Wall clock time and date at job start Tue Mar 31 2020 18:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46654 * 2 1 4 4 C 1.53000 * 109.46647 * 119.99479 * 2 1 3 5 5 C 1.52996 * 109.47271 * 300.00238 * 4 2 1 6 6 N 1.46507 * 109.47159 * 180.02562 * 5 4 2 7 7 C 1.34769 * 120.00057 * 180.02562 * 6 5 4 8 8 O 1.21363 * 120.00278 * 359.97438 * 7 6 5 9 9 C 1.49315 * 119.99908 * 180.02562 * 7 6 5 10 10 O 1.21403 * 119.99839 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99715 * 180.27494 * 9 7 6 12 12 C 1.40290 * 119.99707 * 179.72627 * 11 9 7 13 13 C 1.40724 * 126.10136 * 359.68012 * 12 11 9 14 14 N 1.30879 * 108.37752 * 179.82042 * 13 12 11 15 15 N 1.40060 * 108.43476 * 0.44399 * 14 13 12 16 16 C 1.37298 * 126.05775 * 179.71586 * 15 14 13 17 17 H 1.07999 * 120.00047 * 180.02562 * 16 15 14 18 18 C 1.39005 * 119.99629 * 0.02562 * 16 15 14 19 19 N 1.31277 * 120.00165 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99668 * 180.02562 * 18 16 15 21 21 H 1.48487 * 109.47242 * 60.00156 * 20 18 16 22 22 H 1.48508 * 109.46952 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46855 * 299.99841 * 20 18 16 24 24 C 1.35790 * 126.09984 * 179.97438 * 12 11 9 25 25 C 1.52996 * 109.47480 * 239.99589 * 2 1 3 26 26 C 1.53004 * 117.49672 * 128.74408 * 25 2 1 27 27 C 1.52997 * 117.49765 * 60.08514 * 25 2 1 28 28 H 1.08990 * 109.47686 * 300.00185 * 1 2 3 29 29 H 1.09005 * 109.47113 * 60.00634 * 1 2 3 30 30 H 1.09006 * 109.47180 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46549 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47207 * 299.99091 * 3 2 1 33 33 H 1.08998 * 109.47053 * 59.99839 * 3 2 1 34 34 H 1.09000 * 109.46793 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.47049 * 60.00634 * 4 2 1 36 36 H 1.08994 * 109.47190 * 60.00487 * 5 4 2 37 37 H 1.08998 * 109.47408 * 300.00176 * 5 4 2 38 38 H 0.97000 * 119.99595 * 0.02562 * 6 5 4 39 39 H 0.97001 * 120.00485 * 359.71506 * 11 9 7 40 40 H 1.08003 * 125.81096 * 359.97438 * 13 12 11 41 41 H 0.97001 * 120.00185 * 179.97438 * 19 18 16 42 42 H 1.07995 * 126.25130 * 359.97332 * 24 12 11 43 43 H 1.08998 * 115.55159 * 274.42134 * 25 2 1 44 44 H 1.08992 * 117.49805 * 0.02562 * 26 25 2 45 45 H 1.08997 * 117.49175 * 145.01931 * 26 25 2 46 46 H 1.08994 * 117.50409 * 214.97840 * 27 25 2 47 47 H 1.09007 * 117.50094 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5298 0.0001 2.4985 6 7 2.0186 -0.6901 3.6948 7 6 1.6926 -0.2298 4.9188 8 8 0.9945 0.7567 5.0301 9 6 2.1912 -0.9329 6.1380 10 8 2.8899 -1.9195 6.0266 11 7 1.8606 -0.4759 7.3620 12 6 2.3244 -1.1399 8.5075 13 6 3.1323 -2.2919 8.5281 14 7 3.3605 -2.6135 9.7761 15 7 2.7025 -1.6906 10.5988 16 6 2.6961 -1.6926 11.9718 17 1 2.1529 -0.9303 12.5104 18 6 3.3890 -2.6759 12.6685 19 7 4.0497 -3.6022 12.0137 20 14 3.3798 -2.6790 14.5365 21 1 1.9835 -2.8101 15.0244 22 1 4.1877 -3.8217 15.0335 23 1 3.9617 -1.4075 15.0365 24 6 2.0691 -0.7888 9.7942 25 6 2.0401 -0.7213 -1.2491 26 6 3.0764 0.0040 -2.1100 27 6 1.6375 -0.1485 -2.6095 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6765 1.9563 0.8900 34 1 3.1299 -0.7216 1.2491 35 1 1.6766 -1.7488 1.2493 36 1 0.4399 0.0001 2.4984 37 1 1.8931 1.0278 2.4985 38 1 2.5768 -1.4783 3.6058 39 1 1.3022 0.3123 7.4510 40 1 3.5031 -2.8192 7.6616 41 1 4.5335 -4.2881 12.4999 42 1 1.4737 0.0508 10.1209 43 1 2.1254 -1.8046 -1.1646 44 1 3.3951 0.9947 -1.7862 45 1 3.8433 -0.6024 -2.5919 46 1 1.4584 -0.8549 -3.4200 47 1 1.0096 0.7425 -2.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815877108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:14 Heat of formation + Delta-G solvation = 8.596295 kcal Electronic energy + Delta-G solvation = -27587.521044 eV Core-core repulsion = 23579.158735 eV Total energy + Delta-G solvation = -4008.362309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.02442 -41.19715 -40.20427 -39.33970 -36.85640 -35.99812 -35.04045 -34.33625 -32.29587 -30.15846 -29.66211 -28.29125 -27.26501 -26.27170 -24.84974 -23.03006 -22.93518 -22.45318 -21.77931 -21.23262 -19.73545 -19.23657 -18.88414 -17.86113 -17.44298 -17.13049 -17.03790 -16.73940 -16.17968 -16.07243 -15.75171 -15.49060 -15.31819 -14.94431 -14.85099 -14.74232 -14.46325 -13.99027 -13.50805 -13.44578 -13.37912 -13.02314 -12.96537 -12.88381 -12.80876 -12.52362 -12.43087 -12.12857 -12.05727 -11.96086 -11.88986 -11.79606 -11.37044 -11.05327 -11.01917 -10.87210 -10.73353 -10.54441 -10.24835 -10.13930 -8.62322 -8.48541 -6.26587 0.29146 1.31003 1.31472 1.42725 1.57610 1.73342 2.04682 2.12792 2.53758 2.58907 2.92455 2.99588 3.07890 3.53469 3.58351 3.86579 3.97768 4.13274 4.16199 4.27089 4.35675 4.39826 4.44719 4.52398 4.57218 4.68674 4.82035 4.87380 4.93501 4.95820 4.98221 5.02365 5.03394 5.11177 5.16856 5.19016 5.21678 5.25832 5.30834 5.33607 5.40539 5.50914 5.54351 5.90250 6.01272 6.25314 6.49158 6.67586 6.81130 7.07565 7.41227 7.62858 8.50456 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.042648 B = 0.001682 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.383220 B =16638.892875 C =17028.778138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.023 4.023 3 C -0.151 4.151 4 C -0.114 4.114 5 C 0.113 3.887 6 N -0.688 5.688 7 C 0.523 3.477 8 O -0.542 6.542 9 C 0.485 3.515 10 O -0.544 6.544 11 N -0.583 5.583 12 C -0.058 4.058 13 C -0.048 4.048 14 N -0.308 5.308 15 N -0.163 5.163 16 C -0.355 4.355 17 H 0.142 0.858 18 C -0.004 4.004 19 N -0.821 5.821 20 Si 1.020 2.980 21 H -0.254 1.254 22 H -0.277 1.277 23 H -0.254 1.254 24 C -0.075 4.075 25 C -0.147 4.147 26 C -0.188 4.188 27 C -0.177 4.177 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.419 0.581 39 H 0.423 0.577 40 H 0.176 0.824 41 H 0.278 0.722 42 H 0.188 0.812 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 8.570 -23.889 26.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 C -0.208 4.208 4 C -0.152 4.152 5 C -0.009 4.009 6 N -0.340 5.340 7 C 0.303 3.697 8 O -0.420 6.420 9 C 0.267 3.733 10 O -0.422 6.422 11 N -0.227 5.227 12 C -0.164 4.164 13 C -0.223 4.223 14 N -0.140 5.140 15 N 0.069 4.931 16 C -0.486 4.486 17 H 0.159 0.841 18 C -0.217 4.217 19 N -0.448 5.448 20 Si 0.838 3.162 21 H -0.178 1.178 22 H -0.202 1.202 23 H -0.178 1.178 24 C -0.226 4.226 25 C -0.165 4.165 26 C -0.224 4.224 27 C -0.214 4.214 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.256 0.744 39 H 0.261 0.739 40 H 0.193 0.807 41 H 0.088 0.912 42 H 0.205 0.795 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.948 7.576 -23.125 24.832 hybrid contribution -0.207 0.263 0.098 0.349 sum -5.155 7.839 -23.027 24.865 Atomic orbital electron populations 1.21947 0.94004 1.02198 1.02071 1.19907 0.95574 0.94849 0.92073 1.22107 1.01416 0.95147 1.02141 1.21799 1.01879 0.99852 0.91659 1.21829 0.99954 0.96793 0.82321 1.45777 1.51751 1.32113 1.04395 1.19641 0.81066 0.84192 0.84788 1.90734 1.37991 1.26231 1.87033 1.20315 0.82703 0.85464 0.84803 1.90644 1.38370 1.26729 1.86433 1.42091 1.48620 1.29513 1.02525 1.17305 1.12270 1.01041 0.85769 1.24252 1.03603 0.98526 0.95964 1.78157 1.21049 1.15054 0.99699 1.44833 1.27326 1.15090 1.05808 1.20634 1.34999 1.16075 0.76905 0.84084 1.26880 0.93898 0.93805 1.07070 1.70367 1.23998 1.11420 1.39056 0.84644 0.79601 0.78931 0.72995 1.17759 1.20181 1.17769 1.22006 1.09787 1.01866 0.88946 1.22310 1.04101 0.98966 0.91098 1.23209 0.92624 1.02700 1.03894 1.22983 0.98091 1.03372 0.96943 0.92482 0.92004 0.92402 0.91956 0.91958 0.92433 0.90356 0.90274 0.90638 0.90683 0.74374 0.73912 0.80722 0.91217 0.79500 0.87832 0.87944 0.88933 0.88660 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 7.96 71.98 0.57 -1.00 16 2 C -0.02 -0.25 0.65 -52.18 -0.03 -0.28 16 3 C -0.15 -1.60 6.72 71.98 0.48 -1.12 16 4 C -0.11 -1.36 4.37 30.59 0.13 -1.23 16 5 C 0.11 1.87 4.97 86.38 0.43 2.30 16 6 N -0.69 -14.96 5.55 -464.56 -2.58 -17.53 16 7 C 0.52 15.12 7.88 87.23 0.69 15.80 16 8 O -0.54 -17.04 16.47 -3.29 -0.05 -17.09 16 9 C 0.49 17.24 7.85 87.23 0.69 17.92 16 10 O -0.54 -21.91 13.62 -3.41 -0.05 -21.95 16 11 N -0.58 -21.57 5.45 -305.32 -1.66 -23.24 16 12 C -0.06 -2.66 6.90 37.83 0.26 -2.40 16 13 C -0.05 -2.56 10.85 85.44 0.93 -1.64 16 14 N -0.31 -18.29 10.39 -56.43 -0.59 -18.88 16 15 N -0.16 -8.97 3.73 -189.98 -0.71 -9.68 16 16 C -0.36 -18.64 10.25 84.02 0.86 -17.78 16 17 H 0.14 6.40 7.83 -2.91 -0.02 6.38 16 18 C 0.00 -0.22 5.50 84.96 0.47 0.25 16 19 N -0.82 -46.69 11.81 21.66 0.26 -46.44 16 20 Si 1.02 38.03 29.55 68.60 2.03 40.06 16 21 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 22 H -0.28 -10.22 7.11 99.48 0.71 -9.51 16 23 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16 24 C -0.08 -3.50 11.50 83.41 0.96 -2.54 16 25 C -0.15 -1.52 5.15 -10.79 -0.06 -1.58 16 26 C -0.19 -1.87 9.57 30.62 0.29 -1.58 16 27 C -0.18 -1.69 9.38 30.62 0.29 -1.40 16 28 H 0.06 0.67 6.43 -2.39 -0.02 0.66 16 29 H 0.06 0.61 7.29 -2.38 -0.02 0.60 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.06 0.66 6.97 -2.39 -0.02 0.64 16 32 H 0.06 0.60 7.07 -2.39 -0.02 0.58 16 33 H 0.06 0.67 6.43 -2.39 -0.02 0.65 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.29 6.43 -2.39 -0.02 1.28 16 37 H 0.07 1.29 6.43 -2.39 -0.02 1.27 16 38 H 0.42 8.37 7.94 -92.71 -0.74 7.64 16 39 H 0.42 13.18 8.29 -92.71 -0.77 12.42 16 40 H 0.18 9.13 5.92 -2.91 -0.02 9.11 16 41 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.19 6.96 8.06 -2.91 -0.02 6.93 16 43 H 0.10 1.09 8.11 -2.39 -0.02 1.07 16 44 H 0.10 0.99 5.85 -2.39 -0.01 0.97 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.10 0.87 7.07 -2.38 -0.02 0.85 16 Total: -1.00 -71.10 382.53 3.13 -67.97 By element: Atomic # 1 Polarization: 43.53 SS G_CDS: -0.48 Total: 43.05 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 6.96 Total: 3.73 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -5.28 Total: -115.76 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.10 Total: -39.05 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -71.10 3.13 -67.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815877108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.567 kcal (2) G-P(sol) polarization free energy of solvation -71.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds