Wall clock time and date at job start Tue Mar 31 2020 18:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46654 * 2 1 4 4 C 1.53000 * 109.46647 * 119.99479 * 2 1 3 5 5 C 1.52996 * 109.47271 * 300.00238 * 4 2 1 6 6 N 1.46507 * 109.47159 * 180.02562 * 5 4 2 7 7 C 1.34769 * 120.00057 * 180.02562 * 6 5 4 8 8 O 1.21363 * 120.00278 * 359.97438 * 7 6 5 9 9 C 1.49315 * 119.99908 * 180.02562 * 7 6 5 10 10 O 1.21403 * 119.99839 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99715 * 180.27494 * 9 7 6 12 12 C 1.40290 * 119.99707 * 179.72627 * 11 9 7 13 13 C 1.40724 * 126.10136 * 359.68012 * 12 11 9 14 14 N 1.30879 * 108.37752 * 179.82042 * 13 12 11 15 15 N 1.40060 * 108.43476 * 0.44399 * 14 13 12 16 16 C 1.37298 * 126.05775 * 179.71586 * 15 14 13 17 17 H 1.07999 * 120.00047 * 180.02562 * 16 15 14 18 18 C 1.39005 * 119.99629 * 0.02562 * 16 15 14 19 19 N 1.31277 * 120.00165 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99668 * 180.02562 * 18 16 15 21 21 H 1.48487 * 109.47242 * 60.00156 * 20 18 16 22 22 H 1.48508 * 109.46952 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46855 * 299.99841 * 20 18 16 24 24 C 1.35790 * 126.09984 * 179.97438 * 12 11 9 25 25 C 1.52996 * 109.47480 * 239.99589 * 2 1 3 26 26 C 1.53004 * 117.49672 * 128.74408 * 25 2 1 27 27 C 1.52997 * 117.49765 * 60.08514 * 25 2 1 28 28 H 1.08990 * 109.47686 * 300.00185 * 1 2 3 29 29 H 1.09005 * 109.47113 * 60.00634 * 1 2 3 30 30 H 1.09006 * 109.47180 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46549 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47207 * 299.99091 * 3 2 1 33 33 H 1.08998 * 109.47053 * 59.99839 * 3 2 1 34 34 H 1.09000 * 109.46793 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.47049 * 60.00634 * 4 2 1 36 36 H 1.08994 * 109.47190 * 60.00487 * 5 4 2 37 37 H 1.08998 * 109.47408 * 300.00176 * 5 4 2 38 38 H 0.97000 * 119.99595 * 0.02562 * 6 5 4 39 39 H 0.97001 * 120.00485 * 359.71506 * 11 9 7 40 40 H 1.08003 * 125.81096 * 359.97438 * 13 12 11 41 41 H 0.97001 * 120.00185 * 179.97438 * 19 18 16 42 42 H 1.07995 * 126.25130 * 359.97332 * 24 12 11 43 43 H 1.08998 * 115.55159 * 274.42134 * 25 2 1 44 44 H 1.08992 * 117.49805 * 0.02562 * 26 25 2 45 45 H 1.08997 * 117.49175 * 145.01931 * 26 25 2 46 46 H 1.08994 * 117.50409 * 214.97840 * 27 25 2 47 47 H 1.09007 * 117.50094 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5298 0.0001 2.4985 6 7 2.0186 -0.6901 3.6948 7 6 1.6926 -0.2298 4.9188 8 8 0.9945 0.7567 5.0301 9 6 2.1912 -0.9329 6.1380 10 8 2.8899 -1.9195 6.0266 11 7 1.8606 -0.4759 7.3620 12 6 2.3244 -1.1399 8.5075 13 6 3.1323 -2.2919 8.5281 14 7 3.3605 -2.6135 9.7761 15 7 2.7025 -1.6906 10.5988 16 6 2.6961 -1.6926 11.9718 17 1 2.1529 -0.9303 12.5104 18 6 3.3890 -2.6759 12.6685 19 7 4.0497 -3.6022 12.0137 20 14 3.3798 -2.6790 14.5365 21 1 1.9835 -2.8101 15.0244 22 1 4.1877 -3.8217 15.0335 23 1 3.9617 -1.4075 15.0365 24 6 2.0691 -0.7888 9.7942 25 6 2.0401 -0.7213 -1.2491 26 6 3.0764 0.0040 -2.1100 27 6 1.6375 -0.1485 -2.6095 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6765 1.9563 0.8900 34 1 3.1299 -0.7216 1.2491 35 1 1.6766 -1.7488 1.2493 36 1 0.4399 0.0001 2.4984 37 1 1.8931 1.0278 2.4985 38 1 2.5768 -1.4783 3.6058 39 1 1.3022 0.3123 7.4510 40 1 3.5031 -2.8192 7.6616 41 1 4.5335 -4.2881 12.4999 42 1 1.4737 0.0508 10.1209 43 1 2.1254 -1.8046 -1.1646 44 1 3.3951 0.9947 -1.7862 45 1 3.8433 -0.6024 -2.5919 46 1 1.4584 -0.8549 -3.4200 47 1 1.0096 0.7425 -2.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815877108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:15 Heat of formation + Delta-G solvation = 29.880625 kcal Electronic energy + Delta-G solvation = -27586.598086 eV Core-core repulsion = 23579.158735 eV Total energy + Delta-G solvation = -4007.439351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.52809 -39.79065 -39.32857 -37.90956 -35.92929 -34.47471 -33.60119 -33.10405 -30.32783 -29.20746 -28.00743 -27.80420 -25.88268 -25.01698 -23.62164 -22.59366 -21.79642 -21.03182 -20.35772 -19.47412 -18.69188 -18.02326 -17.43645 -16.92252 -16.03169 -16.00202 -15.55037 -15.37104 -15.09104 -14.98755 -14.78621 -14.14074 -14.04214 -13.84155 -13.50916 -13.39742 -13.00029 -12.97459 -12.89430 -12.40485 -12.27774 -11.94029 -11.73603 -11.58315 -11.47634 -11.41960 -11.28948 -11.26895 -11.22378 -10.89163 -10.84570 -10.58110 -10.51652 -10.28534 -10.24486 -9.25232 -9.21904 -9.12168 -8.87516 -8.12915 -6.77858 -6.60297 -4.27791 1.66799 2.60653 2.94555 3.03693 3.07403 3.33592 3.42097 3.72092 3.75827 3.96456 4.13109 4.37258 4.38488 4.48361 4.60727 4.64304 4.70897 4.77253 4.91897 4.98210 5.01077 5.03270 5.15138 5.24376 5.30474 5.34580 5.46212 5.57548 5.59050 5.63755 5.67407 5.72964 5.76468 5.89019 6.01108 6.04167 6.19893 6.21513 6.36114 6.75790 6.88588 6.92159 7.16312 7.22917 7.76575 7.86324 8.10839 8.18541 8.49023 8.69665 9.31190 9.59872 10.35442 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.042648 B = 0.001682 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.383220 B =16638.892875 C =17028.778138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.028 4.028 3 C -0.152 4.152 4 C -0.121 4.121 5 C 0.114 3.886 6 N -0.705 5.705 7 C 0.514 3.486 8 O -0.530 6.530 9 C 0.483 3.517 10 O -0.524 6.524 11 N -0.583 5.583 12 C -0.070 4.070 13 C -0.027 4.027 14 N -0.261 5.261 15 N -0.138 5.138 16 C -0.323 4.323 17 H 0.118 0.882 18 C 0.047 3.953 19 N -0.768 5.768 20 Si 0.936 3.064 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.266 1.266 24 C -0.077 4.077 25 C -0.142 4.142 26 C -0.185 4.185 27 C -0.179 4.179 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.413 0.587 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.276 0.724 42 H 0.149 0.851 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.698 7.212 -23.319 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 C -0.209 4.209 4 C -0.159 4.159 5 C -0.009 4.009 6 N -0.359 5.359 7 C 0.296 3.704 8 O -0.406 6.406 9 C 0.264 3.736 10 O -0.401 6.401 11 N -0.226 5.226 12 C -0.176 4.176 13 C -0.202 4.202 14 N -0.091 5.091 15 N 0.095 4.905 16 C -0.455 4.455 17 H 0.135 0.865 18 C -0.171 4.171 19 N -0.394 5.394 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.229 4.229 25 C -0.160 4.160 26 C -0.222 4.222 27 C -0.216 4.216 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.249 0.751 39 H 0.244 0.756 40 H 0.194 0.806 41 H 0.087 0.913 42 H 0.167 0.833 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.979 6.195 -22.493 23.667 hybrid contribution -0.471 0.636 0.159 0.808 sum -4.449 6.831 -22.334 23.775 Atomic orbital electron populations 1.21951 0.94036 1.02217 1.02052 1.19957 0.95617 0.94879 0.92394 1.22112 1.01376 0.95257 1.02125 1.21832 1.01698 0.99784 0.92545 1.21628 0.99833 0.96679 0.82782 1.45736 1.52941 1.32371 1.04818 1.20282 0.80803 0.84437 0.84917 1.90728 1.37114 1.25739 1.86995 1.19667 0.83842 0.85979 0.84116 1.90652 1.37744 1.25766 1.85947 1.42148 1.48073 1.29063 1.03318 1.17260 1.13814 1.02115 0.84374 1.24146 1.02407 0.97139 0.96538 1.78261 1.19257 1.13140 0.98485 1.44556 1.26351 1.14409 1.05156 1.19884 1.34016 1.14821 0.76772 0.86472 1.25662 0.95109 0.94855 1.01472 1.70194 1.22388 1.10172 1.36649 0.85871 0.79123 0.78700 0.80339 1.19091 1.20088 1.19096 1.21306 1.10661 1.01787 0.89143 1.22324 1.03681 0.98975 0.91029 1.23162 0.92447 1.02621 1.03957 1.22938 0.98214 1.03262 0.97174 0.92022 0.92481 0.92365 0.92019 0.92471 0.91936 0.90716 0.90798 0.90786 0.90824 0.75055 0.75593 0.80561 0.91296 0.83345 0.87808 0.88089 0.89139 0.89072 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 7.96 37.16 0.30 -0.61 16 2 C -0.03 -0.17 0.65 -154.51 -0.10 -0.27 16 3 C -0.15 -0.93 6.72 37.16 0.25 -0.68 16 4 C -0.12 -0.83 4.37 -26.73 -0.12 -0.95 16 5 C 0.11 1.05 4.97 -4.04 -0.02 1.03 16 6 N -0.70 -8.26 5.55 -60.78 -0.34 -8.60 16 7 C 0.51 7.82 7.88 -11.65 -0.09 7.73 16 8 O -0.53 -8.80 16.47 5.49 0.09 -8.71 16 9 C 0.48 8.78 7.85 -11.65 -0.09 8.69 16 10 O -0.52 -10.59 13.62 5.45 0.07 -10.51 16 11 N -0.58 -11.09 5.45 -10.45 -0.06 -11.15 16 12 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 13 C -0.03 -0.69 10.85 -17.02 -0.18 -0.88 16 14 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 15 N -0.14 -3.76 3.73 -11.40 -0.04 -3.80 16 16 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 17 H 0.12 2.73 7.83 -52.49 -0.41 2.31 16 18 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 19 N -0.77 -21.18 11.81 55.50 0.66 -20.52 16 20 Si 0.94 18.68 29.55 -169.99 -5.02 13.66 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 24 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 25 C -0.14 -0.86 5.15 -90.62 -0.47 -1.32 16 26 C -0.19 -1.07 9.57 -26.69 -0.26 -1.33 16 27 C -0.18 -1.00 9.38 -26.69 -0.25 -1.25 16 28 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 29 H 0.06 0.33 7.29 -51.93 -0.38 -0.05 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 6.97 -51.93 -0.36 0.01 16 32 H 0.06 0.32 7.07 -51.93 -0.37 -0.04 16 33 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.71 6.43 -51.93 -0.33 0.37 16 37 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 38 H 0.41 4.46 7.94 -40.82 -0.32 4.14 16 39 H 0.41 6.72 8.29 -40.82 -0.34 6.38 16 40 H 0.18 4.44 5.92 -52.48 -0.31 4.13 16 41 H 0.28 6.97 8.31 -40.82 -0.34 6.64 16 42 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 43 H 0.10 0.63 8.11 -51.93 -0.42 0.21 16 44 H 0.10 0.57 5.85 -51.93 -0.30 0.26 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.09 0.51 7.07 -51.93 -0.37 0.14 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -32.24 382.53 -7.19 -39.43 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -6.59 Total: 13.19 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -2.05 Total: -1.58 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.54 Total: -51.24 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.16 Total: -19.22 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.24 -7.19 -39.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815877108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.310 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds