Wall clock time and date at job start Tue Mar 31 2020 17:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47052 * 2 1 4 4 C 1.52996 * 109.46870 * 175.00032 * 3 2 1 5 5 C 1.53003 * 109.46638 * 185.00032 * 4 3 2 6 6 N 1.46494 * 109.46850 * 295.00209 * 3 2 1 7 7 C 1.46766 * 124.35111 * 120.00477 * 6 3 2 8 8 C 1.54480 * 105.47721 * 163.00018 * 7 6 3 9 9 H 1.08998 * 110.96692 * 267.25738 * 8 7 6 10 10 C 1.50698 * 110.96808 * 143.52948 * 8 7 6 11 11 O 1.21303 * 120.00012 * 3.09273 * 10 8 7 12 12 N 1.34777 * 119.99538 * 183.08619 * 10 8 7 13 13 C 1.40597 * 119.99665 * 179.72549 * 12 10 8 14 14 C 1.40644 * 126.08126 * 0.30590 * 13 12 10 15 15 N 1.30914 * 108.38647 * 180.02562 * 14 13 12 16 16 N 1.40064 * 108.40789 * 359.97438 * 15 14 13 17 17 C 1.37316 * 126.07195 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00299 * 180.02562 * 17 16 15 19 19 C 1.38983 * 120.00012 * 0.02562 * 17 16 15 20 20 N 1.31294 * 120.00088 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00322 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46976 * 90.00114 * 21 19 17 23 23 H 1.48498 * 109.47115 * 210.00354 * 21 19 17 24 24 H 1.48498 * 109.46954 * 330.00270 * 21 19 17 25 25 C 1.35680 * 126.07949 * 179.97438 * 13 12 10 26 26 C 1.54630 * 101.79585 * 25.39326 * 8 7 6 27 27 C 1.34420 * 124.35060 * 300.01937 * 6 3 2 28 28 O 1.21284 * 124.94063 * 0.36530 * 27 6 3 29 29 H 1.09000 * 109.46572 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46746 * 299.99611 * 1 2 3 31 31 H 1.08993 * 109.47167 * 60.00382 * 1 2 3 32 32 H 1.09002 * 109.47394 * 240.00112 * 2 1 3 33 33 H 1.09002 * 109.47601 * 120.00312 * 2 1 3 34 34 H 1.09003 * 109.46749 * 55.00070 * 3 2 1 35 35 H 1.08997 * 109.47668 * 304.99786 * 4 3 2 36 36 H 1.08995 * 109.47394 * 65.00266 * 4 3 2 37 37 H 1.09003 * 109.47321 * 60.00592 * 5 4 3 38 38 H 1.09008 * 109.46923 * 180.02562 * 5 4 3 39 39 H 1.09001 * 109.47481 * 299.99788 * 5 4 3 40 40 H 1.08997 * 110.24646 * 43.99274 * 7 6 3 41 41 H 1.09001 * 110.24115 * 282.00094 * 7 6 3 42 42 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 43 43 H 1.07997 * 125.81118 * 0.02562 * 14 13 12 44 44 H 0.97004 * 120.00415 * 180.02562 * 20 19 17 45 45 H 1.07994 * 126.24810 * 359.97244 * 25 13 12 46 46 H 1.09001 * 110.48679 * 93.90232 * 26 8 7 47 47 H 1.09000 * 110.48802 * 216.53820 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4443 0.1257 5 6 4.0644 2.8851 0.2511 6 7 1.6524 2.0975 -1.2518 7 6 0.8075 3.2948 -1.3329 8 6 1.0286 3.8598 -2.7535 9 1 1.8235 4.6056 -2.7574 10 6 -0.2487 4.4341 -3.3103 11 8 -1.2511 4.4581 -2.6276 12 7 -0.2770 4.9212 -4.5666 13 6 -1.4701 5.4517 -5.0881 14 6 -2.7006 5.5430 -4.4131 15 7 -3.5744 6.0905 -5.2196 16 7 -2.9390 6.3699 -6.4362 17 6 -3.5207 6.9463 -7.5385 18 1 -2.9360 7.1174 -8.4303 19 6 -4.8619 7.3095 -7.5065 20 7 -5.5725 7.1019 -6.4223 21 14 -5.6534 8.0929 -9.0063 22 1 -6.2180 7.0322 -9.8789 23 1 -6.7401 9.0070 -8.5718 24 1 -4.6313 8.8623 -9.7603 25 6 -1.6375 5.9723 -6.3297 26 6 1.4530 2.5945 -3.5345 27 6 2.0245 1.6788 -2.4737 28 8 2.7184 0.7088 -2.6941 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6053 1.9815 0.8419 35 1 3.8571 0.8801 1.0113 36 1 4.0029 0.9837 -0.7596 37 1 3.6263 3.3458 1.1366 38 1 5.1508 2.8864 0.3402 39 1 3.7722 3.4494 -0.6345 40 1 1.1153 4.0250 -0.5844 41 1 -0.2398 3.0277 -1.1919 42 1 0.5245 4.9018 -5.1126 43 1 -2.8922 5.2169 -3.4015 44 1 -6.5087 7.3551 -6.4000 45 1 -0.8801 6.0547 -7.0951 46 1 0.5885 2.1327 -4.0114 47 1 2.2126 2.8409 -4.2763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747476074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:40 Heat of formation + Delta-G solvation = -17.042458 kcal Electronic energy + Delta-G solvation = -28893.773388 eV Core-core repulsion = 24884.299300 eV Total energy + Delta-G solvation = -4009.474088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.08990 -41.46443 -40.06465 -37.65333 -36.60034 -35.89424 -34.93897 -33.01096 -32.35692 -31.91356 -29.57648 -28.67566 -27.45987 -26.72776 -24.35814 -23.02787 -22.89532 -22.78352 -21.43456 -21.04588 -19.87820 -19.28668 -18.39346 -17.71062 -17.42493 -17.10036 -16.70714 -16.32547 -15.97535 -15.70354 -15.41098 -15.34793 -15.15911 -14.87839 -14.79449 -14.60769 -14.18196 -13.94962 -13.80812 -13.78843 -13.46119 -13.39222 -13.26886 -12.90238 -12.83592 -12.54562 -12.52505 -12.39031 -12.08512 -12.05891 -11.87205 -11.80085 -11.77377 -11.72880 -10.98907 -10.87001 -10.75485 -10.48087 -10.07186 -9.62311 -8.49323 -8.45088 -6.21745 1.23069 1.40940 1.51678 1.58041 1.58582 1.88247 1.90236 2.11302 2.33988 2.55364 2.91559 3.11151 3.26877 3.38144 3.74196 3.85343 3.93161 4.03420 4.14304 4.24992 4.34503 4.45270 4.47703 4.55531 4.56848 4.60118 4.64964 4.66429 4.79226 4.89881 4.92392 5.00271 5.03092 5.04155 5.11392 5.12859 5.18014 5.23173 5.32877 5.33620 5.41150 5.51344 5.72634 5.98671 6.15952 6.35277 6.76831 6.78395 7.18223 7.41263 7.50048 7.72365 8.54266 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028428 B = 0.002193 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.697816 B =12762.259942 C =13012.926956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.155 3.845 4 C -0.136 4.136 5 C -0.146 4.146 6 N -0.602 5.602 7 C 0.118 3.882 8 C -0.099 4.099 9 H 0.153 0.847 10 C 0.512 3.488 11 O -0.570 6.570 12 N -0.611 5.611 13 C -0.042 4.042 14 C -0.058 4.058 15 N -0.312 5.312 16 N -0.170 5.170 17 C -0.353 4.353 18 H 0.140 0.860 19 C -0.007 4.007 20 N -0.826 5.826 21 Si 1.017 2.983 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.244 1.244 25 C -0.080 4.080 26 C -0.143 4.143 27 C 0.518 3.482 28 O -0.565 6.565 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.421 0.579 43 H 0.170 0.830 44 H 0.275 0.725 45 H 0.187 0.813 46 H 0.098 0.902 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.262 -7.017 9.749 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.053 3.947 4 C -0.174 4.174 5 C -0.203 4.203 6 N -0.334 5.334 7 C -0.005 4.005 8 C -0.120 4.120 9 H 0.171 0.829 10 C 0.299 3.701 11 O -0.449 6.449 12 N -0.256 5.256 13 C -0.149 4.149 14 C -0.234 4.234 15 N -0.144 5.144 16 N 0.060 4.940 17 C -0.484 4.484 18 H 0.157 0.843 19 C -0.218 4.218 20 N -0.454 5.454 21 Si 0.836 3.164 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.167 1.167 25 C -0.230 4.230 26 C -0.183 4.183 27 C 0.306 3.694 28 O -0.445 6.445 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.125 0.875 41 H 0.091 0.909 42 H 0.258 0.742 43 H 0.187 0.813 44 H 0.085 0.915 45 H 0.204 0.796 46 H 0.116 0.884 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 16.530 -7.119 10.171 20.673 hybrid contribution 0.306 -0.112 -0.670 0.745 sum 16.836 -7.232 9.501 20.640 Atomic orbital electron populations 1.21705 0.95589 1.01645 1.01497 1.21914 0.96181 0.96481 1.02974 1.21278 0.95241 0.93099 0.85094 1.21887 0.94158 0.98649 1.02692 1.21709 1.01075 0.95552 1.01962 1.48412 1.49802 1.29001 1.06207 1.22022 0.95544 0.86668 0.96238 1.22103 0.95739 0.98599 0.95576 0.82933 1.20638 0.90339 0.78130 0.81002 1.90617 1.37039 1.57763 1.59477 1.42408 1.10445 1.58468 1.14244 1.17298 0.88477 1.14583 0.94506 1.24204 0.91756 1.06452 1.00972 1.78153 1.21024 1.23342 0.91922 1.44824 1.05512 1.34449 1.09166 1.20576 0.96000 1.40197 0.91669 0.84256 1.26845 0.96786 0.96518 1.01687 1.70395 1.08510 1.37772 1.28717 0.84621 0.78124 0.78002 0.75646 1.19037 1.20301 1.16700 1.22037 0.89288 1.12357 0.99352 1.22406 1.03830 0.93884 0.98169 1.20969 0.78949 0.84499 0.84980 1.90677 1.40053 1.29430 1.84343 0.92630 0.91540 0.94709 0.92964 0.89095 0.87382 0.89486 0.92872 0.91566 0.92466 0.93295 0.87465 0.90941 0.74156 0.81342 0.91494 0.79562 0.88358 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.80 71.98 0.71 -1.98 16 2 C -0.14 -2.39 5.36 30.60 0.16 -2.23 16 3 C 0.15 2.41 2.25 44.99 0.10 2.52 16 4 C -0.14 -2.00 5.36 30.59 0.16 -1.84 16 5 C -0.15 -1.79 9.80 71.98 0.71 -1.09 16 6 N -0.60 -10.93 1.74 -793.96 -1.38 -12.31 16 7 C 0.12 2.08 6.64 86.83 0.58 2.66 16 8 C -0.10 -1.69 3.54 -10.48 -0.04 -1.72 16 9 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 10 C 0.51 14.49 7.03 87.66 0.62 15.11 16 11 O -0.57 -21.58 12.68 -3.10 -0.04 -21.62 16 12 N -0.61 -18.06 5.45 -303.93 -1.66 -19.72 16 13 C -0.04 -1.82 6.90 37.73 0.26 -1.56 16 14 C -0.06 -3.05 10.85 85.42 0.93 -2.12 16 15 N -0.31 -18.45 10.40 -56.47 -0.59 -19.04 16 16 N -0.17 -9.25 3.74 -190.02 -0.71 -9.96 16 17 C -0.35 -18.42 10.25 84.01 0.86 -17.56 16 18 H 0.14 6.28 7.83 -2.91 -0.02 6.25 16 19 C -0.01 -0.36 5.50 84.95 0.47 0.11 16 20 N -0.83 -47.39 11.81 21.66 0.26 -47.14 16 21 Si 1.02 38.25 29.55 68.60 2.03 40.28 16 22 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 23 H -0.28 -10.39 7.11 99.48 0.71 -9.69 16 24 H -0.24 -8.28 7.11 99.48 0.71 -7.58 16 25 C -0.08 -3.53 11.49 83.37 0.96 -2.57 16 26 C -0.14 -2.50 6.40 30.61 0.20 -2.31 16 27 C 0.52 11.50 7.37 87.92 0.65 12.15 16 28 O -0.57 -16.46 15.02 -3.04 -0.05 -16.51 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.03 0.78 7.75 -2.39 -0.02 0.76 16 32 H 0.05 1.22 6.62 -2.39 -0.02 1.20 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.30 8.07 -2.39 -0.02 1.28 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.09 6.65 -2.39 -0.02 1.08 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.05 0.66 7.75 -2.39 -0.02 0.64 16 40 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.66 7.01 -2.39 -0.02 1.64 16 42 H 0.42 8.51 8.83 -92.71 -0.82 7.69 16 43 H 0.17 8.83 5.92 -2.91 -0.02 8.81 16 44 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.19 6.39 8.06 -2.91 -0.02 6.36 16 46 H 0.10 2.02 7.89 -2.39 -0.02 2.00 16 47 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -78.49 384.23 5.35 -73.14 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.17 Total: 35.32 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 7.31 Total: -2.44 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -4.08 Total: -108.17 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.09 Total: -38.13 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -78.49 5.35 -73.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747476074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.097 kcal (2) G-P(sol) polarization free energy of solvation -78.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds