Wall clock time and date at job start Tue Mar 31 2020 17:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53005 * 109.47218 * 120.00180 * 2 1 3 5 5 C 1.52998 * 109.47147 * 175.00348 * 4 2 1 6 6 H 1.09000 * 110.88541 * 57.42304 * 5 4 2 7 7 C 1.55405 * 111.06990 * 181.20971 * 5 4 2 8 8 C 1.54325 * 102.82616 * 153.48436 * 7 5 4 9 9 N 1.47018 * 107.40412 * 337.97548 * 8 7 5 10 10 C 1.34775 * 125.64993 * 178.90064 * 9 8 7 11 11 O 1.21369 * 120.00161 * 179.97438 * 10 9 8 12 12 C 1.49308 * 119.99907 * 359.97097 * 10 9 8 13 13 O 1.21407 * 119.99747 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00245 * 180.02562 * 12 10 9 15 15 C 1.40286 * 120.00373 * 180.02562 * 14 12 10 16 16 C 1.40729 * 126.10034 * 0.02562 * 15 14 12 17 17 N 1.30870 * 108.37770 * 180.02562 * 16 15 14 18 18 N 1.40055 * 108.43891 * 359.97438 * 17 16 15 19 19 C 1.37292 * 126.05743 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00015 * 180.02562 * 19 18 17 21 21 C 1.39009 * 119.99957 * 0.02754 * 19 18 17 22 22 N 1.31281 * 120.00041 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99874 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47670 * 89.99689 * 23 21 19 25 25 H 1.48502 * 109.46900 * 209.99816 * 23 21 19 26 26 H 1.48501 * 109.47167 * 329.99180 * 23 21 19 27 27 C 1.35787 * 126.10419 * 179.71271 * 15 14 12 28 28 C 1.47426 * 108.70517 * 358.86539 * 9 8 7 29 29 H 1.08991 * 109.47166 * 299.99529 * 1 2 3 30 30 H 1.08997 * 109.47105 * 59.99979 * 1 2 3 31 31 H 1.09004 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47297 * 240.00020 * 2 1 3 33 33 H 1.08997 * 109.47178 * 299.99976 * 3 2 1 34 34 H 1.09003 * 109.47050 * 59.99869 * 3 2 1 35 35 H 1.08996 * 109.47099 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.46663 * 55.00239 * 4 2 1 37 37 H 1.08994 * 109.46632 * 295.00347 * 4 2 1 38 38 H 1.09000 * 110.69068 * 35.19694 * 7 5 4 39 39 H 1.09002 * 110.85092 * 271.84688 * 7 5 4 40 40 H 1.09002 * 109.88192 * 218.47989 * 8 7 5 41 41 H 1.09000 * 109.88128 * 97.46841 * 8 7 5 42 42 H 0.97003 * 119.99297 * 0.02562 * 14 12 10 43 43 H 1.08008 * 125.80722 * 0.03174 * 16 15 14 44 44 H 0.96996 * 119.99922 * 179.97438 * 22 21 19 45 45 H 1.07997 * 126.24684 * 0.02562 * 27 15 14 46 46 H 1.08999 * 110.36956 * 142.96999 * 28 9 8 47 47 H 1.09001 * 110.36709 * 265.18192 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1880 6 1 4.0219 0.1542 1.0957 7 6 4.1209 -1.5861 2.4272 8 6 5.4408 -2.1864 1.8988 9 7 5.3357 -2.2587 0.4342 10 6 6.2937 -2.7075 -0.4009 11 8 6.0966 -2.7225 -1.5984 12 6 7.5975 -3.1861 0.1472 13 8 7.7944 -3.1714 1.3451 14 7 8.5557 -3.6344 -0.6878 15 6 9.7805 -4.0847 -0.1729 16 6 10.1439 -4.1252 1.1861 17 7 11.3588 -4.6038 1.2742 18 7 11.8180 -4.8875 -0.0182 19 6 13.0478 -5.4036 -0.3437 20 1 13.3010 -5.5845 -1.3779 21 6 13.9672 -5.6933 0.6579 22 7 13.6596 -5.4730 1.9150 23 14 15.6408 -6.3949 0.2149 24 1 16.6018 -5.2838 -0.0022 25 1 16.1244 -7.2583 1.3222 26 1 15.5268 -7.2007 -1.0273 27 6 10.8246 -4.5647 -0.8962 28 6 4.0086 -1.7596 0.0302 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 0.0005 36 1 1.6054 -1.7199 1.2950 37 1 1.7516 -0.1584 2.1369 38 1 3.4353 -2.3748 2.7372 39 1 4.3128 -0.8955 3.2485 40 1 5.5843 -3.1857 2.3099 41 1 6.2775 -1.5467 2.1794 42 1 8.3984 -3.6458 -1.6449 43 1 9.5255 -3.8143 2.0152 44 1 14.3010 -5.6755 2.6139 45 1 10.8631 -4.6686 -1.9705 46 1 4.0820 -1.1971 -0.9005 47 1 3.3098 -2.5886 -0.0826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746422676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:51 Heat of formation + Delta-G solvation = -15.728141 kcal Electronic energy + Delta-G solvation = -28219.959360 eV Core-core repulsion = 24210.542265 eV Total energy + Delta-G solvation = -4009.417095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.11059 -41.34264 -39.89500 -38.94871 -36.99491 -36.01264 -35.01176 -32.92309 -32.30305 -30.34547 -29.92210 -27.98837 -27.95513 -26.88620 -25.25811 -23.71218 -22.89791 -21.77755 -21.43640 -21.00132 -20.31126 -19.39237 -18.75877 -17.88798 -17.52755 -17.41859 -16.81340 -16.70410 -15.96032 -15.73720 -15.48036 -15.29789 -15.07092 -14.95153 -14.82820 -14.69170 -14.27074 -13.88733 -13.67475 -13.51844 -13.40688 -13.26660 -13.00080 -12.97964 -12.91724 -12.79130 -12.45892 -12.34608 -12.09609 -12.08020 -11.98767 -11.82858 -11.34283 -11.27780 -11.15726 -11.07495 -10.88438 -10.51716 -10.15009 -9.88814 -8.63119 -8.49608 -6.27333 0.25347 1.20700 1.28543 1.41168 1.58256 1.71142 2.01128 2.10422 2.44575 2.51295 2.83188 3.06845 3.36608 3.54976 3.62725 3.80222 4.13400 4.16543 4.26982 4.32806 4.38401 4.41613 4.50952 4.60241 4.61849 4.83445 4.85233 4.90350 4.92988 4.95352 4.96534 4.99253 5.00594 5.09242 5.16020 5.17185 5.20548 5.22979 5.30113 5.34817 5.44880 5.56722 5.58626 5.90111 6.02913 6.19048 6.36618 6.63943 6.72883 7.05216 7.40183 7.61831 8.49647 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.039851 B = 0.001934 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.444705 B =14476.630311 C =14918.326470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C -0.150 4.150 4 C -0.095 4.095 5 C -0.093 4.093 6 H 0.089 0.911 7 C -0.119 4.119 8 C 0.101 3.899 9 N -0.588 5.588 10 C 0.530 3.470 11 O -0.547 6.547 12 C 0.487 3.513 13 O -0.533 6.533 14 N -0.584 5.584 15 C -0.056 4.056 16 C -0.047 4.047 17 N -0.307 5.307 18 N -0.163 5.163 19 C -0.354 4.354 20 H 0.141 0.859 21 C -0.005 4.005 22 N -0.820 5.820 23 Si 1.020 2.980 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.245 1.245 27 C -0.076 4.076 28 C 0.105 3.895 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.422 0.578 43 H 0.176 0.824 44 H 0.278 0.722 45 H 0.187 0.813 46 H 0.075 0.925 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.689 9.764 -2.371 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.207 4.207 4 C -0.133 4.133 5 C -0.112 4.112 6 H 0.107 0.893 7 C -0.157 4.157 8 C -0.021 4.021 9 N -0.320 5.320 10 C 0.313 3.687 11 O -0.426 6.426 12 C 0.269 3.731 13 O -0.411 6.411 14 N -0.229 5.229 15 C -0.162 4.162 16 C -0.222 4.222 17 N -0.139 5.139 18 N 0.069 4.931 19 C -0.485 4.485 20 H 0.159 0.841 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.189 1.189 25 H -0.201 1.201 26 H -0.168 1.168 27 C -0.227 4.227 28 C -0.016 4.016 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.259 0.741 43 H 0.193 0.807 44 H 0.088 0.912 45 H 0.204 0.796 46 H 0.094 0.906 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.590 9.411 -1.190 23.582 hybrid contribution 0.194 -0.121 -1.024 1.049 sum -21.396 9.290 -2.214 23.431 Atomic orbital electron populations 1.21819 0.94644 1.01920 1.01943 1.21171 0.96172 0.96395 0.98307 1.21895 1.00876 0.96010 1.01930 1.21557 0.91602 1.01536 0.98565 1.22486 0.97462 0.98330 0.92894 0.89269 1.22848 0.94198 1.00637 0.97999 1.22317 1.00000 1.02163 0.77656 1.48343 1.14956 1.59923 1.08823 1.19459 0.84292 0.79232 0.85759 1.90724 1.80817 1.55979 1.15066 1.20125 0.85493 0.80887 0.86628 1.90630 1.80206 1.54778 1.15478 1.42075 1.11260 1.58751 1.10816 1.17292 0.88854 1.17500 0.92564 1.24237 0.95180 1.06506 0.96289 1.78149 1.11411 1.23835 1.00481 1.44835 1.10033 1.35023 1.03180 1.20662 0.88080 1.43010 0.96732 0.84127 1.26886 1.04756 0.95878 0.94182 1.70373 1.36385 1.37106 1.00943 0.84581 0.74151 0.78324 0.79096 1.18866 1.20051 1.16825 1.21985 0.90126 1.13442 0.97110 1.22671 0.81471 0.97994 0.99468 0.92196 0.92888 0.92501 0.91833 0.92993 0.92081 0.93026 0.90845 0.89909 0.88943 0.87977 0.91410 0.91461 0.74075 0.80700 0.91211 0.79597 0.90650 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.19 71.98 0.66 -0.60 16 2 C -0.10 -1.01 2.84 -10.79 -0.03 -1.04 16 3 C -0.15 -1.54 8.97 71.98 0.65 -0.90 16 4 C -0.09 -0.83 4.21 30.60 0.13 -0.71 16 5 C -0.09 -1.17 2.83 -9.31 -0.03 -1.19 16 6 H 0.09 1.17 6.55 -2.39 -0.02 1.15 16 7 C -0.12 -1.56 6.45 31.87 0.21 -1.36 16 8 C 0.10 2.26 5.48 86.73 0.48 2.73 16 9 N -0.59 -15.02 3.33 -813.52 -2.71 -17.72 16 10 C 0.53 17.07 7.91 87.23 0.69 17.76 16 11 O -0.55 -18.91 16.73 -3.31 -0.06 -18.97 16 12 C 0.49 18.23 7.82 87.22 0.68 18.92 16 13 O -0.53 -21.91 11.26 -3.42 -0.04 -21.95 16 14 N -0.58 -22.47 5.45 -305.33 -1.66 -24.13 16 15 C -0.06 -2.62 6.90 37.83 0.26 -2.36 16 16 C -0.05 -2.50 10.85 85.45 0.93 -1.58 16 17 N -0.31 -18.30 10.39 -56.43 -0.59 -18.89 16 18 N -0.16 -9.03 3.73 -189.98 -0.71 -9.74 16 19 C -0.35 -18.67 10.25 84.02 0.86 -17.80 16 20 H 0.14 6.45 7.83 -2.91 -0.02 6.42 16 21 C 0.00 -0.25 5.50 84.96 0.47 0.22 16 22 N -0.82 -46.76 11.81 21.66 0.26 -46.51 16 23 Si 1.02 38.24 29.55 68.60 2.03 40.27 16 24 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 25 H -0.28 -10.20 7.11 99.48 0.71 -9.49 16 26 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 27 C -0.08 -3.57 11.50 83.41 0.96 -2.61 16 28 C 0.10 1.93 5.54 86.86 0.48 2.41 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.75 7.23 -2.39 -0.02 0.73 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.05 0.59 6.54 -2.39 -0.02 0.58 16 36 H 0.07 0.60 8.10 -2.39 -0.02 0.58 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.09 0.99 8.04 -2.39 -0.02 0.97 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.70 7.69 -2.39 -0.02 1.68 16 41 H 0.07 1.71 7.57 -2.39 -0.02 1.69 16 42 H 0.42 13.87 8.29 -92.71 -0.77 13.10 16 43 H 0.18 9.18 5.92 -2.91 -0.02 9.16 16 44 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 45 H 0.19 7.06 8.06 -2.91 -0.02 7.04 16 46 H 0.08 1.50 7.85 -2.39 -0.02 1.48 16 47 H 0.08 1.38 8.01 -2.39 -0.02 1.36 16 Total: -1.00 -72.21 382.76 4.13 -68.08 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: 0.22 Total: 37.68 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 7.39 Total: 11.89 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -5.41 Total: -116.99 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.09 Total: -40.92 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -72.21 4.13 -68.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746422676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.349 kcal (2) G-P(sol) polarization free energy of solvation -72.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds