 -13.18310 -13.02048 -12.91522 -12.77040 -12.62450 -12.51182 -12.16967 -11.90608 -11.73066 -11.52207 -11.47468 -11.29306 -11.25673 -11.18416 -10.86780 -10.78225 -10.71818 -10.58228 -10.55465 -10.27356 -9.22851 -9.04592 -8.86706 -8.78492 -8.12535 -6.76957 -6.60309 -4.27427 1.68525 2.50255 2.93410 3.03786 3.08669 3.33497 3.68809 3.72174 3.85524 4.17110 4.33113 4.37324 4.41129 4.57394 4.61814 4.70678 4.88237 4.98346 5.02100 5.07469 5.11118 5.17891 5.28278 5.32998 5.41666 5.50628 5.52636 5.57873 5.61498 5.66391 5.79512 5.85977 5.86666 5.92915 6.01845 6.08653 6.16044 6.21393 6.36701 6.77642 6.89129 6.94634 7.16652 7.24690 7.70911 7.83426 8.12321 8.18939 8.50410 8.70482 9.31613 9.60326 10.35543 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.039851 B = 0.001934 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.444705 B =14476.630311 C =14918.326470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.150 4.150 4 C -0.102 4.102 5 C -0.104 4.104 6 H 0.089 0.911 7 C -0.131 4.131 8 C 0.107 3.893 9 N -0.595 5.595 10 C 0.527 3.473 11 O -0.532 6.532 12 C 0.486 3.514 13 O -0.518 6.518 14 N -0.585 5.585 15 C -0.068 4.068 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.263 1.263 27 C -0.077 4.077 28 C 0.110 3.890 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.409 0.591 43 H 0.178 0.822 44 H 0.276 0.724 45 H 0.149 0.851 46 H 0.079 0.921 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.321 9.401 -1.465 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.207 4.207 4 C -0.140 4.140 5 C -0.123 4.123 6 H 0.107 0.893 7 C -0.169 4.169 8 C -0.015 4.015 9 N -0.329 5.329 10 C 0.311 3.689 11 O -0.408 6.408 12 C 0.267 3.733 13 O -0.395 6.395 14 N -0.227 5.227 15 C -0.174 4.174 16 C -0.202 4.202 17 N -0.091 5.091 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.187 1.187 27 C -0.229 4.229 28 C -0.012 4.012 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.244 0.756 43 H 0.194 0.806 44 H 0.086 0.914 45 H 0.166 0.834 46 H 0.098 0.902 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.156 9.022 -0.276 22.085 hybrid contribution -0.035 -0.096 -1.315 1.319 sum -20.192 8.926 -1.591 22.134 Atomic orbital electron populations 1.21837 0.95238 1.01698 1.01696 1.21176 0.95687 0.96564 0.98567 1.21896 1.01329 0.95844 1.01645 1.21590 0.93280 1.00937 0.98147 1.22518 0.96190 0.99122 0.94492 0.89296 1.22853 0.96374 1.00039 0.97643 1.22187 0.97968 1.02777 0.78588 1.48192 1.14623 1.61827 1.08261 1.20023 0.84660 0.78455 0.85731 1.90730 1.80676 1.54753 1.14669 1.19544 0.84783 0.82069 0.86893 1.90638 1.79672 1.54653 1.14566 1.42134 1.12296 1.58328 1.09980 1.17251 0.87625 1.18939 0.93561 1.24137 0.95395 1.05786 0.94926 1.78251 1.10079 1.22216 0.98592 1.44555 1.08921 1.33857 1.03213 1.19923 0.87871 1.42396 0.95236 0.86449 1.25664 1.00517 0.96262 0.94684 1.70205 1.34556 1.35208 0.99451 0.85805 0.80200 0.79092 0.78944 1.19536 1.20042 1.18745 1.21305 0.91025 1.14982 0.95583 1.22382 0.83162 0.97144 0.98475 0.92756 0.92767 0.92708 0.90952 0.92843 0.92730 0.92360 0.91480 0.91237 0.90473 0.89769 0.90162 0.90049 0.75644 0.80570 0.91370 0.83370 0.90210 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.19 37.16 0.34 -0.45 16 2 C -0.10 -0.61 2.84 -90.62 -0.26 -0.87 16 3 C -0.15 -0.90 8.97 37.16 0.33 -0.57 16 4 C -0.10 -0.60 4.21 -26.73 -0.11 -0.71 16 5 C -0.10 -0.78 2.83 -88.33 -0.25 -1.03 16 6 H 0.09 0.68 6.55 -51.93 -0.34 0.34 16 7 C -0.13 -1.02 6.45 -24.76 -0.16 -1.18 16 8 C 0.11 1.24 5.48 -3.07 -0.02 1.23 16 9 N -0.59 -7.87 3.33 -171.08 -0.57 -8.44 16 10 C 0.53 8.62 7.91 -11.65 -0.09 8.53 16 11 O -0.53 -9.39 16.73 5.48 0.09 -9.30 16 12 C 0.49 9.08 7.82 -11.65 -0.09 8.99 16 13 O -0.52 -10.44 11.26 5.45 0.06 -10.38 16 14 N -0.58 -11.32 5.45 -10.45 -0.06 -11.38 16 15 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 16 C -0.03 -0.69 10.85 -17.02 -0.18 -0.88 16 17 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 18 N -0.14 -3.79 3.73 -11.40 -0.04 -3.83 16 19 C -0.32 -8.45 10.25 -14.82 -0.15 -8.61 16 20 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.20 11.81 55.50 0.66 -20.54 16 23 Si 0.94 18.74 29.55 -169.99 -5.02 13.72 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 27 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 28 C 0.11 1.11 5.54 -2.53 -0.01 1.10 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.49 7.23 -51.93 -0.38 0.11 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.38 6.54 -51.93 -0.34 0.04 16 36 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 41 H 0.08 1.04 7.57 -51.93 -0.39 0.64 16 42 H 0.41 6.90 8.29 -40.82 -0.34 6.56 16 43 H 0.18 4.42 5.92 -52.48 -0.31 4.11 16 44 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.15 2.96 8.06 -52.49 -0.42 2.53 16 46 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 47 H 0.07 0.68 8.01 -51.93 -0.42 0.26 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -32.23 382.76 -7.40 -39.63 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.09 Total: 9.48 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.52 Total: 2.44 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.31 Total: -51.35 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.15 Total: -19.68 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.23 -7.40 -39.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746422676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.187 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds