Wall clock time and date at job start Tue Mar 31 2020 19:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46726 * 2 1 4 4 H 1.08995 * 109.47677 * 55.00147 * 3 2 1 5 5 C 1.50708 * 109.46737 * 174.99919 * 3 2 1 6 6 H 1.08001 * 120.00075 * 120.00473 * 5 3 2 7 7 C 1.37876 * 119.99712 * 299.99289 * 5 3 2 8 8 N 1.31518 * 119.99914 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 120.00357 * 0.02562 * 7 5 3 10 10 H 1.48492 * 109.47426 * 89.99457 * 9 7 5 11 11 H 1.48501 * 109.47075 * 209.99592 * 9 7 5 12 12 H 1.48507 * 109.47081 * 329.99323 * 9 7 5 13 13 N 1.46495 * 109.47232 * 294.99352 * 3 2 1 14 14 C 1.34777 * 119.99907 * 85.00116 * 13 3 2 15 15 O 1.21362 * 119.99833 * 0.02562 * 14 13 3 16 16 C 1.49320 * 120.00284 * 180.02562 * 14 13 3 17 17 O 1.21393 * 120.00122 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00193 * 180.02562 * 16 14 13 19 19 C 1.39887 * 120.00407 * 184.24607 * 18 16 14 20 20 C 1.38954 * 120.51746 * 334.49306 * 19 18 16 21 21 C 1.38768 * 118.44276 * 180.29545 * 20 19 18 22 22 C 1.38077 * 119.39065 * 359.42828 * 21 20 19 23 23 C 1.50694 * 119.49638 * 180.27620 * 22 21 20 24 24 N 1.32009 * 121.00483 * 0.58653 * 22 21 20 25 25 C 1.32295 * 121.70512 * 359.71075 * 24 22 21 26 26 N 1.39121 * 119.75414 * 179.97438 * 25 24 22 27 27 C 1.46899 * 111.00070 * 343.41374 * 26 25 24 28 28 C 1.46897 * 110.99723 * 107.36936 * 26 25 24 29 29 H 1.09000 * 109.47060 * 60.00469 * 1 2 3 30 30 H 1.09006 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47733 * 300.00089 * 1 2 3 32 32 H 1.08994 * 109.47321 * 239.99764 * 2 1 3 33 33 H 1.09000 * 109.47060 * 119.99531 * 2 1 3 34 34 H 0.96995 * 120.00390 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00733 * 265.00418 * 13 3 2 36 36 H 0.97005 * 120.00362 * 4.24347 * 18 16 14 37 37 H 1.08003 * 120.78018 * 0.02562 * 20 19 18 38 38 H 1.07994 * 120.30729 * 179.72243 * 21 20 19 39 39 H 1.08997 * 109.47360 * 270.30623 * 23 22 21 40 40 H 1.09004 * 109.47416 * 30.30212 * 23 22 21 41 41 H 1.08997 * 109.47396 * 150.30430 * 23 22 21 42 42 H 1.09006 * 109.47088 * 60.00281 * 27 26 25 43 43 H 1.08995 * 109.47053 * 179.97438 * 27 26 25 44 44 H 1.08993 * 109.47429 * 299.99833 * 27 26 25 45 45 H 1.09000 * 109.47694 * 62.78875 * 28 26 25 46 46 H 1.09003 * 109.46970 * 182.79080 * 28 26 25 47 47 H 1.09004 * 109.47402 * 302.78430 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1431 0.8785 1.2281 8 7 5.4538 0.8805 1.3365 9 14 3.0962 0.1092 2.5702 10 1 2.8753 -1.3269 2.2637 11 1 3.7935 0.2351 3.8753 12 1 1.7875 0.8077 2.6388 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3671 15 8 -0.3399 2.6325 -0.4337 16 6 0.0398 3.3313 -2.6432 17 8 0.8148 3.3627 -3.5771 18 7 -1.1773 3.8986 -2.7583 19 6 -1.5816 4.4450 -3.9809 20 6 -0.6401 4.8944 -4.8988 21 6 -1.0892 5.4345 -6.0955 22 6 -2.4460 5.4986 -6.3432 23 6 -2.9361 6.0789 -7.6447 24 7 -3.3207 5.0648 -5.4547 25 6 -2.9389 4.5479 -4.2982 26 7 -3.8956 4.1036 -3.3912 27 6 -5.2222 4.6429 -3.7187 28 6 -3.9237 2.6361 -3.3323 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8769 0.4822 2.1131 35 1 2.2719 2.1231 -1.9978 36 1 -1.7730 3.9280 -1.9933 37 1 0.4163 4.8289 -4.6839 38 1 -0.3838 5.7970 -6.8285 39 1 -3.0833 7.1529 -7.5311 40 1 -2.1985 5.8940 -8.4256 41 1 -3.8809 5.6097 -7.9189 42 1 -5.5103 4.3170 -4.7182 43 1 -5.9510 4.2796 -2.9943 44 1 -5.1897 5.7319 -3.6869 45 1 -2.9629 2.2683 -2.9722 46 1 -4.7134 2.3148 -2.6532 47 1 -4.1159 2.2361 -4.3280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784195961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:36 Heat of formation + Delta-G solvation = -7.103277 kcal Electronic energy + Delta-G solvation = -29350.189650 eV Core-core repulsion = 25341.146557 eV Total energy + Delta-G solvation = -4009.043093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.44959 -40.15391 -38.50383 -37.34784 -35.83984 -35.16585 -32.47738 -31.91020 -31.68397 -31.61279 -28.21992 -27.85057 -27.41798 -25.47787 -24.34653 -22.87559 -22.41209 -21.64134 -20.58982 -19.80853 -18.97957 -17.46538 -17.12319 -16.97611 -16.38263 -15.97378 -15.71881 -15.59681 -15.33373 -14.80299 -14.41715 -14.29361 -14.25591 -14.04338 -13.62822 -13.42651 -13.09832 -12.90296 -12.76737 -12.50860 -12.44191 -12.39578 -12.13867 -12.05512 -11.97919 -11.90988 -11.35616 -11.20982 -10.99066 -10.96096 -10.73216 -10.08704 -10.02520 -9.93908 -9.61996 -9.35237 -9.25275 -9.00820 -8.85120 -8.32826 -8.04405 -6.27366 -4.31534 0.72746 1.07414 1.71855 2.47304 3.17726 3.21825 3.30484 3.32991 3.41399 3.63532 3.88357 4.15782 4.24418 4.61621 4.71093 4.83048 4.85810 5.01871 5.04879 5.06223 5.16423 5.23723 5.32647 5.36527 5.42189 5.57118 5.62954 5.70281 5.72873 5.83155 5.90852 5.96265 6.02978 6.06239 6.33828 6.44607 6.50147 6.56493 6.65995 6.76838 6.85630 6.96059 7.07960 7.14231 7.34562 7.64188 7.74737 7.98037 8.33840 8.46829 8.73014 9.30896 10.84465 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.002832 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.503723 B = 9885.322352 C =10864.428142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.055 0.945 5 C -0.540 4.540 6 H 0.083 0.917 7 C 0.081 3.919 8 N -0.888 5.888 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.259 1.259 13 N -0.659 5.659 14 C 0.497 3.503 15 O -0.527 6.527 16 C 0.506 3.494 17 O -0.504 6.504 18 N -0.633 5.633 19 C 0.099 3.901 20 C -0.075 4.075 21 C -0.167 4.167 22 C 0.122 3.878 23 C -0.099 4.099 24 N -0.497 5.497 25 C 0.282 3.718 26 N -0.488 5.488 27 C 0.037 3.963 28 C 0.025 3.975 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.269 0.731 35 H 0.408 0.592 36 H 0.430 0.570 37 H 0.168 0.832 38 H 0.139 0.861 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.627 7.134 -13.939 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.308 5.308 14 C 0.276 3.724 15 O -0.405 6.405 16 C 0.289 3.711 17 O -0.379 6.379 18 N -0.279 5.279 19 C -0.001 4.001 20 C -0.103 4.103 21 C -0.188 4.188 22 C -0.017 4.017 23 C -0.156 4.156 24 N -0.211 5.211 25 C 0.048 3.952 26 N -0.208 5.208 27 C -0.111 4.111 28 C -0.122 4.122 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.244 0.756 36 H 0.269 0.731 37 H 0.185 0.815 38 H 0.156 0.844 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -19.184 7.215 -13.425 24.501 hybrid contribution 0.299 -0.771 0.287 0.876 sum -18.885 6.444 -13.137 23.890 Atomic orbital electron populations 1.21891 0.96885 0.99426 1.02049 1.22316 0.94403 0.99574 1.01641 1.19366 0.96235 0.88704 0.81860 0.92705 1.21001 0.88186 1.40376 1.08186 0.89870 1.24819 0.94902 0.95039 0.97598 1.69858 1.08685 1.44056 1.29811 0.86915 0.80941 0.80003 0.80970 1.20118 1.22013 1.18385 1.46099 1.13557 1.52504 1.18685 1.19562 0.84356 0.81408 0.87105 1.90757 1.51171 1.59283 1.39300 1.20940 0.81722 0.78893 0.89553 1.90663 1.50442 1.56871 1.39882 1.43125 1.17611 1.55059 1.12143 1.18278 0.92180 1.01105 0.88555 1.22085 1.01860 0.93772 0.92591 1.21847 0.96152 1.02368 0.98434 1.21024 0.89617 0.95919 0.95146 1.20660 1.02197 1.00851 0.91922 1.67442 1.38969 1.13850 1.00811 1.19496 0.89090 0.98076 0.88584 1.59526 1.07109 1.10319 1.43818 1.22234 0.87545 1.00901 1.00380 1.22524 1.04066 0.84179 1.01418 0.93326 0.94582 0.92604 0.91923 0.92296 0.92123 0.75626 0.73061 0.81499 0.84364 0.90533 0.90659 0.90796 0.93398 0.91113 0.91035 0.90578 0.89743 0.94362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.51 37.15 0.32 -2.39 16 2 C -0.14 -2.97 5.11 -26.73 -0.14 -3.11 16 3 C 0.24 5.46 1.83 -69.08 -0.13 5.33 16 4 H 0.06 1.34 6.63 -51.93 -0.34 1.00 16 5 C -0.54 -14.18 9.31 -34.44 -0.32 -14.50 16 6 H 0.08 2.33 7.98 -52.49 -0.42 1.91 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -25.78 13.96 55.43 0.77 -25.00 16 9 Si 0.88 20.91 24.41 -169.99 -4.15 16.76 16 10 H -0.27 -6.30 6.83 56.52 0.39 -5.91 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.26 -5.99 6.53 56.52 0.37 -5.63 16 13 N -0.66 -12.87 5.01 -55.41 -0.28 -13.14 16 14 C 0.50 8.91 6.45 -11.65 -0.08 8.84 16 15 O -0.53 -10.13 13.62 5.49 0.07 -10.05 16 16 C 0.51 7.92 7.78 -11.65 -0.09 7.83 16 17 O -0.50 -8.36 13.44 5.46 0.07 -8.29 16 18 N -0.63 -8.58 4.11 -10.06 -0.04 -8.62 16 19 C 0.10 1.30 6.30 -83.34 -0.52 0.78 16 20 C -0.08 -0.96 8.90 -39.12 -0.35 -1.31 16 21 C -0.17 -1.75 9.72 -39.44 -0.38 -2.14 16 22 C 0.12 1.28 6.78 -82.58 -0.56 0.72 16 23 C -0.10 -0.69 10.16 36.00 0.37 -0.33 16 24 N -0.50 -5.95 8.71 -8.48 -0.07 -6.02 16 25 C 0.28 3.50 6.06 -154.75 -0.94 2.56 16 26 N -0.49 -5.32 4.44 -188.75 -0.84 -6.16 16 27 C 0.04 0.33 8.87 60.06 0.53 0.87 16 28 C 0.02 0.24 9.26 60.06 0.56 0.80 16 29 H 0.05 0.87 5.65 -51.93 -0.29 0.58 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.31 3.21 -51.93 -0.17 1.14 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.41 7.60 8.01 -40.82 -0.33 7.27 16 36 H 0.43 5.57 7.50 -40.82 -0.31 5.27 16 37 H 0.17 2.27 5.62 -52.48 -0.29 1.98 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.45 7.69 -51.93 -0.40 0.05 16 43 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.83 6.75 -51.93 -0.35 0.48 16 46 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 47 H 0.04 0.38 8.13 -51.93 -0.42 -0.05 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -29.91 374.99 -7.35 -37.26 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -6.71 Total: 11.55 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.83 Total: 6.06 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.46 Total: -58.95 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.15 Total: -18.34 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.15 Total: 16.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.91 -7.35 -37.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784195961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.155 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds