Wall clock time and date at job start Tue Mar 31 2020 18:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46945 * 2 1 4 4 C 1.52993 * 109.46836 * 119.99896 * 2 1 3 5 5 H 1.08999 * 112.77983 * 302.88797 * 4 2 1 6 6 N 1.47074 * 113.46609 * 172.11275 * 4 2 1 7 7 C 1.34778 * 136.05446 * 38.13715 * 6 4 2 8 8 O 1.21364 * 120.00151 * 354.52104 * 7 6 4 9 9 C 1.49303 * 119.99745 * 174.80644 * 7 6 4 10 10 O 1.21408 * 120.00231 * 359.71592 * 9 7 6 11 11 N 1.34777 * 120.00018 * 179.72095 * 9 7 6 12 12 C 1.40298 * 120.00039 * 179.97438 * 11 9 7 13 13 C 1.40723 * 126.10011 * 0.02562 * 12 11 9 14 14 N 1.30872 * 108.37572 * 180.02562 * 13 12 11 15 15 N 1.40061 * 108.43614 * 359.97438 * 14 13 12 16 16 C 1.37296 * 126.05272 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99852 * 186.71761 * 16 15 14 18 18 C 1.39008 * 120.00392 * 6.70918 * 16 15 14 19 19 N 1.31283 * 119.99799 * 6.75724 * 18 16 15 20 20 Si 1.86797 * 120.00257 * 186.75258 * 18 16 15 21 21 H 1.48503 * 109.47176 * 84.99003 * 20 18 16 22 22 H 1.48503 * 109.47273 * 204.99003 * 20 18 16 23 23 H 1.48504 * 109.47341 * 324.99267 * 20 18 16 24 24 C 1.35788 * 126.10231 * 179.71640 * 12 11 9 25 25 C 1.47063 * 87.88358 * 217.87692 * 6 4 2 26 26 C 1.53492 * 87.98782 * 27.34164 * 25 6 4 27 27 C 1.52995 * 114.20929 * 87.51747 * 26 25 6 28 28 C 1.53000 * 114.20867 * 220.15086 * 26 25 6 29 29 H 1.09001 * 109.47042 * 303.93212 * 1 2 3 30 30 H 1.08998 * 109.47020 * 63.93020 * 1 2 3 31 31 H 1.09002 * 109.47159 * 183.92565 * 1 2 3 32 32 H 1.08996 * 109.46886 * 240.00100 * 2 1 3 33 33 H 1.09002 * 109.47091 * 208.43094 * 3 2 1 34 34 H 1.09008 * 109.47043 * 328.42589 * 3 2 1 35 35 H 1.08995 * 109.47597 * 88.42753 * 3 2 1 36 36 H 0.97000 * 120.00204 * 359.97438 * 11 9 7 37 37 H 1.08004 * 125.81248 * 0.02562 * 13 12 11 38 38 H 0.96997 * 120.00499 * 179.97438 * 19 18 16 39 39 H 1.08000 * 126.24445 * 359.97438 * 24 12 11 40 40 H 1.08999 * 113.46722 * 142.12456 * 25 6 4 41 41 H 1.09000 * 113.46760 * 272.55745 * 25 6 4 42 42 H 1.09000 * 109.46617 * 66.11354 * 27 26 25 43 43 H 1.08994 * 109.47525 * 186.11397 * 27 26 25 44 44 H 1.08997 * 109.47111 * 306.11611 * 27 26 25 45 45 H 1.09005 * 109.47224 * 40.49143 * 28 26 25 46 46 H 1.08993 * 109.47556 * 160.49397 * 28 26 25 47 47 H 1.09006 * 109.46620 * 280.49418 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6661 -0.2802 2.1733 6 7 3.4951 -0.9349 1.2491 7 6 4.5786 -0.2356 0.8574 8 8 4.4414 0.8200 0.2745 9 6 5.9476 -0.7627 1.1350 10 8 6.0849 -1.8187 1.7181 11 7 7.0311 -0.0661 0.7383 12 6 8.3176 -0.5611 0.9996 13 6 8.6244 -1.7641 1.6622 14 7 9.9264 -1.8846 1.7168 15 7 10.5010 -0.7695 1.0938 16 6 11.8447 -0.5288 0.9473 17 1 12.1836 0.4150 0.5466 18 6 12.7690 -1.4998 1.3150 19 7 12.3585 -2.6933 1.6765 20 14 14.5950 -1.1066 1.2945 21 1 14.9767 -0.4608 2.5762 22 1 15.3697 -2.3618 1.1228 23 1 14.8903 -0.1846 0.1685 24 6 9.4888 0.0322 0.6530 25 6 3.2478 -2.2447 1.8706 26 6 1.8730 -2.2484 1.1882 27 6 1.8769 -2.8284 -0.2276 28 6 0.7406 -2.7925 2.0615 29 1 -0.3633 0.5737 0.8527 30 1 -0.3633 0.4516 -0.9231 31 1 -0.3633 -1.0253 0.0704 32 1 1.8933 -0.5138 -0.8900 33 1 3.0132 1.4839 -0.4893 34 1 1.3356 2.0769 -0.5381 35 1 2.1345 1.7945 1.0272 36 1 6.9215 0.7775 0.2721 37 1 7.9074 -2.4680 2.0583 38 1 13.0034 -3.3710 1.9327 39 1 9.5989 0.9688 0.1268 40 1 3.9136 -3.0288 1.5101 41 1 3.1924 -2.2054 2.9585 42 1 2.1157 -3.8910 -0.1841 43 1 0.8932 -2.6952 -0.6776 44 1 2.6247 -2.3123 -0.8296 45 1 0.8624 -2.4297 3.0821 46 1 -0.2173 -2.4533 1.6673 47 1 0.7700 -3.8821 2.0572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815781488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:16 Heat of formation + Delta-G solvation = 56.240292 kcal Electronic energy + Delta-G solvation = -29213.670891 eV Core-core repulsion = 25207.374581 eV Total energy + Delta-G solvation = -4006.296310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.42023 -39.98679 -38.89238 -37.58738 -34.82541 -34.34555 -33.22136 -32.58225 -30.32324 -28.26222 -27.82995 -27.41600 -26.98414 -25.95326 -25.12640 -23.26105 -21.06349 -20.64130 -19.77673 -19.40102 -18.67211 -17.74286 -17.36649 -16.70024 -15.81937 -15.53460 -15.25888 -15.14356 -15.07272 -14.82027 -14.16438 -14.14997 -13.65774 -13.56621 -13.17346 -13.01358 -12.96264 -12.92895 -12.72711 -12.47496 -12.32002 -12.11072 -11.80786 -11.74299 -11.64470 -11.52954 -11.48436 -11.29149 -11.14869 -10.96294 -10.68420 -10.56516 -10.33377 -10.25093 -10.01365 -9.22599 -8.93484 -8.87635 -8.79363 -8.11813 -6.77378 -6.62115 -4.27420 1.70060 2.39317 2.93788 3.03806 3.08254 3.34869 3.62404 3.72579 3.82954 3.93061 4.36788 4.46294 4.52927 4.61157 4.74041 4.83375 4.87937 4.96129 5.00790 5.05530 5.22007 5.35459 5.43210 5.44969 5.50601 5.57514 5.63387 5.70368 5.72085 5.75630 5.77277 5.80462 6.00305 6.05542 6.08797 6.20335 6.31123 6.36557 6.58242 6.78821 6.89342 6.96997 7.16724 7.51234 7.76089 7.87280 8.17826 8.19148 8.52029 8.70816 9.31581 9.59629 10.35061 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.002362 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.847234 B =11853.966336 C =12566.188762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 C -0.161 4.161 4 C 0.147 3.853 5 H 0.094 0.906 6 N -0.615 5.615 7 C 0.542 3.458 8 O -0.520 6.520 9 C 0.487 3.513 10 O -0.519 6.519 11 N -0.586 5.586 12 C -0.068 4.068 13 C -0.025 4.025 14 N -0.264 5.264 15 N -0.138 5.138 16 C -0.324 4.324 17 H 0.118 0.882 18 C 0.048 3.952 19 N -0.770 5.770 20 Si 0.936 3.064 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.076 4.076 25 C 0.114 3.886 26 C -0.103 4.103 27 C -0.124 4.124 28 C -0.133 4.133 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.040 0.960 35 H 0.044 0.956 36 H 0.408 0.592 37 H 0.177 0.823 38 H 0.276 0.724 39 H 0.149 0.851 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.639 2.111 -1.822 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.218 4.218 4 C 0.045 3.955 5 H 0.112 0.888 6 N -0.350 5.350 7 C 0.327 3.673 8 O -0.397 6.397 9 C 0.267 3.733 10 O -0.396 6.396 11 N -0.229 5.229 12 C -0.174 4.174 13 C -0.201 4.201 14 N -0.094 5.094 15 N 0.095 4.905 16 C -0.456 4.456 17 H 0.135 0.865 18 C -0.169 4.169 19 N -0.396 5.396 20 Si 0.759 3.241 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.228 4.228 25 C -0.008 4.008 26 C -0.104 4.104 27 C -0.181 4.181 28 C -0.191 4.191 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.243 0.757 37 H 0.194 0.806 38 H 0.087 0.913 39 H 0.166 0.834 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.316 1.097 -1.320 20.389 hybrid contribution 0.090 1.252 -0.392 1.315 sum -20.227 2.349 -1.712 20.435 Atomic orbital electron populations 1.21824 0.94654 1.01696 1.01851 1.21328 0.95648 0.97576 0.97364 1.22354 1.03467 0.93874 1.02056 1.23062 0.78563 0.94968 0.98927 0.88838 1.49278 1.05542 1.20599 1.59580 1.19853 0.84582 0.83640 0.79196 1.90579 1.85546 1.22515 1.41058 1.19647 0.84918 0.85813 0.82874 1.90633 1.85800 1.22117 1.41095 1.42145 1.03349 1.23389 1.53990 1.17247 0.82170 1.00404 1.17537 1.24106 0.94101 0.97340 1.04552 1.78185 1.05640 1.06065 1.19545 1.44528 1.04533 1.11500 1.29923 1.19885 0.77144 1.03349 1.45244 0.86482 1.25649 1.01456 0.94436 0.95380 1.70168 1.35734 1.02071 1.31623 0.85830 0.80189 0.78601 0.79452 1.19435 1.20105 1.18804 1.21320 0.87065 1.01317 1.13062 1.23201 0.94268 0.85152 0.98229 1.22375 0.95717 0.94890 0.97374 1.21529 1.02199 1.00781 0.93612 1.21656 0.97077 1.01464 0.98862 0.92723 0.92484 0.92464 0.90451 0.88130 0.94052 0.93661 0.75669 0.80612 0.91300 0.83366 0.88946 0.89435 0.91799 0.91876 0.92039 0.92082 0.91872 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.98 37.16 0.33 -0.69 16 2 C -0.10 -0.97 2.28 -90.62 -0.21 -1.18 16 3 C -0.16 -1.85 8.16 37.16 0.30 -1.55 16 4 C 0.15 1.45 2.73 -72.26 -0.20 1.25 16 5 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 6 N -0.62 -7.95 3.34 -177.77 -0.59 -8.55 16 7 C 0.54 8.58 8.06 -11.65 -0.09 8.49 16 8 O -0.52 -8.48 12.48 5.48 0.07 -8.41 16 9 C 0.49 9.07 7.85 -11.65 -0.09 8.98 16 10 O -0.52 -10.68 12.47 5.45 0.07 -10.61 16 11 N -0.59 -11.28 5.45 -10.45 -0.06 -11.33 16 12 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 13 C -0.03 -0.66 10.84 -17.02 -0.18 -0.84 16 14 N -0.26 -7.60 10.47 30.81 0.32 -7.28 16 15 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 16 C -0.32 -8.53 10.23 -14.82 -0.15 -8.68 16 17 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 18 C 0.05 1.24 5.48 -17.50 -0.10 1.15 16 19 N -0.77 -21.31 11.91 55.50 0.66 -20.65 16 20 Si 0.94 18.81 29.56 -169.99 -5.02 13.78 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 24 C -0.08 -1.81 11.50 -16.38 -0.19 -2.00 16 25 C 0.11 1.24 6.68 -8.51 -0.06 1.19 16 26 C -0.10 -0.84 1.05 -153.86 -0.16 -1.00 16 27 C -0.12 -1.01 7.93 37.16 0.29 -0.72 16 28 C -0.13 -0.78 9.25 37.16 0.34 -0.44 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.35 6.18 -51.93 -0.32 0.03 16 32 H 0.08 0.83 6.23 -51.93 -0.32 0.50 16 33 H 0.10 1.42 4.94 -52.69 -0.26 1.16 16 34 H 0.04 0.42 7.86 -51.92 -0.41 0.01 16 35 H 0.04 0.55 7.86 -51.93 -0.41 0.14 16 36 H 0.41 6.80 8.29 -40.82 -0.34 6.46 16 37 H 0.18 4.46 5.92 -52.48 -0.31 4.15 16 38 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.15 2.96 8.06 -52.49 -0.42 2.54 16 40 H 0.09 1.14 7.57 -51.93 -0.39 0.74 16 41 H 0.09 0.87 8.03 -51.93 -0.42 0.45 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.43 7.46 -51.93 -0.39 0.04 16 44 H 0.06 0.62 6.92 -51.93 -0.36 0.26 16 45 H 0.06 0.34 8.03 -51.93 -0.42 -0.08 16 46 H 0.06 0.32 7.19 -51.93 -0.37 -0.06 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -31.96 376.00 -6.46 -38.42 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.80 Total: 10.99 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.73 Total: 1.79 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.29 Total: -51.63 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.14 Total: -19.02 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.96 -6.46 -38.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815781488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.659 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds