Wall clock time and date at job start Tue Mar 31 2020 17:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47584 * 2 1 4 4 C 1.53005 * 109.47077 * 239.99818 * 2 1 3 5 5 C 1.50699 * 109.47055 * 60.00081 * 4 2 1 6 6 H 1.08003 * 119.99932 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00393 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99507 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00269 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47525 * 60.00197 * 9 7 5 11 11 H 1.48507 * 109.46953 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47180 * 299.99974 * 9 7 5 13 13 C 1.52996 * 109.47007 * 120.00236 * 2 1 3 14 14 N 1.46497 * 109.47260 * 299.99534 * 13 2 1 15 15 C 1.34779 * 120.00629 * 180.02562 * 14 13 2 16 16 O 1.21590 * 119.99552 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00164 * 180.02562 * 15 14 13 18 18 N 1.40099 * 120.00212 * 0.02562 * 17 15 14 19 19 C 1.34782 * 120.00143 * 180.02562 * 18 17 15 20 20 O 1.21284 * 119.99341 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00088 * 179.97438 * 19 18 17 22 22 C 1.50695 * 109.47115 * 179.97438 * 21 19 18 23 23 C 1.38678 * 120.41675 * 270.25421 * 22 21 19 24 24 C 1.38627 * 118.41930 * 180.24221 * 23 22 21 25 25 C 1.38232 * 119.16085 * 359.75178 * 24 23 22 26 26 N 1.31857 * 120.76541 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72235 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46940 * 300.00450 * 1 2 3 29 29 H 1.09006 * 109.47030 * 59.99855 * 1 2 3 30 30 H 1.08992 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46969 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46920 * 299.99889 * 3 2 1 33 33 H 1.08993 * 109.46898 * 60.00053 * 3 2 1 34 34 H 1.08998 * 109.46871 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47037 * 300.00499 * 4 2 1 36 36 H 0.96999 * 119.99814 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.47513 * 179.97438 * 13 2 1 38 38 H 1.09003 * 109.47540 * 59.99711 * 13 2 1 39 39 H 0.97008 * 119.99939 * 0.02562 * 14 13 2 40 40 H 0.97000 * 119.99935 * 179.97438 * 17 15 14 41 41 H 0.97000 * 119.99853 * 359.97438 * 18 17 15 42 42 H 1.09001 * 109.46626 * 59.99898 * 21 19 18 43 43 H 1.08996 * 109.46931 * 299.99770 * 21 19 18 44 44 H 1.07994 * 120.78944 * 359.96926 * 23 22 21 45 45 H 1.07997 * 120.42083 * 179.72800 * 24 23 22 46 46 H 1.07999 * 119.61954 * 180.02562 * 25 24 23 47 47 H 1.08002 * 119.61237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6281 -1.5504 -3.8526 9 14 1.2490 0.3993 -5.2572 10 1 1.7441 1.7994 -5.2567 11 1 1.7450 -0.3001 -6.4697 12 1 -0.2359 0.3994 -5.2577 13 6 2.0399 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5766 -1.4795 3.7811 17 7 1.4280 0.1443 4.7699 18 7 0.6213 1.2825 4.6414 19 6 0.1721 1.9179 5.7419 20 8 0.4659 1.5040 6.8434 21 6 -0.6951 3.1425 5.6036 22 6 -1.0595 3.6572 6.9723 23 6 -2.2024 3.2019 7.6123 24 6 -2.5007 3.7070 8.8683 25 6 -1.6523 4.6371 9.4392 26 7 -0.5709 5.0432 8.8036 27 6 -0.2559 4.5844 7.6078 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1300 -0.7217 -1.2490 35 1 1.6766 -1.7489 -1.2493 36 1 2.8624 -1.8818 -4.7336 37 1 3.1300 -0.7217 1.2490 38 1 1.6766 -1.7490 1.2492 39 1 0.9937 0.7579 2.3564 40 1 1.6623 -0.1871 5.6509 41 1 0.3867 1.6137 3.7604 42 1 -1.6035 2.8848 5.0590 43 1 -0.1509 3.9134 5.0582 44 1 -2.8470 2.4746 7.1415 45 1 -3.3850 3.3782 9.3940 46 1 -1.8774 5.0351 10.4176 47 1 0.6381 4.9410 7.1178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807593486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:25 Heat of formation + Delta-G solvation = -6.255678 kcal Electronic energy + Delta-G solvation = -27907.830799 eV Core-core repulsion = 23898.824460 eV Total energy + Delta-G solvation = -4009.006339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.02882 -40.38073 -39.35408 -37.33077 -35.93928 -34.10619 -33.64382 -32.39327 -32.13106 -31.23583 -28.17436 -27.18316 -26.63544 -26.24972 -23.99105 -23.27772 -23.08749 -21.40334 -21.04054 -19.55982 -18.26868 -17.85600 -17.48589 -16.94945 -16.48841 -16.19649 -15.93010 -15.79936 -15.25397 -15.15645 -14.68861 -14.48293 -14.24972 -13.96076 -13.88364 -13.71624 -13.46449 -13.20164 -12.90987 -12.86557 -12.38317 -12.12231 -12.06585 -11.59233 -11.24396 -11.08359 -10.94759 -10.77064 -10.71831 -10.50862 -10.40434 -10.34761 -10.16234 -9.98074 -9.85529 -9.41222 -9.30606 -9.06596 -9.01795 -8.50503 -8.41158 -6.05223 -4.07165 0.63066 0.88771 1.61736 2.03025 2.99350 3.10038 3.27595 3.33865 3.34228 3.39549 3.91487 4.07169 4.21887 4.29929 4.39916 4.52704 4.55982 4.74805 4.84051 4.89217 5.18631 5.29940 5.33342 5.34035 5.51747 5.60870 5.67928 5.77587 6.02079 6.02494 6.08500 6.14630 6.27836 6.28529 6.38398 6.49588 6.51458 6.63772 6.94366 6.97400 7.00674 7.03206 7.43704 7.57224 7.58100 7.68762 7.92488 8.02303 8.33100 8.43559 8.97193 9.56172 11.06016 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.001992 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.584042 B =14052.989684 C =15024.030741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.143 3.857 14 N -0.733 5.733 15 C 0.708 3.292 16 O -0.571 6.571 17 N -0.538 5.538 18 N -0.527 5.527 19 C 0.515 3.485 20 O -0.527 6.527 21 C -0.089 4.089 22 C -0.121 4.121 23 C -0.058 4.058 24 C -0.172 4.172 25 C 0.099 3.901 26 N -0.485 5.485 27 C 0.117 3.883 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.388 0.612 40 H 0.440 0.560 41 H 0.421 0.579 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.155 0.845 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.152 12.607 20.949 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.074 4.074 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.020 3.980 14 N -0.390 5.390 15 C 0.408 3.592 16 O -0.445 6.445 17 N -0.296 5.296 18 N -0.279 5.279 19 C 0.301 3.699 20 O -0.401 6.401 21 C -0.131 4.131 22 C -0.124 4.124 23 C -0.085 4.085 24 C -0.192 4.192 25 C -0.058 4.058 26 N -0.193 5.193 27 C -0.041 4.041 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.224 0.776 40 H 0.285 0.715 41 H 0.262 0.738 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.173 0.827 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.777 12.060 21.893 26.839 hybrid contribution -1.166 0.114 -1.488 1.894 sum -10.943 12.174 20.405 26.159 Atomic orbital electron populations 1.21766 0.95245 1.01324 1.00058 1.20940 0.95485 0.95917 0.95023 1.21767 1.00767 0.95803 1.00067 1.19085 0.96461 0.95264 0.89287 1.21115 1.31440 1.12143 0.90485 0.92312 1.25020 0.95280 0.95084 0.99116 1.69953 1.36663 1.22954 1.23632 0.86699 0.79101 0.79748 0.82658 1.20335 1.21398 1.20340 1.21621 0.99050 0.95840 0.81502 1.45423 1.55864 1.32968 1.04762 1.15828 0.80555 0.82660 0.80191 1.91039 1.42640 1.26676 1.84108 1.44693 1.52310 1.22627 1.09973 1.44929 1.49835 1.22911 1.10218 1.20752 0.80847 0.84816 0.83522 1.90786 1.57653 1.66363 1.25280 1.20507 1.00990 0.95375 0.96191 1.20193 0.96700 0.99085 0.96420 1.21469 0.95686 0.96843 0.94459 1.22135 1.01620 0.99063 0.96366 1.22812 0.89875 0.93734 0.99362 1.67716 1.17391 1.25518 1.08662 1.22642 0.97789 0.92910 0.90722 0.95600 0.91267 0.93187 0.93171 0.91268 0.95582 0.96225 0.96238 0.92924 0.91512 0.91530 0.77616 0.71467 0.73756 0.86804 0.86627 0.84802 0.84633 0.82727 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.05 37.16 0.30 -1.67 16 2 C -0.07 -1.26 0.54 -154.51 -0.08 -1.34 16 3 C -0.13 -1.98 8.05 37.16 0.30 -1.68 16 4 C 0.04 0.85 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -12.99 7.65 -34.44 -0.26 -13.25 16 6 H 0.06 1.41 5.68 -52.48 -0.30 1.11 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 9 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 13 C 0.14 2.32 4.56 -4.05 -0.02 2.30 16 14 N -0.73 -9.43 4.92 -65.23 -0.32 -9.75 16 15 C 0.71 10.14 8.68 -86.92 -0.75 9.39 16 16 O -0.57 -10.68 17.18 5.29 0.09 -10.59 16 17 N -0.54 -6.10 6.26 27.63 0.17 -5.92 16 18 N -0.53 -4.12 6.26 31.22 0.20 -3.92 16 19 C 0.51 4.19 7.94 -10.98 -0.09 4.10 16 20 O -0.53 -6.53 15.87 5.55 0.09 -6.44 16 21 C -0.09 -0.39 5.85 -29.04 -0.17 -0.56 16 22 C -0.12 -0.85 4.39 -104.48 -0.46 -1.31 16 23 C -0.06 -0.39 9.86 -39.28 -0.39 -0.78 16 24 C -0.17 -1.10 10.11 -39.44 -0.40 -1.50 16 25 C 0.10 0.75 11.18 -17.54 -0.20 0.55 16 26 N -0.48 -4.68 10.36 -13.25 -0.14 -4.82 16 27 C 0.12 0.97 10.86 -17.55 -0.19 0.78 16 28 H 0.02 0.30 6.86 -51.93 -0.36 -0.06 16 29 H 0.07 1.18 6.62 -51.93 -0.34 0.83 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.18 6.62 -51.93 -0.34 0.83 16 33 H 0.03 0.30 6.86 -51.93 -0.36 -0.05 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.39 3.84 4.08 -40.82 -0.17 3.67 16 40 H 0.44 5.23 8.10 -182.60 -1.48 3.76 16 41 H 0.42 2.17 6.70 -182.60 -1.22 0.95 16 42 H 0.11 0.22 8.10 -51.93 -0.42 -0.20 16 43 H 0.12 0.22 8.09 -51.93 -0.42 -0.20 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 46 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -35.05 389.33 -9.72 -44.77 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.77 Total: 3.05 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.62 Total: -2.82 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.65 Total: -49.31 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.18 Total: -17.03 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.05 -9.72 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807593486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.516 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds