Wall clock time and date at job start Tue Mar 31 2020 19:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46726 * 2 1 4 4 H 1.08995 * 109.47677 * 55.00147 * 3 2 1 5 5 C 1.50708 * 109.46737 * 174.99919 * 3 2 1 6 6 H 1.08001 * 120.00075 * 120.00473 * 5 3 2 7 7 C 1.37876 * 119.99712 * 299.99289 * 5 3 2 8 8 N 1.31518 * 119.99914 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 120.00357 * 0.02562 * 7 5 3 10 10 H 1.48492 * 109.47426 * 89.99457 * 9 7 5 11 11 H 1.48501 * 109.47075 * 209.99592 * 9 7 5 12 12 H 1.48507 * 109.47081 * 329.99323 * 9 7 5 13 13 N 1.46495 * 109.47232 * 294.99352 * 3 2 1 14 14 C 1.34777 * 119.99907 * 85.00116 * 13 3 2 15 15 O 1.21362 * 119.99833 * 0.02562 * 14 13 3 16 16 C 1.49320 * 120.00284 * 180.02562 * 14 13 3 17 17 O 1.21393 * 120.00122 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00193 * 180.02562 * 16 14 13 19 19 C 1.39887 * 120.00407 * 184.24607 * 18 16 14 20 20 C 1.38954 * 120.51746 * 334.49306 * 19 18 16 21 21 C 1.38768 * 118.44276 * 180.29545 * 20 19 18 22 22 C 1.38077 * 119.39065 * 359.42828 * 21 20 19 23 23 C 1.50694 * 119.49638 * 180.27620 * 22 21 20 24 24 N 1.32009 * 121.00483 * 0.58653 * 22 21 20 25 25 C 1.32295 * 121.70512 * 359.71075 * 24 22 21 26 26 N 1.39121 * 119.75414 * 179.97438 * 25 24 22 27 27 C 1.46899 * 111.00070 * 343.41374 * 26 25 24 28 28 C 1.46897 * 110.99723 * 107.36936 * 26 25 24 29 29 H 1.09000 * 109.47060 * 60.00469 * 1 2 3 30 30 H 1.09006 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47733 * 300.00089 * 1 2 3 32 32 H 1.08994 * 109.47321 * 239.99764 * 2 1 3 33 33 H 1.09000 * 109.47060 * 119.99531 * 2 1 3 34 34 H 0.96995 * 120.00390 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00733 * 265.00418 * 13 3 2 36 36 H 0.97005 * 120.00362 * 4.24347 * 18 16 14 37 37 H 1.08003 * 120.78018 * 0.02562 * 20 19 18 38 38 H 1.07994 * 120.30729 * 179.72243 * 21 20 19 39 39 H 1.08997 * 109.47360 * 270.30623 * 23 22 21 40 40 H 1.09004 * 109.47416 * 30.30212 * 23 22 21 41 41 H 1.08997 * 109.47396 * 150.30430 * 23 22 21 42 42 H 1.09006 * 109.47088 * 60.00281 * 27 26 25 43 43 H 1.08995 * 109.47053 * 179.97438 * 27 26 25 44 44 H 1.08993 * 109.47429 * 299.99833 * 27 26 25 45 45 H 1.09000 * 109.47694 * 62.78875 * 28 26 25 46 46 H 1.09003 * 109.46970 * 182.79080 * 28 26 25 47 47 H 1.09004 * 109.47402 * 302.78430 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1431 0.8785 1.2281 8 7 5.4538 0.8805 1.3365 9 14 3.0962 0.1092 2.5702 10 1 2.8753 -1.3269 2.2637 11 1 3.7935 0.2351 3.8753 12 1 1.7875 0.8077 2.6388 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3671 15 8 -0.3399 2.6325 -0.4337 16 6 0.0398 3.3313 -2.6432 17 8 0.8148 3.3627 -3.5771 18 7 -1.1773 3.8986 -2.7583 19 6 -1.5816 4.4450 -3.9809 20 6 -0.6401 4.8944 -4.8988 21 6 -1.0892 5.4345 -6.0955 22 6 -2.4460 5.4986 -6.3432 23 6 -2.9361 6.0789 -7.6447 24 7 -3.3207 5.0648 -5.4547 25 6 -2.9389 4.5479 -4.2982 26 7 -3.8956 4.1036 -3.3912 27 6 -5.2222 4.6429 -3.7187 28 6 -3.9237 2.6361 -3.3323 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8769 0.4822 2.1131 35 1 2.2719 2.1231 -1.9978 36 1 -1.7730 3.9280 -1.9933 37 1 0.4163 4.8289 -4.6839 38 1 -0.3838 5.7970 -6.8285 39 1 -3.0833 7.1529 -7.5311 40 1 -2.1985 5.8940 -8.4256 41 1 -3.8809 5.6097 -7.9189 42 1 -5.5103 4.3170 -4.7182 43 1 -5.9510 4.2796 -2.9943 44 1 -5.1897 5.7319 -3.6869 45 1 -2.9629 2.2683 -2.9722 46 1 -4.7134 2.3148 -2.6532 47 1 -4.1159 2.2361 -4.3280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784195961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:35 Heat of formation + Delta-G solvation = -28.276664 kcal Electronic energy + Delta-G solvation = -29351.107797 eV Core-core repulsion = 25341.146557 eV Total energy + Delta-G solvation = -4009.961240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.51375 -41.36765 -39.87285 -38.15906 -37.39675 -36.40610 -34.43090 -33.26374 -32.84129 -32.46424 -29.66122 -28.96169 -28.28153 -26.54036 -25.50053 -24.47391 -23.54087 -22.54368 -22.02718 -21.32806 -20.31763 -18.80113 -18.47394 -17.98581 -17.65099 -17.48311 -17.11040 -16.84702 -16.40856 -16.03377 -15.75346 -15.38993 -15.18997 -15.07149 -14.97732 -14.85611 -14.36131 -14.12291 -13.80184 -13.70590 -13.64299 -13.46469 -13.21141 -13.06754 -12.99312 -12.89427 -12.82136 -12.71442 -12.55907 -12.36526 -11.97667 -11.86172 -11.39011 -11.29393 -11.04478 -10.88289 -10.84855 -10.46851 -10.01792 -9.95975 -8.95883 -8.38437 -6.46340 -0.27432 0.14786 0.49090 1.19735 1.29692 1.37567 1.46742 2.06234 2.26216 2.41158 2.57882 2.72444 2.96788 3.33287 3.39738 3.79579 3.91350 4.01412 4.19029 4.20777 4.29484 4.29931 4.37613 4.40775 4.53836 4.65512 4.68611 4.76637 4.82011 4.83397 4.87643 4.95121 4.99284 5.02330 5.07640 5.12012 5.16503 5.23613 5.27579 5.45797 5.49505 5.50647 5.64728 5.78341 6.05366 6.08414 6.44470 6.54381 6.67416 6.87420 6.95275 7.21379 8.76838 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.002832 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.503723 B = 9885.322352 C =10864.428142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 C 0.249 3.751 4 H 0.039 0.961 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.939 3.061 10 H -0.258 1.258 11 H -0.294 1.294 12 H -0.250 1.250 13 N -0.666 5.666 14 C 0.502 3.498 15 O -0.537 6.537 16 C 0.514 3.486 17 O -0.516 6.516 18 N -0.617 5.617 19 C 0.073 3.927 20 C -0.086 4.086 21 C -0.166 4.166 22 C 0.121 3.879 23 C -0.096 4.096 24 N -0.507 5.507 25 C 0.279 3.721 26 N -0.496 5.496 27 C 0.040 3.960 28 C 0.027 3.973 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.271 0.729 35 H 0.411 0.589 36 H 0.432 0.568 37 H 0.155 0.845 38 H 0.166 0.834 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.276 7.139 -14.949 26.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.145 3.855 4 H 0.057 0.943 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.171 4.171 8 N -0.572 5.572 9 Si 0.765 3.235 10 H -0.184 1.184 11 H -0.222 1.222 12 H -0.174 1.174 13 N -0.315 5.315 14 C 0.282 3.718 15 O -0.415 6.415 16 C 0.296 3.704 17 O -0.392 6.392 18 N -0.263 5.263 19 C -0.026 4.026 20 C -0.114 4.114 21 C -0.187 4.187 22 C -0.018 4.018 23 C -0.153 4.153 24 N -0.222 5.222 25 C 0.045 3.955 26 N -0.216 5.216 27 C -0.107 4.107 28 C -0.119 4.119 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.247 0.753 36 H 0.272 0.728 37 H 0.173 0.827 38 H 0.184 0.816 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.124 0.876 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -21.885 7.237 -14.462 27.212 hybrid contribution 1.085 -0.643 0.460 1.343 sum -20.800 6.594 -14.002 25.926 Atomic orbital electron populations 1.21795 0.94683 1.01125 1.01771 1.22240 0.96321 0.97857 1.01460 1.19039 0.93642 0.90084 0.82733 0.94283 1.21233 0.90174 1.39227 1.07201 0.92924 1.25597 0.95839 0.95693 0.99927 1.69983 1.10513 1.45799 1.30899 0.85998 0.79546 0.80027 0.77918 1.18390 1.22175 1.17428 1.45917 1.14508 1.53244 1.17852 1.19832 0.83481 0.80685 0.87827 1.90744 1.51322 1.59439 1.40016 1.20341 0.82447 0.79256 0.88343 1.90673 1.50997 1.57664 1.39873 1.42917 1.16597 1.54176 1.12649 1.18414 0.92898 1.02786 0.88520 1.22117 1.01291 0.94419 0.93568 1.22143 0.96879 1.01577 0.98052 1.21679 0.89623 0.94516 0.95934 1.20766 1.02758 1.01332 0.90465 1.67564 1.39376 1.14327 1.00897 1.19659 0.89047 0.97795 0.88967 1.59553 1.07654 1.10893 1.43452 1.22258 0.87036 1.00544 1.00838 1.22531 1.04081 0.83495 1.01759 0.93079 0.91899 0.93377 0.91432 0.93124 0.91963 0.75280 0.72770 0.82720 0.81621 0.89170 0.88547 0.90714 0.93738 0.89057 0.91588 0.91922 0.87633 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 8.51 71.98 0.61 -4.16 16 2 C -0.14 -5.73 5.11 30.59 0.16 -5.58 16 3 C 0.25 11.27 1.83 44.25 0.08 11.35 16 4 H 0.04 1.91 6.63 -2.39 -0.02 1.89 16 5 C -0.54 -29.08 9.31 25.60 0.24 -28.84 16 6 H 0.05 3.08 7.98 -2.91 -0.02 3.06 16 7 C 0.03 1.63 5.45 84.65 0.46 2.09 16 8 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 9 Si 0.94 42.98 24.41 68.60 1.67 44.66 16 10 H -0.26 -11.09 6.83 99.48 0.68 -10.41 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.25 -11.00 6.53 99.48 0.65 -10.35 16 13 N -0.67 -26.15 5.01 -447.57 -2.24 -28.39 16 14 C 0.50 17.87 6.45 87.23 0.56 18.43 16 15 O -0.54 -20.24 13.62 -3.28 -0.04 -20.28 16 16 C 0.51 16.02 7.78 87.23 0.68 16.69 16 17 O -0.52 -17.19 13.44 -3.38 -0.05 -17.24 16 18 N -0.62 -16.50 4.11 -304.07 -1.25 -17.75 16 19 C 0.07 1.89 6.30 38.40 0.24 2.13 16 20 C -0.09 -2.14 8.90 22.57 0.20 -1.94 16 21 C -0.17 -3.18 9.72 22.36 0.22 -2.96 16 22 C 0.12 2.29 6.78 42.49 0.29 2.58 16 23 C -0.10 -1.06 10.16 71.23 0.72 -0.34 16 24 N -0.51 -11.35 8.71 -180.76 -1.57 -12.92 16 25 C 0.28 6.64 6.06 133.21 0.81 7.45 16 26 N -0.50 -10.12 4.44 -751.09 -3.33 -13.45 16 27 C 0.04 0.66 8.87 127.69 1.13 1.79 16 28 C 0.03 0.50 9.26 127.69 1.18 1.68 16 29 H 0.05 1.74 5.65 -2.39 -0.01 1.73 16 30 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.05 1.75 7.85 -2.38 -0.02 1.73 16 32 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.05 2.15 3.21 -2.39 -0.01 2.14 16 34 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.41 15.65 8.01 -92.71 -0.74 14.91 16 36 H 0.43 10.97 7.50 -92.70 -0.69 10.27 16 37 H 0.16 4.22 5.62 -2.91 -0.02 4.20 16 38 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 39 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 0.68 8.08 -2.38 -0.02 0.66 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.04 0.76 7.69 -2.38 -0.02 0.74 16 43 H 0.09 1.10 8.09 -2.39 -0.02 1.08 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.30 6.75 -2.39 -0.02 1.28 16 46 H 0.11 1.42 8.07 -2.39 -0.02 1.40 16 47 H 0.04 0.66 8.13 -2.39 -0.02 0.64 16 Total: -1.00 -64.93 374.99 0.57 -64.37 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -0.50 Total: 35.90 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 7.58 Total: 20.37 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -8.10 Total: -127.78 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.09 Total: -37.52 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.67 Total: 44.66 kcal Total: -64.93 0.57 -64.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784195961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.089 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds