Wall clock time and date at job start Tue Mar 31 2020 17:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47447 * 2 1 4 4 C 1.53006 * 109.46989 * 240.00476 * 2 1 3 5 5 C 1.52999 * 109.47231 * 120.00408 * 2 1 3 6 6 H 1.08995 * 110.88445 * 294.76914 * 5 2 1 7 7 C 1.55150 * 111.00404 * 58.65260 * 5 2 1 8 8 C 1.54322 * 102.94406 * 153.61277 * 7 5 2 9 9 N 1.47023 * 107.27146 * 337.80888 * 8 7 5 10 10 C 1.34779 * 125.64841 * 178.90588 * 9 8 7 11 11 O 1.21365 * 119.99813 * 180.02562 * 10 9 8 12 12 C 1.49306 * 120.00092 * 359.74380 * 10 9 8 13 13 O 1.21405 * 119.99929 * 0.27549 * 12 10 9 14 14 N 1.34767 * 120.00182 * 180.28049 * 12 10 9 15 15 C 1.40291 * 120.00524 * 179.97438 * 14 12 10 16 16 C 1.40725 * 126.09826 * 0.02562 * 15 14 12 17 17 N 1.30870 * 108.38124 * 179.97438 * 16 15 14 18 18 N 1.40066 * 108.43260 * 359.97438 * 17 16 15 19 19 C 1.37298 * 126.05592 * 179.97438 * 18 17 16 20 20 H 1.07993 * 120.00088 * 179.97438 * 19 18 17 21 21 C 1.39009 * 119.99700 * 359.97438 * 19 18 17 22 22 N 1.31276 * 120.00208 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99821 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47339 * 60.00287 * 23 21 19 25 25 H 1.48497 * 109.47270 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47297 * 300.00143 * 23 21 19 27 27 C 1.35783 * 126.10491 * 179.70831 * 15 14 12 28 28 C 1.47419 * 108.70146 * 359.16498 * 9 8 7 29 29 H 1.09004 * 109.46620 * 300.00199 * 1 2 3 30 30 H 1.09004 * 109.47046 * 59.99483 * 1 2 3 31 31 H 1.08991 * 109.47306 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47348 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47420 * 300.00287 * 3 2 1 34 34 H 1.09005 * 109.46867 * 60.00137 * 3 2 1 35 35 H 1.09008 * 109.46829 * 293.51128 * 4 2 1 36 36 H 1.08997 * 109.47040 * 53.51331 * 4 2 1 37 37 H 1.08993 * 109.47166 * 173.51226 * 4 2 1 38 38 H 1.09006 * 110.72564 * 35.25166 * 7 5 2 39 39 H 1.09005 * 110.87430 * 272.04770 * 7 5 2 40 40 H 1.08999 * 109.88653 * 218.38385 * 8 7 5 41 41 H 1.08999 * 110.00910 * 97.29404 * 8 7 5 42 42 H 0.97004 * 119.99957 * 359.97438 * 14 12 10 43 43 H 1.08001 * 125.81079 * 0.02562 * 16 15 14 44 44 H 0.96999 * 120.00249 * 179.97438 * 22 21 19 45 45 H 1.08003 * 126.25392 * 359.97438 * 27 15 14 46 46 H 1.09000 * 110.36774 * 142.73952 * 28 9 8 47 47 H 1.09005 * 110.36825 * 265.06693 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0400 -0.7213 1.2492 6 1 1.7673 -0.1749 2.1520 7 6 1.5150 -2.1803 1.3022 8 6 2.5923 -2.9053 2.1359 9 7 3.8247 -2.1089 2.0439 10 6 4.9926 -2.3957 2.6525 11 8 5.9493 -1.6635 2.5056 12 6 5.1076 -3.6107 3.5126 13 8 4.1506 -4.3431 3.6597 14 7 6.2737 -3.8944 4.1257 15 6 6.3817 -5.0358 4.9343 16 6 5.3601 -5.9684 5.1928 17 7 5.8364 -6.8925 5.9877 18 7 7.1750 -6.5894 6.2671 19 6 8.0194 -7.3205 7.0655 20 1 9.0385 -6.9954 7.2141 21 6 7.5626 -8.4793 7.6827 22 7 6.3240 -8.8748 7.5018 23 14 8.7116 -9.4744 8.7685 24 1 9.1831 -8.6298 9.8952 25 1 7.9879 -10.6554 9.3037 26 1 9.8776 -9.9294 7.9692 27 6 7.4923 -5.4410 5.6022 28 6 3.5697 -0.9414 1.1808 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.7745 -1.7770 -1.1932 36 1 1.5849 -0.2787 -2.1355 37 1 3.1237 -0.6217 -1.3093 38 1 1.4528 -2.6046 0.3000 39 1 0.5463 -2.2267 1.7998 40 1 2.7646 -3.9030 1.7321 41 1 2.2738 -2.9766 3.1759 42 1 7.0385 -3.3094 4.0079 43 1 4.3543 -5.9288 4.8012 44 1 6.0053 -9.6836 7.9321 45 1 8.4513 -4.9444 5.6072 46 1 4.0966 -0.0662 1.5609 47 1 3.8746 -1.1534 0.1559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785147574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:04 Heat of formation + Delta-G solvation = 13.538170 kcal Electronic energy + Delta-G solvation = -28619.071788 eV Core-core repulsion = 24610.923775 eV Total energy + Delta-G solvation = -4008.148013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.79375 -39.84989 -38.98618 -37.71860 -36.03093 -34.27332 -33.17058 -31.02635 -30.31819 -29.29666 -28.02146 -27.69643 -27.39209 -25.63260 -24.52198 -22.41759 -22.06470 -20.98457 -19.67768 -19.38423 -18.73097 -17.65878 -17.34797 -16.75317 -16.25550 -15.51767 -15.39429 -15.20050 -14.76255 -14.45189 -14.40298 -14.19890 -13.91153 -13.80305 -13.61659 -13.15857 -13.04442 -12.89224 -12.81198 -12.45356 -12.37173 -11.97466 -11.93515 -11.72895 -11.60467 -11.48440 -11.39761 -11.26748 -11.20555 -10.88258 -10.76422 -10.65712 -10.59694 -10.57898 -10.26338 -9.22004 -9.03928 -8.86430 -8.74723 -8.12362 -6.76675 -6.59919 -4.27160 1.69281 2.50853 2.94711 3.03697 3.07421 3.33992 3.69559 3.72492 3.86234 4.16741 4.26931 4.34824 4.38648 4.58331 4.69544 4.78348 4.88801 4.98580 5.02290 5.05667 5.15119 5.23786 5.29899 5.34100 5.43943 5.47359 5.53672 5.63132 5.67659 5.74540 5.76157 5.84123 5.89715 5.91915 6.01735 6.11358 6.19268 6.22046 6.36975 6.77981 6.89163 6.95081 7.16924 7.25809 7.71554 7.83689 8.12856 8.19218 8.50826 8.70803 9.31811 9.60490 10.35854 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.037710 B = 0.002049 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.335004 B =13660.029527 C =14188.753472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.151 4.151 5 C -0.092 4.092 6 H 0.086 0.914 7 C -0.133 4.133 8 C 0.107 3.893 9 N -0.594 5.594 10 C 0.527 3.473 11 O -0.532 6.532 12 C 0.486 3.514 13 O -0.518 6.518 14 N -0.585 5.585 15 C -0.068 4.068 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.322 4.322 20 H 0.117 0.883 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.078 4.078 28 C 0.105 3.895 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.409 0.591 43 H 0.178 0.822 44 H 0.276 0.724 45 H 0.149 0.851 46 H 0.079 0.921 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.191 15.801 -13.747 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.057 4.057 3 C -0.202 4.202 4 C -0.208 4.208 5 C -0.111 4.111 6 H 0.104 0.896 7 C -0.171 4.171 8 C -0.015 4.015 9 N -0.328 5.328 10 C 0.311 3.689 11 O -0.409 6.409 12 C 0.267 3.733 13 O -0.395 6.395 14 N -0.227 5.227 15 C -0.174 4.174 16 C -0.203 4.203 17 N -0.091 5.091 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.229 4.229 28 C -0.017 4.017 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.244 0.756 43 H 0.194 0.806 44 H 0.087 0.913 45 H 0.166 0.834 46 H 0.097 0.903 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.700 14.365 -12.968 21.647 hybrid contribution 1.143 0.681 -0.022 1.330 sum -8.557 15.046 -12.990 21.641 Atomic orbital electron populations 1.21874 0.94090 1.02111 1.01754 1.20419 0.95834 0.95298 0.94183 1.21916 1.01282 0.95113 1.01847 1.22071 1.01294 1.00689 0.96708 1.22391 0.93879 0.96142 0.98674 0.89575 1.22905 0.98565 0.94566 1.01084 1.22200 0.82692 0.94973 1.01633 1.48188 1.11048 1.26061 1.47498 1.20019 0.81988 0.86353 0.80542 1.90728 1.36818 1.50753 1.62574 1.19544 0.84155 0.86512 0.83068 1.90637 1.37166 1.49589 1.62141 1.42133 1.12472 1.24238 1.43904 1.17247 0.96763 0.94425 1.08925 1.24135 0.99975 0.93937 1.02211 1.78255 0.90034 1.21451 1.19395 1.44552 1.07478 1.12720 1.25788 1.19872 0.94149 1.06023 1.25384 0.86500 1.25662 0.96650 0.97254 0.97567 1.70193 1.14146 1.20493 1.34603 0.85873 0.79542 0.78933 0.79694 1.19098 1.20102 1.19102 1.21303 0.98778 0.95624 1.07208 1.22469 0.95700 0.88639 0.94856 0.92584 0.92632 0.92233 0.92397 0.92541 0.92528 0.91974 0.92539 0.92163 0.90068 0.89814 0.90192 0.90075 0.75649 0.80572 0.91315 0.83373 0.90302 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.23 37.16 0.31 -0.47 16 2 C -0.06 -0.35 0.61 -154.51 -0.09 -0.45 16 3 C -0.14 -0.86 8.35 37.16 0.31 -0.55 16 4 C -0.15 -0.93 7.69 37.16 0.29 -0.64 16 5 C -0.09 -0.71 2.38 -88.59 -0.21 -0.92 16 6 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 7 C -0.13 -1.06 5.12 -24.90 -0.13 -1.19 16 8 C 0.11 1.25 5.49 -3.06 -0.02 1.23 16 9 N -0.59 -7.88 3.33 -171.22 -0.57 -8.45 16 10 C 0.53 8.64 7.91 -11.65 -0.09 8.54 16 11 O -0.53 -9.42 16.73 5.48 0.09 -9.33 16 12 C 0.49 9.09 7.82 -11.66 -0.09 9.00 16 13 O -0.52 -10.46 11.26 5.45 0.06 -10.39 16 14 N -0.58 -11.34 5.45 -10.46 -0.06 -11.39 16 15 C -0.07 -1.58 6.90 -83.93 -0.58 -2.16 16 16 C -0.03 -0.70 10.84 -17.02 -0.18 -0.88 16 17 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 18 N -0.14 -3.79 3.73 -11.40 -0.04 -3.83 16 19 C -0.32 -8.46 10.25 -14.82 -0.15 -8.61 16 20 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.22 11.81 55.50 0.66 -20.56 16 23 Si 0.94 18.75 29.55 -169.99 -5.02 13.73 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 27 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 28 C 0.11 1.07 5.54 -2.65 -0.01 1.06 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.32 7.24 -51.93 -0.38 -0.05 16 32 H 0.06 0.37 7.58 -51.93 -0.39 -0.03 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.39 5.99 -51.92 -0.31 0.08 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.40 6.36 -51.93 -0.33 0.07 16 38 H 0.08 0.58 5.90 -51.93 -0.31 0.28 16 39 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 40 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 41 H 0.08 1.04 7.56 -51.93 -0.39 0.65 16 42 H 0.41 6.91 8.29 -40.82 -0.34 6.57 16 43 H 0.18 4.42 5.92 -52.49 -0.31 4.11 16 44 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.15 2.96 8.06 -52.48 -0.42 2.53 16 46 H 0.08 0.85 8.00 -51.93 -0.42 0.43 16 47 H 0.08 0.75 5.61 -51.93 -0.29 0.45 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -32.20 375.01 -6.65 -38.85 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.79 Total: 9.87 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -0.94 Total: 3.03 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.31 Total: -51.40 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.15 Total: -19.72 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.20 -6.65 -38.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785147574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.387 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds