Wall clock time and date at job start Tue Mar 31 2020 17:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00545 * 2 1 4 4 C 1.53007 * 109.47062 * 124.99733 * 3 2 1 5 5 C 1.53003 * 109.46823 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46485 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46858 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47353 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47467 * 180.02562 * 8 7 6 10 10 C 1.34769 * 120.00323 * 180.02562 * 9 8 7 11 11 O 1.21365 * 119.99967 * 359.97438 * 10 9 8 12 12 C 1.49310 * 120.00069 * 179.97438 * 10 9 8 13 13 O 1.21401 * 120.00204 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99824 * 179.97438 * 12 10 9 15 15 C 1.40291 * 119.99920 * 179.97438 * 14 12 10 16 16 C 1.40728 * 126.10038 * 359.96768 * 15 14 12 17 17 N 1.30879 * 108.37511 * 179.78865 * 16 15 14 18 18 N 1.40063 * 108.43330 * 0.38015 * 17 16 15 19 19 C 1.37301 * 126.05067 * 179.87892 * 18 17 16 20 20 H 1.08002 * 119.99622 * 179.68466 * 19 18 17 21 21 C 1.39003 * 119.99972 * 359.96617 * 19 18 17 22 22 N 1.31284 * 120.00043 * 359.72316 * 21 19 18 23 23 Si 1.86801 * 119.99884 * 179.72361 * 21 19 18 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46780 * 119.99905 * 23 21 19 26 26 H 1.48493 * 109.47151 * 239.99809 * 23 21 19 27 27 C 1.35786 * 126.10045 * 180.02562 * 15 14 12 28 28 H 1.08003 * 119.99768 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00355 * 179.97438 * 1 2 3 30 30 H 1.08008 * 119.99300 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47047 * 5.00352 * 3 2 1 32 32 H 1.09001 * 109.47532 * 245.00180 * 3 2 1 33 33 H 1.09004 * 109.46684 * 60.00396 * 4 3 2 34 34 H 1.09001 * 109.47311 * 300.00582 * 4 3 2 35 35 H 1.09001 * 109.46745 * 60.00604 * 5 4 3 36 36 H 1.08998 * 109.47072 * 300.00362 * 5 4 3 37 37 H 1.09001 * 109.47464 * 60.00643 * 6 5 4 38 38 H 1.08998 * 109.47433 * 299.99740 * 6 5 4 39 39 H 1.09004 * 109.47056 * 60.00130 * 7 6 5 40 40 H 1.09001 * 109.47389 * 300.00040 * 7 6 5 41 41 H 1.08996 * 109.47079 * 59.99774 * 8 7 6 42 42 H 1.09009 * 109.46758 * 300.00065 * 8 7 6 43 43 H 0.97005 * 119.99816 * 0.02562 * 9 8 7 44 44 H 0.97005 * 120.00106 * 0.02562 * 14 12 10 45 45 H 1.07994 * 125.80747 * 359.97438 * 16 15 14 46 46 H 0.97004 * 119.99619 * 180.02562 * 22 21 19 47 47 H 1.08006 * 126.25013 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1817 5 6 3.7998 2.6581 1.1820 6 6 4.7717 2.6857 2.3634 7 6 5.5369 4.0106 2.3634 8 6 6.5084 4.0386 3.5450 9 7 7.2406 5.3075 3.5455 10 6 8.1575 5.5561 4.5013 11 8 8.3764 4.7290 5.3621 12 6 8.9042 6.8491 4.5013 13 8 8.6849 7.6767 3.6406 14 7 9.8208 7.0979 5.4576 15 6 10.5227 8.3126 5.4573 16 6 10.3736 9.3563 4.5251 17 7 11.1917 10.3234 4.8541 18 7 11.8992 9.9349 5.9988 19 6 12.8536 10.6770 6.6496 20 1 13.3363 10.2820 7.5312 21 6 13.1942 11.9391 6.1770 22 7 12.6072 12.4192 5.1053 23 14 14.4871 12.9520 7.0669 24 1 14.9925 12.1912 8.2377 25 1 15.6116 13.2423 6.1415 26 1 13.8844 14.2280 7.5291 27 6 11.4681 8.6906 6.3558 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4025 -0.9314 33 1 3.7400 0.5063 1.0921 34 1 2.4773 1.2354 2.1131 35 1 3.0946 3.4844 1.2719 36 1 4.3575 2.7560 0.2507 37 1 5.4769 1.8594 2.2731 38 1 4.2143 2.5876 3.2949 39 1 4.8320 4.8373 2.4534 40 1 6.0944 4.1083 1.4319 41 1 7.2132 3.2120 3.4556 42 1 5.9504 3.9411 4.4764 43 1 7.0654 5.9688 2.8577 44 1 9.9957 6.4368 6.1455 45 1 9.6968 9.3598 3.6835 46 1 12.8452 13.2999 4.7754 47 1 11.8158 8.1116 7.1987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807443052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:37 Heat of formation + Delta-G solvation = -14.872261 kcal Electronic energy + Delta-G solvation = -26296.555163 eV Core-core repulsion = 22287.175181 eV Total energy + Delta-G solvation = -4009.379982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.02031 -41.15867 -39.46555 -37.93379 -36.80064 -36.02510 -35.09356 -34.65666 -32.30489 -32.09911 -29.93735 -28.81381 -27.17252 -25.86559 -24.24678 -22.90306 -22.42779 -21.97769 -21.56881 -21.18354 -20.53206 -19.61604 -19.11545 -17.66522 -17.45334 -17.27476 -16.79352 -16.74271 -16.41693 -16.16185 -15.69279 -15.62190 -15.24165 -15.03016 -14.84917 -14.72398 -14.59147 -14.07753 -13.59562 -13.51946 -13.43218 -13.38201 -12.95392 -12.93947 -12.68142 -12.50478 -12.48463 -12.18300 -12.02352 -11.98946 -11.84382 -11.67418 -11.42468 -11.29539 -11.08312 -10.87745 -10.57851 -10.29810 -10.16394 -10.14342 -8.62600 -8.48933 -6.26728 0.28568 1.28684 1.31599 1.42412 1.43369 1.60550 1.72235 2.04218 2.12004 2.53355 2.59388 2.94603 3.07796 3.53463 3.70946 3.97970 4.01131 4.14103 4.27107 4.30813 4.39548 4.40449 4.52191 4.58160 4.61273 4.77896 4.82260 4.88681 4.95722 4.98297 4.99419 5.03423 5.09006 5.13292 5.20791 5.21812 5.23484 5.30637 5.37753 5.49763 5.55707 5.78705 5.90359 5.92085 6.01116 6.25091 6.48830 6.67429 6.80789 7.07162 7.41162 7.62598 8.50502 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.050783 B = 0.001320 C = 0.001292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.232872 B =21202.307559 C =21671.839865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.097 4.097 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.125 4.125 8 C 0.115 3.885 9 N -0.688 5.688 10 C 0.523 3.477 11 O -0.543 6.543 12 C 0.485 3.515 13 O -0.544 6.544 14 N -0.583 5.583 15 C -0.058 4.058 16 C -0.048 4.048 17 N -0.309 5.309 18 N -0.162 5.162 19 C -0.353 4.353 20 H 0.142 0.858 21 C -0.004 4.004 22 N -0.821 5.821 23 Si 1.019 2.981 24 H -0.241 1.241 25 H -0.272 1.272 26 H -0.272 1.272 27 C -0.075 4.075 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.420 0.580 44 H 0.423 0.577 45 H 0.176 0.824 46 H 0.278 0.722 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.062 -21.222 -5.897 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.180 4.180 3 C -0.134 4.134 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.163 4.163 8 C -0.007 4.007 9 N -0.341 5.341 10 C 0.303 3.697 11 O -0.421 6.421 12 C 0.267 3.733 13 O -0.422 6.422 14 N -0.227 5.227 15 C -0.164 4.164 16 C -0.223 4.223 17 N -0.141 5.141 18 N 0.070 4.930 19 C -0.484 4.484 20 H 0.159 0.841 21 C -0.216 4.216 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.164 1.164 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.226 4.226 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.257 0.743 44 H 0.261 0.739 45 H 0.193 0.807 46 H 0.088 0.912 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.675 -19.915 -6.341 26.737 hybrid contribution 0.086 -0.257 0.323 0.421 sum -16.590 -20.172 -6.018 26.801 Atomic orbital electron populations 1.24010 0.96187 1.02305 1.01600 1.23137 0.96268 0.99030 0.99565 1.20804 0.98291 0.95090 0.99190 1.21512 0.97712 0.97843 0.97939 1.21575 0.97946 0.97553 0.98418 1.21472 0.98117 0.96276 0.99233 1.21790 0.97722 0.99701 0.97108 1.21697 0.94547 0.83941 1.00543 1.45791 1.38037 1.21234 1.29070 1.19656 0.81144 0.86202 0.82726 1.90737 1.66101 1.47558 1.37674 1.20312 0.81895 0.88369 0.82710 1.90643 1.65897 1.47848 1.37793 1.42093 1.35782 1.16282 1.28582 1.17313 1.05442 0.90545 1.03140 1.24252 1.03117 0.92534 1.02404 1.78156 1.11068 1.22449 1.02380 1.44841 1.22789 1.09510 1.15896 1.20710 1.16141 0.99593 1.12005 0.84075 1.26868 1.00133 0.98183 0.96408 1.70384 1.37262 1.17161 1.20042 0.84532 0.75937 0.77321 0.78408 1.16414 1.19697 1.19731 1.22010 1.04469 0.91053 1.05063 0.88460 0.87978 0.87050 0.91650 0.90773 0.91661 0.92198 0.91816 0.91585 0.91273 0.91425 0.90500 0.90408 0.90913 0.90974 0.74308 0.73911 0.80705 0.91239 0.79481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 14.32 67.78 0.97 -1.01 16 2 C -0.16 -1.60 9.52 25.64 0.24 -1.36 16 3 C -0.10 -0.87 5.66 29.85 0.17 -0.71 16 4 C -0.11 -0.97 5.20 30.60 0.16 -0.81 16 5 C -0.12 -0.98 5.21 30.60 0.16 -0.82 16 6 C -0.11 -1.00 5.21 30.60 0.16 -0.84 16 7 C -0.13 -1.32 5.33 30.59 0.16 -1.16 16 8 C 0.11 1.82 5.67 86.38 0.49 2.31 16 9 N -0.69 -14.79 5.55 -464.56 -2.58 -17.37 16 10 C 0.52 15.08 7.88 87.23 0.69 15.76 16 11 O -0.54 -17.11 16.47 -3.29 -0.05 -17.17 16 12 C 0.49 17.21 7.85 87.23 0.69 17.89 16 13 O -0.54 -21.85 13.62 -3.41 -0.05 -21.90 16 14 N -0.58 -21.55 5.45 -305.33 -1.66 -23.21 16 15 C -0.06 -2.68 6.90 37.83 0.26 -2.42 16 16 C -0.05 -2.54 10.85 85.44 0.93 -1.61 16 17 N -0.31 -18.34 10.39 -56.43 -0.59 -18.93 16 18 N -0.16 -8.94 3.73 -189.97 -0.71 -9.65 16 19 C -0.35 -18.51 10.25 84.02 0.86 -17.65 16 20 H 0.14 6.42 7.83 -2.91 -0.02 6.40 16 21 C 0.00 -0.19 5.50 84.96 0.47 0.27 16 22 N -0.82 -46.61 11.81 21.66 0.26 -46.35 16 23 Si 1.02 38.01 29.55 68.60 2.03 40.04 16 24 H -0.24 -8.08 7.11 99.48 0.71 -7.38 16 25 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 27 C -0.08 -3.49 11.50 83.41 0.96 -2.53 16 28 H 0.10 0.88 7.84 -2.91 -0.02 0.86 16 29 H 0.10 0.82 8.06 -2.91 -0.02 0.79 16 30 H 0.11 0.97 8.06 -2.91 -0.02 0.94 16 31 H 0.06 0.60 7.79 -2.39 -0.02 0.58 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.42 8.23 7.94 -92.70 -0.74 7.49 16 44 H 0.42 13.18 8.29 -92.70 -0.77 12.41 16 45 H 0.18 9.12 5.92 -2.91 -0.02 9.11 16 46 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 47 H 0.19 6.95 8.06 -2.91 -0.02 6.93 16 Total: -1.00 -71.72 402.40 3.49 -68.23 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -0.52 Total: 40.97 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 7.36 Total: 5.33 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -5.28 Total: -115.50 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.10 Total: -39.07 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -71.72 3.49 -68.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807443052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.361 kcal (2) G-P(sol) polarization free energy of solvation -71.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds