Wall clock time and date at job start Tue Mar 31 2020 17:59:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53007 * 109.47052 * 2 1
4 4 C 1.52996 * 109.46870 * 175.00032 * 3 2 1
5 5 C 1.53003 * 109.46638 * 185.00032 * 4 3 2
6 6 N 1.46494 * 109.46850 * 295.00209 * 3 2 1
7 7 C 1.46766 * 124.35111 * 120.00477 * 6 3 2
8 8 C 1.54480 * 105.47721 * 163.00018 * 7 6 3
9 9 H 1.08998 * 110.96692 * 267.25738 * 8 7 6
10 10 C 1.50698 * 110.96808 * 143.52948 * 8 7 6
11 11 O 1.21303 * 120.00012 * 3.09273 * 10 8 7
12 12 N 1.34777 * 119.99538 * 183.08619 * 10 8 7
13 13 C 1.40597 * 119.99665 * 179.72549 * 12 10 8
14 14 C 1.40644 * 126.08126 * 0.30590 * 13 12 10
15 15 N 1.30914 * 108.38647 * 180.02562 * 14 13 12
16 16 N 1.40064 * 108.40789 * 359.97438 * 15 14 13
17 17 C 1.37316 * 126.07195 * 179.97438 * 16 15 14
18 18 H 1.08002 * 120.00299 * 180.02562 * 17 16 15
19 19 C 1.38983 * 120.00012 * 0.02562 * 17 16 15
20 20 N 1.31294 * 120.00088 * 0.02562 * 19 17 16
21 21 Si 1.86806 * 120.00322 * 180.02562 * 19 17 16
22 22 H 1.48502 * 109.46976 * 90.00114 * 21 19 17
23 23 H 1.48498 * 109.47115 * 210.00354 * 21 19 17
24 24 H 1.48498 * 109.46954 * 330.00270 * 21 19 17
25 25 C 1.35680 * 126.07949 * 179.97438 * 13 12 10
26 26 C 1.54630 * 101.79585 * 25.39326 * 8 7 6
27 27 C 1.34420 * 124.35060 * 300.01937 * 6 3 2
28 28 O 1.21284 * 124.94063 * 0.36530 * 27 6 3
29 29 H 1.09000 * 109.46572 * 180.02562 * 1 2 3
30 30 H 1.08997 * 109.46746 * 299.99611 * 1 2 3
31 31 H 1.08993 * 109.47167 * 60.00382 * 1 2 3
32 32 H 1.09002 * 109.47394 * 240.00112 * 2 1 3
33 33 H 1.09002 * 109.47601 * 120.00312 * 2 1 3
34 34 H 1.09003 * 109.46749 * 55.00070 * 3 2 1
35 35 H 1.08997 * 109.47668 * 304.99786 * 4 3 2
36 36 H 1.08995 * 109.47394 * 65.00266 * 4 3 2
37 37 H 1.09003 * 109.47321 * 60.00592 * 5 4 3
38 38 H 1.09008 * 109.46923 * 180.02562 * 5 4 3
39 39 H 1.09001 * 109.47481 * 299.99788 * 5 4 3
40 40 H 1.08997 * 110.24646 * 43.99274 * 7 6 3
41 41 H 1.09001 * 110.24115 * 282.00094 * 7 6 3
42 42 H 0.97001 * 120.00485 * 0.02562 * 12 10 8
43 43 H 1.07997 * 125.81118 * 0.02562 * 14 13 12
44 44 H 0.97004 * 120.00415 * 180.02562 * 20 19 17
45 45 H 1.07994 * 126.24810 * 359.97244 * 25 13 12
46 46 H 1.09001 * 110.48679 * 93.90232 * 26 8 7
47 47 H 1.09000 * 110.48802 * 216.53820 * 26 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5648 1.4443 0.1257
5 6 4.0644 2.8851 0.2511
6 7 1.6524 2.0975 -1.2518
7 6 0.8075 3.2948 -1.3329
8 6 1.0286 3.8598 -2.7535
9 1 1.8235 4.6056 -2.7574
10 6 -0.2487 4.4341 -3.3103
11 8 -1.2511 4.4581 -2.6276
12 7 -0.2770 4.9212 -4.5666
13 6 -1.4701 5.4517 -5.0881
14 6 -2.7006 5.5430 -4.4131
15 7 -3.5744 6.0905 -5.2196
16 7 -2.9390 6.3699 -6.4362
17 6 -3.5207 6.9463 -7.5385
18 1 -2.9360 7.1174 -8.4303
19 6 -4.8619 7.3095 -7.5065
20 7 -5.5725 7.1019 -6.4223
21 14 -5.6534 8.0929 -9.0063
22 1 -6.2180 7.0322 -9.8789
23 1 -6.7401 9.0070 -8.5718
24 1 -4.6313 8.8623 -9.7603
25 6 -1.6375 5.9723 -6.3297
26 6 1.4530 2.5945 -3.5345
27 6 2.0245 1.6788 -2.4737
28 8 2.7184 0.7088 -2.6941
29 1 -0.3632 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5137 -0.8900
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5139 0.8899
34 1 1.6053 1.9815 0.8419
35 1 3.8571 0.8801 1.0113
36 1 4.0029 0.9837 -0.7596
37 1 3.6263 3.3458 1.1366
38 1 5.1508 2.8864 0.3402
39 1 3.7722 3.4494 -0.6345
40 1 1.1153 4.0250 -0.5844
41 1 -0.2398 3.0277 -1.1919
42 1 0.5245 4.9018 -5.1126
43 1 -2.8922 5.2169 -3.4015
44 1 -6.5087 7.3551 -6.4000
45 1 -0.8801 6.0547 -7.0951
46 1 0.5885 2.1327 -4.0114
47 1 2.2126 2.8409 -4.2763
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000747476074.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:59:41
Heat of formation + Delta-G solvation = 4.189317 kcal
Electronic energy + Delta-G solvation = -28892.852710 eV
Core-core repulsion = 24884.299300 eV
Total energy + Delta-G solvation = -4008.553410 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 334.179 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.08628 -39.84987 -38.64681 -36.77367 -35.68370 -34.30838 -33.21200 -32.32794
-31.20777 -30.22881 -27.98483 -27.69683 -26.62516 -24.98534 -23.21743 -22.25825
-22.20362 -21.00874 -19.99284 -19.47181 -18.97510 -17.74998 -17.17983 -16.88772
-15.97540 -15.51477 -15.43069 -15.20374 -14.76897 -14.63236 -14.54325 -14.11133
-13.93192 -13.65121 -13.41414 -13.27591 -13.19446 -12.97922 -12.89832 -12.80417
-12.67692 -11.85236 -11.76580 -11.67871 -11.56542 -11.44001 -11.34913 -11.27716
-11.13939 -11.07015 -11.01194 -10.97635 -10.55683 -10.22832 -9.80229 -9.26044
-9.20658 -8.84835 -8.77517 -8.09937 -6.75469 -6.58752 -4.26258 2.47779
2.69280 2.77302 2.98733 3.03200 3.08355 3.46587 3.62592 3.83201
4.12343 4.19701 4.37036 4.49806 4.63445 4.72707 4.73009 4.82852
4.89761 4.99407 5.02415 5.14231 5.22549 5.24049 5.27310 5.34200
5.42713 5.54010 5.61896 5.63765 5.69975 5.77615 5.80939 5.88530
5.96878 6.01466 6.12304 6.20561 6.40590 6.49575 6.84882 6.91199
6.99635 7.05246 7.19853 7.82280 8.06381 8.10110 8.23417 8.57014
8.76806 9.34112 9.63269 10.37178
Molecular weight = 334.18amu
Principal moments of inertia in cm(-1)
A = 0.028428 B = 0.002193 C = 0.002151
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 984.697816 B =12762.259942 C =13012.926956
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.141 4.141
3 C 0.160 3.840
4 C -0.141 4.141
5 C -0.148 4.148
6 N -0.609 5.609
7 C 0.118 3.882
8 C -0.118 4.118
9 H 0.114 0.886
10 C 0.509 3.491
11 O -0.531 6.531
12 N -0.618 5.618
13 C -0.063 4.063
14 C -0.032 4.032
15 N -0.261 5.261
16 N -0.142 5.142
17 C -0.323 4.323
18 H 0.116 0.884
19 C 0.046 3.954
20 N -0.770 5.770
21 Si 0.935 3.065
22 H -0.270 1.270
23 H -0.276 1.276
24 H -0.264 1.264
25 C -0.083 4.083
26 C -0.148 4.148
27 C 0.523 3.477
28 O -0.531 6.531
29 H 0.053 0.947
30 H 0.053 0.947
31 H 0.056 0.944
32 H 0.079 0.921
33 H 0.071 0.929
34 H 0.088 0.912
35 H 0.071 0.929
36 H 0.079 0.921
37 H 0.052 0.948
38 H 0.053 0.947
39 H 0.054 0.946
40 H 0.083 0.917
41 H 0.094 0.906
42 H 0.398 0.602
43 H 0.176 0.824
44 H 0.275 0.725
45 H 0.146 0.854
46 H 0.110 0.890
47 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.796 -7.639 10.048 20.219
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.179 4.179
3 C 0.058 3.942
4 C -0.179 4.179
5 C -0.206 4.206
6 N -0.343 5.343
7 C -0.005 4.005
8 C -0.140 4.140
9 H 0.132 0.868
10 C 0.294 3.706
11 O -0.408 6.408
12 N -0.260 5.260
13 C -0.168 4.168
14 C -0.208 4.208
15 N -0.092 5.092
16 N 0.091 4.909
17 C -0.455 4.455
18 H 0.134 0.866
19 C -0.171 4.171
20 N -0.396 5.396
21 Si 0.758 3.242
22 H -0.196 1.196
23 H -0.201 1.201
24 H -0.188 1.188
25 C -0.234 4.234
26 C -0.188 4.188
27 C 0.311 3.689
28 O -0.408 6.408
29 H 0.072 0.928
30 H 0.072 0.928
31 H 0.075 0.925
32 H 0.097 0.903
33 H 0.089 0.911
34 H 0.106 0.894
35 H 0.090 0.910
36 H 0.097 0.903
37 H 0.071 0.929
38 H 0.072 0.928
39 H 0.073 0.927
40 H 0.101 0.899
41 H 0.112 0.888
42 H 0.231 0.769
43 H 0.193 0.807
44 H 0.086 0.914
45 H 0.163 0.837
46 H 0.128 0.872
47 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 14.003 -7.734 10.461 19.113
hybrid contribution 0.951 0.208 -0.913 1.334
sum 14.953 -7.526 9.549 19.272
Atomic orbital electron populations
1.21732 0.95287 1.01662 1.02038 1.21949 0.96575 0.96042 1.03362
1.21079 0.94673 0.93350 0.85085 1.21946 0.94868 0.97881 1.03239
1.21727 1.00745 0.96405 1.01698 1.48362 1.50652 1.29222 1.06104
1.22017 0.96608 0.86308 0.95602 1.22171 0.97849 0.97959 0.96047
0.86840 1.19773 0.89250 0.79717 0.81896 1.90617 1.34948 1.56717
1.58538 1.42449 1.11473 1.58563 1.13473 1.17252 0.87609 1.16632
0.95313 1.24105 0.90113 1.05544 1.01009 1.78265 1.18851 1.21692
0.90391 1.44555 1.04141 1.32900 1.09312 1.19873 0.94995 1.39678
0.90971 0.86600 1.25644 0.96439 0.96540 0.98491 1.70212 1.08136
1.35450 1.25805 0.85829 0.79212 0.79099 0.80029 1.19568 1.20074
1.18797 1.21270 0.89764 1.14127 0.98256 1.22401 1.03638 0.94678
0.98125 1.20698 0.79301 0.84741 0.84149 1.90687 1.38378 1.27967
1.83811 0.92775 0.92801 0.92500 0.90263 0.91067 0.89351 0.91017
0.90254 0.92854 0.92811 0.92681 0.89901 0.88786 0.76912 0.80734
0.91432 0.83697 0.87186 0.87362
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.41 9.80 37.16 0.36 -1.05 16
2 C -0.14 -1.29 5.36 -26.73 -0.14 -1.44 16
3 C 0.16 1.40 2.25 -67.93 -0.15 1.25 16
4 C -0.14 -1.18 5.36 -26.73 -0.14 -1.32 16
5 C -0.15 -1.12 9.80 37.16 0.36 -0.75 16
6 N -0.61 -6.03 1.74 -164.82 -0.29 -6.32 16
7 C 0.12 1.16 6.64 -3.12 -0.02 1.14 16
8 C -0.12 -1.18 3.54 -90.14 -0.32 -1.50 16
9 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16
10 C 0.51 7.64 7.03 -10.99 -0.08 7.56 16
11 O -0.53 -10.07 12.68 5.54 0.07 -10.00 16
12 N -0.62 -9.82 5.45 -10.00 -0.05 -9.88 16
13 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 16
14 C -0.03 -0.82 10.85 -17.04 -0.18 -1.00 16
15 N -0.26 -7.42 10.40 30.80 0.32 -7.10 16
16 N -0.14 -3.80 3.74 -11.41 -0.04 -3.84 16
17 C -0.32 -8.39 10.25 -14.82 -0.15 -8.54 16
18 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16
19 C 0.05 1.17 5.50 -17.51 -0.10 1.08 16
20 N -0.77 -21.23 11.81 55.49 0.66 -20.57 16
21 Si 0.93 18.64 29.55 -169.99 -5.02 13.62 16
22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16
23 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16
24 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16
25 C -0.08 -1.88 11.49 -16.39 -0.19 -2.07 16
26 C -0.15 -1.47 6.40 -26.71 -0.17 -1.64 16
27 C 0.52 6.14 7.37 -10.83 -0.08 6.06 16
28 O -0.53 -7.81 15.02 5.55 0.08 -7.73 16
29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
31 H 0.06 0.63 7.75 -51.93 -0.40 0.23 16
32 H 0.08 0.92 6.62 -51.93 -0.34 0.57 16
33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
34 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16
35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
36 H 0.08 0.85 6.65 -51.93 -0.35 0.50 16
37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
38 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16
39 H 0.05 0.45 7.75 -51.93 -0.40 0.05 16
40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
41 H 0.09 1.11 7.01 -51.93 -0.36 0.75 16
42 H 0.40 4.75 8.83 -40.82 -0.36 4.39 16
43 H 0.18 4.36 5.92 -52.49 -0.31 4.05 16
44 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16
45 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16
46 H 0.11 1.20 7.89 -51.93 -0.41 0.79 16
47 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16
LS Contribution 384.23 15.07 5.79 5.79
Total: -1.00 -33.55 384.23 -7.20 -40.74
By element:
Atomic # 1 Polarization: 16.58 SS G_CDS: -7.13 Total: 9.45 kcal
Atomic # 6 Polarization: -2.59 SS G_CDS: -1.58 Total: -4.17 kcal
Atomic # 7 Polarization: -48.30 SS G_CDS: 0.59 Total: -47.71 kcal
Atomic # 8 Polarization: -17.88 SS G_CDS: 0.15 Total: -17.73 kcal
Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -33.55 -7.20 -40.74 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000747476074.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.933 kcal
(2) G-P(sol) polarization free energy of solvation -33.546 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.387 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.189 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds