Wall clock time and date at job start Tue Mar 31 2020 17:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47052 * 2 1 4 4 C 1.52996 * 109.46870 * 175.00032 * 3 2 1 5 5 C 1.53003 * 109.46638 * 185.00032 * 4 3 2 6 6 N 1.46494 * 109.46850 * 295.00209 * 3 2 1 7 7 C 1.46766 * 124.35111 * 120.00477 * 6 3 2 8 8 C 1.54480 * 105.47721 * 163.00018 * 7 6 3 9 9 H 1.08998 * 110.96692 * 267.25738 * 8 7 6 10 10 C 1.50698 * 110.96808 * 143.52948 * 8 7 6 11 11 O 1.21303 * 120.00012 * 3.09273 * 10 8 7 12 12 N 1.34777 * 119.99538 * 183.08619 * 10 8 7 13 13 C 1.40597 * 119.99665 * 179.72549 * 12 10 8 14 14 C 1.40644 * 126.08126 * 0.30590 * 13 12 10 15 15 N 1.30914 * 108.38647 * 180.02562 * 14 13 12 16 16 N 1.40064 * 108.40789 * 359.97438 * 15 14 13 17 17 C 1.37316 * 126.07195 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00299 * 180.02562 * 17 16 15 19 19 C 1.38983 * 120.00012 * 0.02562 * 17 16 15 20 20 N 1.31294 * 120.00088 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00322 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46976 * 90.00114 * 21 19 17 23 23 H 1.48498 * 109.47115 * 210.00354 * 21 19 17 24 24 H 1.48498 * 109.46954 * 330.00270 * 21 19 17 25 25 C 1.35680 * 126.07949 * 179.97438 * 13 12 10 26 26 C 1.54630 * 101.79585 * 25.39326 * 8 7 6 27 27 C 1.34420 * 124.35060 * 300.01937 * 6 3 2 28 28 O 1.21284 * 124.94063 * 0.36530 * 27 6 3 29 29 H 1.09000 * 109.46572 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46746 * 299.99611 * 1 2 3 31 31 H 1.08993 * 109.47167 * 60.00382 * 1 2 3 32 32 H 1.09002 * 109.47394 * 240.00112 * 2 1 3 33 33 H 1.09002 * 109.47601 * 120.00312 * 2 1 3 34 34 H 1.09003 * 109.46749 * 55.00070 * 3 2 1 35 35 H 1.08997 * 109.47668 * 304.99786 * 4 3 2 36 36 H 1.08995 * 109.47394 * 65.00266 * 4 3 2 37 37 H 1.09003 * 109.47321 * 60.00592 * 5 4 3 38 38 H 1.09008 * 109.46923 * 180.02562 * 5 4 3 39 39 H 1.09001 * 109.47481 * 299.99788 * 5 4 3 40 40 H 1.08997 * 110.24646 * 43.99274 * 7 6 3 41 41 H 1.09001 * 110.24115 * 282.00094 * 7 6 3 42 42 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 43 43 H 1.07997 * 125.81118 * 0.02562 * 14 13 12 44 44 H 0.97004 * 120.00415 * 180.02562 * 20 19 17 45 45 H 1.07994 * 126.24810 * 359.97244 * 25 13 12 46 46 H 1.09001 * 110.48679 * 93.90232 * 26 8 7 47 47 H 1.09000 * 110.48802 * 216.53820 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4443 0.1257 5 6 4.0644 2.8851 0.2511 6 7 1.6524 2.0975 -1.2518 7 6 0.8075 3.2948 -1.3329 8 6 1.0286 3.8598 -2.7535 9 1 1.8235 4.6056 -2.7574 10 6 -0.2487 4.4341 -3.3103 11 8 -1.2511 4.4581 -2.6276 12 7 -0.2770 4.9212 -4.5666 13 6 -1.4701 5.4517 -5.0881 14 6 -2.7006 5.5430 -4.4131 15 7 -3.5744 6.0905 -5.2196 16 7 -2.9390 6.3699 -6.4362 17 6 -3.5207 6.9463 -7.5385 18 1 -2.9360 7.1174 -8.4303 19 6 -4.8619 7.3095 -7.5065 20 7 -5.5725 7.1019 -6.4223 21 14 -5.6534 8.0929 -9.0063 22 1 -6.2180 7.0322 -9.8789 23 1 -6.7401 9.0070 -8.5718 24 1 -4.6313 8.8623 -9.7603 25 6 -1.6375 5.9723 -6.3297 26 6 1.4530 2.5945 -3.5345 27 6 2.0245 1.6788 -2.4737 28 8 2.7184 0.7088 -2.6941 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6053 1.9815 0.8419 35 1 3.8571 0.8801 1.0113 36 1 4.0029 0.9837 -0.7596 37 1 3.6263 3.3458 1.1366 38 1 5.1508 2.8864 0.3402 39 1 3.7722 3.4494 -0.6345 40 1 1.1153 4.0250 -0.5844 41 1 -0.2398 3.0277 -1.1919 42 1 0.5245 4.9018 -5.1126 43 1 -2.8922 5.2169 -3.4015 44 1 -6.5087 7.3551 -6.4000 45 1 -0.8801 6.0547 -7.0951 46 1 0.5885 2.1327 -4.0114 47 1 2.2126 2.8409 -4.2763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747476074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:41 Heat of formation + Delta-G solvation = 4.189317 kcal Electronic energy + Delta-G solvation = -28892.852710 eV Core-core repulsion = 24884.299300 eV Total energy + Delta-G solvation = -4008.553410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.08628 -39.84987 -38.64681 -36.77367 -35.68370 -34.30838 -33.21200 -32.32794 -31.20777 -30.22881 -27.98483 -27.69683 -26.62516 -24.98534 -23.21743 -22.25825 -22.20362 -21.00874 -19.99284 -19.47181 -18.97510 -17.74998 -17.17983 -16.88772 -15.97540 -15.51477 -15.43069 -15.20374 -14.76897 -14.63236 -14.54325 -14.11133 -13.93192 -13.65121 -13.41414 -13.27591 -13.19446 -12.97922 -12.89832 -12.80417 -12.67692 -11.85236 -11.76580 -11.67871 -11.56542 -11.44001 -11.34913 -11.27716 -11.13939 -11.07015 -11.01194 -10.97635 -10.55683 -10.22832 -9.80229 -9.26044 -9.20658 -8.84835 -8.77517 -8.09937 -6.75469 -6.58752 -4.26258 2.47779 2.69280 2.77302 2.98733 3.03200 3.08355 3.46587 3.62592 3.83201 4.12343 4.19701 4.37036 4.49806 4.63445 4.72707 4.73009 4.82852 4.89761 4.99407 5.02415 5.14231 5.22549 5.24049 5.27310 5.34200 5.42713 5.54010 5.61896 5.63765 5.69975 5.77615 5.80939 5.88530 5.96878 6.01466 6.12304 6.20561 6.40590 6.49575 6.84882 6.91199 6.99635 7.05246 7.19853 7.82280 8.06381 8.10110 8.23417 8.57014 8.76806 9.34112 9.63269 10.37178 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028428 B = 0.002193 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.697816 B =12762.259942 C =13012.926956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.160 3.840 4 C -0.141 4.141 5 C -0.148 4.148 6 N -0.609 5.609 7 C 0.118 3.882 8 C -0.118 4.118 9 H 0.114 0.886 10 C 0.509 3.491 11 O -0.531 6.531 12 N -0.618 5.618 13 C -0.063 4.063 14 C -0.032 4.032 15 N -0.261 5.261 16 N -0.142 5.142 17 C -0.323 4.323 18 H 0.116 0.884 19 C 0.046 3.954 20 N -0.770 5.770 21 Si 0.935 3.065 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.264 1.264 25 C -0.083 4.083 26 C -0.148 4.148 27 C 0.523 3.477 28 O -0.531 6.531 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.398 0.602 43 H 0.176 0.824 44 H 0.275 0.725 45 H 0.146 0.854 46 H 0.110 0.890 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.796 -7.639 10.048 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.058 3.942 4 C -0.179 4.179 5 C -0.206 4.206 6 N -0.343 5.343 7 C -0.005 4.005 8 C -0.140 4.140 9 H 0.132 0.868 10 C 0.294 3.706 11 O -0.408 6.408 12 N -0.260 5.260 13 C -0.168 4.168 14 C -0.208 4.208 15 N -0.092 5.092 16 N 0.091 4.909 17 C -0.455 4.455 18 H 0.134 0.866 19 C -0.171 4.171 20 N -0.396 5.396 21 Si 0.758 3.242 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.234 4.234 26 C -0.188 4.188 27 C 0.311 3.689 28 O -0.408 6.408 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.231 0.769 43 H 0.193 0.807 44 H 0.086 0.914 45 H 0.163 0.837 46 H 0.128 0.872 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.003 -7.734 10.461 19.113 hybrid contribution 0.951 0.208 -0.913 1.334 sum 14.953 -7.526 9.549 19.272 Atomic orbital electron populations 1.21732 0.95287 1.01662 1.02038 1.21949 0.96575 0.96042 1.03362 1.21079 0.94673 0.93350 0.85085 1.21946 0.94868 0.97881 1.03239 1.21727 1.00745 0.96405 1.01698 1.48362 1.50652 1.29222 1.06104 1.22017 0.96608 0.86308 0.95602 1.22171 0.97849 0.97959 0.96047 0.86840 1.19773 0.89250 0.79717 0.81896 1.90617 1.34948 1.56717 1.58538 1.42449 1.11473 1.58563 1.13473 1.17252 0.87609 1.16632 0.95313 1.24105 0.90113 1.05544 1.01009 1.78265 1.18851 1.21692 0.90391 1.44555 1.04141 1.32900 1.09312 1.19873 0.94995 1.39678 0.90971 0.86600 1.25644 0.96439 0.96540 0.98491 1.70212 1.08136 1.35450 1.25805 0.85829 0.79212 0.79099 0.80029 1.19568 1.20074 1.18797 1.21270 0.89764 1.14127 0.98256 1.22401 1.03638 0.94678 0.98125 1.20698 0.79301 0.84741 0.84149 1.90687 1.38378 1.27967 1.83811 0.92775 0.92801 0.92500 0.90263 0.91067 0.89351 0.91017 0.90254 0.92854 0.92811 0.92681 0.89901 0.88786 0.76912 0.80734 0.91432 0.83697 0.87186 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.80 37.16 0.36 -1.05 16 2 C -0.14 -1.29 5.36 -26.73 -0.14 -1.44 16 3 C 0.16 1.40 2.25 -67.93 -0.15 1.25 16 4 C -0.14 -1.18 5.36 -26.73 -0.14 -1.32 16 5 C -0.15 -1.12 9.80 37.16 0.36 -0.75 16 6 N -0.61 -6.03 1.74 -164.82 -0.29 -6.32 16 7 C 0.12 1.16 6.64 -3.12 -0.02 1.14 16 8 C -0.12 -1.18 3.54 -90.14 -0.32 -1.50 16 9 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 10 C 0.51 7.64 7.03 -10.99 -0.08 7.56 16 11 O -0.53 -10.07 12.68 5.54 0.07 -10.00 16 12 N -0.62 -9.82 5.45 -10.00 -0.05 -9.88 16 13 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 16 14 C -0.03 -0.82 10.85 -17.04 -0.18 -1.00 16 15 N -0.26 -7.42 10.40 30.80 0.32 -7.10 16 16 N -0.14 -3.80 3.74 -11.41 -0.04 -3.84 16 17 C -0.32 -8.39 10.25 -14.82 -0.15 -8.54 16 18 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 19 C 0.05 1.17 5.50 -17.51 -0.10 1.08 16 20 N -0.77 -21.23 11.81 55.49 0.66 -20.57 16 21 Si 0.93 18.64 29.55 -169.99 -5.02 13.62 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 24 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 25 C -0.08 -1.88 11.49 -16.39 -0.19 -2.07 16 26 C -0.15 -1.47 6.40 -26.71 -0.17 -1.64 16 27 C 0.52 6.14 7.37 -10.83 -0.08 6.06 16 28 O -0.53 -7.81 15.02 5.55 0.08 -7.73 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.63 7.75 -51.93 -0.40 0.23 16 32 H 0.08 0.92 6.62 -51.93 -0.34 0.57 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.85 6.65 -51.93 -0.35 0.50 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 39 H 0.05 0.45 7.75 -51.93 -0.40 0.05 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 1.11 7.01 -51.93 -0.36 0.75 16 42 H 0.40 4.75 8.83 -40.82 -0.36 4.39 16 43 H 0.18 4.36 5.92 -52.49 -0.31 4.05 16 44 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 46 H 0.11 1.20 7.89 -51.93 -0.41 0.79 16 47 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -33.55 384.23 -7.20 -40.74 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.13 Total: 9.45 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.58 Total: -4.17 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.59 Total: -47.71 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.15 Total: -17.73 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.55 -7.20 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747476074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.933 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds