Wall clock time and date at job start Tue Mar 31 2020 17:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47136 * 2 1 4 4 C 1.53001 * 109.47055 * 240.00541 * 2 1 3 5 5 C 1.52999 * 109.47387 * 120.00179 * 2 1 3 6 6 C 1.52997 * 109.47129 * 59.99817 * 5 2 1 7 7 H 1.09004 * 115.55981 * 29.31015 * 6 5 2 8 8 C 1.53000 * 117.50028 * 243.62501 * 6 5 2 9 9 C 1.52998 * 117.50118 * 175.00162 * 6 5 2 10 10 H 1.09005 * 117.51432 * 0.02562 * 9 6 5 11 11 N 1.46504 * 117.50081 * 214.98490 * 9 6 5 12 12 C 1.34774 * 120.00048 * 154.98667 * 11 9 6 13 13 O 1.21368 * 119.99906 * 359.97438 * 12 11 9 14 14 C 1.49310 * 119.99855 * 179.97438 * 12 11 9 15 15 O 1.21403 * 119.99838 * 359.97438 * 14 12 11 16 16 N 1.34774 * 119.99855 * 180.02562 * 14 12 11 17 17 C 1.40292 * 119.99978 * 179.97438 * 16 14 12 18 18 C 1.40729 * 126.09839 * 359.97145 * 17 16 14 19 19 N 1.30876 * 108.37459 * 180.28951 * 18 17 16 20 20 N 1.40062 * 108.43323 * 359.58496 * 19 18 17 21 21 C 1.37305 * 126.05231 * 180.15764 * 20 19 18 22 22 H 1.07994 * 119.99593 * 180.31431 * 21 20 19 23 23 C 1.39009 * 119.99627 * 0.30581 * 21 20 19 24 24 N 1.31277 * 120.00365 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99452 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46952 * 90.00386 * 25 23 21 27 27 H 1.48506 * 109.47015 * 210.00428 * 25 23 21 28 28 H 1.48507 * 109.47312 * 330.00188 * 25 23 21 29 29 C 1.35780 * 126.10096 * 179.97438 * 17 16 14 30 30 H 1.08995 * 109.46936 * 299.99873 * 1 2 3 31 31 H 1.08999 * 109.47309 * 60.00054 * 1 2 3 32 32 H 1.09003 * 109.46752 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47711 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47453 * 300.00386 * 3 2 1 35 35 H 1.09009 * 109.47059 * 60.00116 * 3 2 1 36 36 H 1.09003 * 109.46794 * 299.99305 * 4 2 1 37 37 H 1.08999 * 109.47548 * 59.99551 * 4 2 1 38 38 H 1.08998 * 109.47079 * 180.02562 * 4 2 1 39 39 H 1.09001 * 109.47137 * 300.00301 * 5 2 1 40 40 H 1.08992 * 109.47061 * 179.97438 * 5 2 1 41 41 H 1.09000 * 117.49764 * 145.02570 * 8 6 5 42 42 H 1.08999 * 117.51523 * 359.97438 * 8 6 5 43 43 H 0.97002 * 119.99180 * 334.98181 * 11 9 6 44 44 H 0.97003 * 119.99937 * 359.97438 * 16 14 12 45 45 H 1.08002 * 125.80953 * 0.02562 * 18 17 16 46 46 H 0.97001 * 120.00129 * 180.02562 * 24 23 21 47 47 H 1.08004 * 126.25365 * 0.02562 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1637 1.2492 7 1 1.3621 -2.6032 0.2659 8 6 0.5861 -2.5793 2.3793 9 6 2.0285 -3.0893 2.3608 10 1 2.7195 -2.6707 3.0926 11 7 2.2436 -4.4984 2.0223 12 6 3.1168 -5.2370 2.7353 13 8 3.7252 -4.7348 3.6576 14 6 3.3356 -6.6732 2.3906 15 8 2.7266 -7.1757 1.4683 16 7 4.2083 -7.4120 3.1039 17 6 4.4135 -8.7616 2.7804 18 6 3.7802 -9.4712 1.7431 19 7 4.2223 -10.7029 1.7560 20 7 5.1583 -10.8267 2.7906 21 6 5.8486 -11.9659 3.1237 22 1 6.5470 -11.9526 3.9473 23 6 5.6482 -13.1363 2.4010 24 7 4.7994 -13.1524 1.3997 25 14 6.5868 -14.6864 2.8548 26 1 5.8075 -15.4628 3.8522 27 1 6.7961 -15.5122 1.6384 28 1 7.9031 -14.3162 3.4343 29 6 5.2586 -9.6162 3.4121 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1300 -0.7215 -1.2491 39 1 1.6767 -0.2075 2.1392 40 1 3.1300 -0.7216 1.2489 41 1 -0.2027 -3.2923 2.1395 42 1 0.3286 -1.8254 3.1232 43 1 1.7575 -4.8996 1.2849 44 1 4.6946 -7.0106 3.8410 45 1 3.0500 -9.0689 1.0564 46 1 4.6593 -13.9692 0.8957 47 1 5.8935 -9.3811 4.2536 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846072875.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:13 Heat of formation + Delta-G solvation = 24.021717 kcal Electronic energy + Delta-G solvation = -27551.198182 eV Core-core repulsion = 23543.504770 eV Total energy + Delta-G solvation = -4007.693412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.58087 -39.69071 -38.98100 -37.87967 -36.53204 -34.50418 -33.29855 -32.78720 -30.33624 -28.15679 -27.80151 -27.60362 -27.52970 -25.58113 -24.26533 -22.02666 -21.32471 -21.01731 -20.41905 -19.49083 -18.97392 -18.14309 -17.46964 -16.82996 -15.79804 -15.55429 -15.50650 -15.20836 -14.96273 -14.77966 -14.70753 -14.10038 -13.93147 -13.72635 -13.57244 -13.43748 -13.08132 -12.99919 -12.64593 -12.57419 -12.09915 -12.02395 -11.89353 -11.74978 -11.62820 -11.58773 -11.30041 -11.25327 -11.09856 -10.91911 -10.87399 -10.79625 -10.56312 -10.31051 -10.30096 -9.24327 -9.16324 -8.93700 -8.88969 -8.14241 -6.79535 -6.61496 -4.28932 1.59418 2.49346 2.92113 3.03172 3.08115 3.23610 3.55895 3.71951 3.74326 3.90259 4.26178 4.35490 4.38926 4.47966 4.56816 4.61389 4.68870 4.80946 4.97128 4.99393 5.02165 5.22401 5.26389 5.30204 5.42653 5.45925 5.50264 5.53071 5.59272 5.64939 5.68821 5.76294 5.88956 5.96177 6.04460 6.08736 6.18600 6.23993 6.34468 6.73854 6.87615 6.89526 7.14997 7.18639 7.74178 7.83534 8.07635 8.16883 8.46429 8.67864 9.29937 9.58510 10.34302 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.033325 B = 0.001745 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.019198 B =16045.253766 C =16336.948471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.078 4.078 6 C -0.154 4.154 7 H 0.113 0.887 8 C -0.186 4.186 9 C 0.080 3.920 10 H 0.139 0.861 11 N -0.677 5.677 12 C 0.520 3.480 13 O -0.527 6.527 14 C 0.484 3.516 15 O -0.523 6.523 16 N -0.582 5.582 17 C -0.070 4.070 18 C -0.026 4.026 19 N -0.260 5.260 20 N -0.138 5.138 21 C -0.322 4.322 22 H 0.118 0.882 23 C 0.046 3.954 24 N -0.767 5.767 25 Si 0.936 3.064 26 H -0.270 1.270 27 H -0.275 1.275 28 H -0.263 1.263 29 C -0.077 4.077 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.414 0.586 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.219 23.393 -0.736 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 C -0.200 4.200 4 C -0.202 4.202 5 C -0.115 4.115 6 C -0.174 4.174 7 H 0.131 0.869 8 C -0.224 4.224 9 C -0.026 4.026 10 H 0.157 0.843 11 N -0.328 5.328 12 C 0.302 3.698 13 O -0.402 6.402 14 C 0.265 3.735 15 O -0.401 6.401 16 N -0.224 5.224 17 C -0.176 4.176 18 C -0.202 4.202 19 N -0.091 5.091 20 N 0.095 4.905 21 C -0.454 4.454 22 H 0.136 0.864 23 C -0.171 4.171 24 N -0.394 5.394 25 Si 0.760 3.240 26 H -0.195 1.195 27 H -0.200 1.200 28 H -0.187 1.187 29 C -0.228 4.228 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.251 0.749 44 H 0.244 0.756 45 H 0.194 0.806 46 H 0.087 0.913 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.353 22.060 -1.453 23.003 hybrid contribution 0.420 0.191 0.655 0.801 sum -5.934 22.252 -0.798 23.043 Atomic orbital electron populations 1.21874 0.94439 1.02074 1.01360 1.20519 0.95830 0.95193 0.95190 1.21875 1.01030 0.95376 1.01671 1.21954 1.01126 1.00439 0.96711 1.21248 1.00583 0.92047 0.97663 1.22982 1.03167 0.96006 0.95214 0.86886 1.23643 0.93703 1.03647 1.01411 1.21798 0.98067 0.80962 1.01783 0.84348 1.45086 1.42886 1.09817 1.35031 1.20293 0.79656 0.87557 0.82310 1.90724 1.47372 1.73108 1.29044 1.19587 0.82798 0.86476 0.84669 1.90658 1.47992 1.71894 1.29513 1.42135 1.39225 1.08959 1.32129 1.17253 1.10596 0.83636 1.06119 1.24147 1.03979 0.91749 1.00318 1.78264 1.07018 1.15927 1.07912 1.44570 1.22899 1.05720 1.17285 1.19935 1.22358 0.85649 1.17492 0.86410 1.25668 0.96457 0.99963 0.95040 1.70204 1.26908 1.28186 1.14072 0.85802 0.79687 0.79896 0.78639 1.19521 1.20032 1.18727 1.21305 1.08825 0.87542 1.05164 0.92817 0.93039 0.92218 0.92640 0.92693 0.92712 0.92240 0.92824 0.92588 0.91462 0.91246 0.88319 0.87894 0.74912 0.75555 0.80564 0.91338 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.23 37.16 0.31 -0.52 16 2 C -0.07 -0.41 0.80 -154.51 -0.12 -0.53 16 3 C -0.14 -0.80 8.47 37.16 0.31 -0.49 16 4 C -0.15 -0.95 8.23 37.16 0.31 -0.64 16 5 C -0.08 -0.51 4.55 -26.73 -0.12 -0.63 16 6 C -0.15 -1.14 4.18 -90.62 -0.38 -1.52 16 7 H 0.11 0.84 6.06 -51.93 -0.31 0.52 16 8 C -0.19 -1.39 10.10 -26.73 -0.27 -1.66 16 9 C 0.08 0.77 6.15 -67.93 -0.42 0.35 16 10 H 0.14 1.46 7.40 -51.93 -0.38 1.08 16 11 N -0.68 -8.09 5.56 -54.28 -0.30 -8.40 16 12 C 0.52 7.90 7.88 -11.65 -0.09 7.81 16 13 O -0.53 -8.70 16.04 5.48 0.09 -8.61 16 14 C 0.48 8.75 7.85 -11.65 -0.09 8.66 16 15 O -0.52 -10.53 13.62 5.45 0.07 -10.45 16 16 N -0.58 -10.99 5.45 -10.46 -0.06 -11.05 16 17 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 18 C -0.03 -0.68 10.85 -17.02 -0.18 -0.86 16 19 N -0.26 -7.46 10.39 30.81 0.32 -7.14 16 20 N -0.14 -3.75 3.73 -11.40 -0.04 -3.79 16 21 C -0.32 -8.41 10.25 -14.81 -0.15 -8.57 16 22 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 23 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 24 N -0.77 -21.13 11.81 55.50 0.66 -20.47 16 25 Si 0.94 18.65 29.55 -169.99 -5.02 13.63 16 26 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 27 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 28 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 29 C -0.08 -1.81 11.50 -16.38 -0.19 -1.99 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.37 7.20 -51.93 -0.37 -0.01 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 36 H 0.06 0.40 6.14 -51.93 -0.32 0.08 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.41 7.88 -51.93 -0.41 0.00 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 43 H 0.41 4.59 8.30 -40.82 -0.34 4.25 16 44 H 0.41 6.66 8.29 -40.82 -0.34 6.32 16 45 H 0.18 4.43 5.92 -52.49 -0.31 4.12 16 46 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.15 2.92 8.06 -52.48 -0.42 2.50 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -31.86 391.60 -7.13 -38.99 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -6.98 Total: 13.10 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.77 Total: -1.70 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.57 Total: -50.85 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.16 Total: -19.07 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.86 -7.13 -38.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846072875.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.015 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds