Wall clock time and date at job start Tue Mar 31 2020 17:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47136 * 2 1 4 4 C 1.53001 * 109.47055 * 240.00541 * 2 1 3 5 5 C 1.52999 * 109.47387 * 120.00179 * 2 1 3 6 6 C 1.52997 * 109.47129 * 59.99817 * 5 2 1 7 7 H 1.09004 * 115.55981 * 29.31015 * 6 5 2 8 8 C 1.53000 * 117.50028 * 243.62501 * 6 5 2 9 9 C 1.52998 * 117.50118 * 175.00162 * 6 5 2 10 10 H 1.09005 * 117.51432 * 0.02562 * 9 6 5 11 11 N 1.46504 * 117.50081 * 214.98490 * 9 6 5 12 12 C 1.34774 * 120.00048 * 154.98667 * 11 9 6 13 13 O 1.21368 * 119.99906 * 359.97438 * 12 11 9 14 14 C 1.49310 * 119.99855 * 179.97438 * 12 11 9 15 15 O 1.21403 * 119.99838 * 359.97438 * 14 12 11 16 16 N 1.34774 * 119.99855 * 180.02562 * 14 12 11 17 17 C 1.40292 * 119.99978 * 179.97438 * 16 14 12 18 18 C 1.40729 * 126.09839 * 359.97145 * 17 16 14 19 19 N 1.30876 * 108.37459 * 180.28951 * 18 17 16 20 20 N 1.40062 * 108.43323 * 359.58496 * 19 18 17 21 21 C 1.37305 * 126.05231 * 180.15764 * 20 19 18 22 22 H 1.07994 * 119.99593 * 180.31431 * 21 20 19 23 23 C 1.39009 * 119.99627 * 0.30581 * 21 20 19 24 24 N 1.31277 * 120.00365 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99452 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46952 * 90.00386 * 25 23 21 27 27 H 1.48506 * 109.47015 * 210.00428 * 25 23 21 28 28 H 1.48507 * 109.47312 * 330.00188 * 25 23 21 29 29 C 1.35780 * 126.10096 * 179.97438 * 17 16 14 30 30 H 1.08995 * 109.46936 * 299.99873 * 1 2 3 31 31 H 1.08999 * 109.47309 * 60.00054 * 1 2 3 32 32 H 1.09003 * 109.46752 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47711 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47453 * 300.00386 * 3 2 1 35 35 H 1.09009 * 109.47059 * 60.00116 * 3 2 1 36 36 H 1.09003 * 109.46794 * 299.99305 * 4 2 1 37 37 H 1.08999 * 109.47548 * 59.99551 * 4 2 1 38 38 H 1.08998 * 109.47079 * 180.02562 * 4 2 1 39 39 H 1.09001 * 109.47137 * 300.00301 * 5 2 1 40 40 H 1.08992 * 109.47061 * 179.97438 * 5 2 1 41 41 H 1.09000 * 117.49764 * 145.02570 * 8 6 5 42 42 H 1.08999 * 117.51523 * 359.97438 * 8 6 5 43 43 H 0.97002 * 119.99180 * 334.98181 * 11 9 6 44 44 H 0.97003 * 119.99937 * 359.97438 * 16 14 12 45 45 H 1.08002 * 125.80953 * 0.02562 * 18 17 16 46 46 H 0.97001 * 120.00129 * 180.02562 * 24 23 21 47 47 H 1.08004 * 126.25365 * 0.02562 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1637 1.2492 7 1 1.3621 -2.6032 0.2659 8 6 0.5861 -2.5793 2.3793 9 6 2.0285 -3.0893 2.3608 10 1 2.7195 -2.6707 3.0926 11 7 2.2436 -4.4984 2.0223 12 6 3.1168 -5.2370 2.7353 13 8 3.7252 -4.7348 3.6576 14 6 3.3356 -6.6732 2.3906 15 8 2.7266 -7.1757 1.4683 16 7 4.2083 -7.4120 3.1039 17 6 4.4135 -8.7616 2.7804 18 6 3.7802 -9.4712 1.7431 19 7 4.2223 -10.7029 1.7560 20 7 5.1583 -10.8267 2.7906 21 6 5.8486 -11.9659 3.1237 22 1 6.5470 -11.9526 3.9473 23 6 5.6482 -13.1363 2.4010 24 7 4.7994 -13.1524 1.3997 25 14 6.5868 -14.6864 2.8548 26 1 5.8075 -15.4628 3.8522 27 1 6.7961 -15.5122 1.6384 28 1 7.9031 -14.3162 3.4343 29 6 5.2586 -9.6162 3.4121 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1300 -0.7215 -1.2491 39 1 1.6767 -0.2075 2.1392 40 1 3.1300 -0.7216 1.2489 41 1 -0.2027 -3.2923 2.1395 42 1 0.3286 -1.8254 3.1232 43 1 1.7575 -4.8996 1.2849 44 1 4.6946 -7.0106 3.8410 45 1 3.0500 -9.0689 1.0564 46 1 4.6593 -13.9692 0.8957 47 1 5.8935 -9.3811 4.2536 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846072875.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:12 Heat of formation + Delta-G solvation = 3.309225 kcal Electronic energy + Delta-G solvation = -27552.096343 eV Core-core repulsion = 23543.504770 eV Total energy + Delta-G solvation = -4008.591573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.05186 -41.23877 -39.96684 -39.15331 -37.29242 -36.13245 -35.06339 -33.87483 -32.30259 -29.92594 -28.43029 -28.09850 -28.03424 -27.25144 -25.78025 -23.12541 -22.71667 -21.99546 -21.76108 -21.24952 -19.71782 -19.45646 -19.11132 -17.90818 -17.45752 -16.95096 -16.88513 -16.78790 -15.80295 -15.53355 -15.50556 -15.43411 -15.36803 -14.98094 -14.85491 -14.78682 -14.15139 -14.11807 -13.51871 -13.39442 -13.23520 -13.12622 -12.96215 -12.91288 -12.62175 -12.54359 -12.51775 -12.46521 -12.28098 -12.08761 -11.98196 -11.60414 -11.47988 -11.32382 -11.07593 -10.95952 -10.88005 -10.58515 -10.14961 -9.82420 -8.63496 -8.49354 -6.27299 0.23847 1.24014 1.28901 1.41741 1.58666 1.71316 2.00190 2.11374 2.50124 2.53773 2.89016 2.90502 3.07263 3.47389 3.63129 3.78459 3.91928 4.06929 4.10145 4.22306 4.38893 4.46134 4.51410 4.64843 4.73170 4.80551 4.83862 4.94070 4.94642 4.97517 4.99419 4.99589 5.01784 5.14896 5.18625 5.20091 5.27950 5.29296 5.30279 5.36096 5.48067 5.57796 5.58268 5.89418 5.99017 6.23650 6.46210 6.66320 6.77867 7.04840 7.40483 7.61946 8.49874 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.033325 B = 0.001745 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.019198 B =16045.253766 C =16336.948471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.146 4.146 5 C -0.076 4.076 6 C -0.138 4.138 7 H 0.115 0.885 8 C -0.169 4.169 9 C 0.053 3.947 10 H 0.132 0.868 11 N -0.661 5.661 12 C 0.529 3.471 13 O -0.540 6.540 14 C 0.487 3.513 15 O -0.543 6.543 16 N -0.581 5.581 17 C -0.058 4.058 18 C -0.048 4.048 19 N -0.308 5.308 20 N -0.163 5.163 21 C -0.354 4.354 22 H 0.142 0.858 23 C -0.005 4.005 24 N -0.821 5.821 25 Si 1.020 2.980 26 H -0.264 1.264 27 H -0.276 1.276 28 H -0.245 1.245 29 C -0.074 4.074 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.419 0.581 44 H 0.424 0.576 45 H 0.176 0.824 46 H 0.278 0.722 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.003 24.924 0.440 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C -0.199 4.199 4 C -0.204 4.204 5 C -0.114 4.114 6 C -0.157 4.157 7 H 0.133 0.867 8 C -0.207 4.207 9 C -0.052 4.052 10 H 0.149 0.851 11 N -0.311 5.311 12 C 0.309 3.691 13 O -0.417 6.417 14 C 0.268 3.732 15 O -0.421 6.421 16 N -0.226 5.226 17 C -0.164 4.164 18 C -0.223 4.223 19 N -0.139 5.139 20 N 0.069 4.931 21 C -0.485 4.485 22 H 0.159 0.841 23 C -0.217 4.217 24 N -0.449 5.449 25 Si 0.838 3.162 26 H -0.189 1.189 27 H -0.201 1.201 28 H -0.168 1.168 29 C -0.225 4.225 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.121 0.879 42 H 0.137 0.863 43 H 0.256 0.744 44 H 0.261 0.739 45 H 0.193 0.807 46 H 0.088 0.912 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.156 23.660 -0.272 24.450 hybrid contribution 0.254 -0.051 0.257 0.365 sum -5.902 23.610 -0.015 24.336 Atomic orbital electron populations 1.21862 0.94039 1.02001 1.01712 1.20503 0.96086 0.95351 0.94593 1.21866 1.00898 0.95054 1.02066 1.21969 1.00793 1.00379 0.97225 1.21260 1.00284 0.91504 0.98349 1.23002 1.02039 0.95821 0.94850 0.86731 1.23723 0.92219 1.03376 1.01397 1.22001 0.99933 0.79656 1.03598 0.85071 1.45075 1.41320 1.10636 1.34109 1.19624 0.80586 0.86146 0.82730 1.90727 1.48357 1.72840 1.29818 1.20219 0.81532 0.87731 0.83672 1.90648 1.48442 1.72771 1.30283 1.42072 1.40041 1.07475 1.33002 1.17297 1.09185 0.85284 1.04637 1.24252 1.04692 0.91857 1.01529 1.78159 1.08611 1.17433 1.09729 1.44846 1.23410 1.07100 1.17718 1.20673 1.23153 0.86024 1.18644 0.84054 1.26884 0.96968 1.03474 0.94367 1.70372 1.29253 1.29348 1.15877 0.84584 0.78681 0.74689 0.78213 1.18869 1.20110 1.16778 1.22005 1.08590 0.86456 1.05459 0.92332 0.92885 0.92469 0.92876 0.92448 0.92197 0.92575 0.92513 0.93126 0.90550 0.91785 0.87918 0.86344 0.74358 0.73871 0.80741 0.91221 0.79460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.23 71.98 0.59 -0.74 16 2 C -0.07 -0.68 0.80 -52.18 -0.04 -0.72 16 3 C -0.14 -1.35 8.47 71.98 0.61 -0.74 16 4 C -0.15 -1.73 8.23 71.98 0.59 -1.14 16 5 C -0.08 -0.85 4.55 30.59 0.14 -0.71 16 6 C -0.14 -1.76 4.18 -10.79 -0.05 -1.81 16 7 H 0.11 1.48 6.06 -2.39 -0.01 1.47 16 8 C -0.17 -2.10 10.10 30.59 0.31 -1.79 16 9 C 0.05 0.93 6.15 44.99 0.28 1.21 16 10 H 0.13 2.58 7.40 -2.38 -0.02 2.56 16 11 N -0.66 -14.97 5.56 -443.99 -2.47 -17.44 16 12 C 0.53 15.50 7.88 87.23 0.69 16.19 16 13 O -0.54 -17.15 16.04 -3.30 -0.05 -17.20 16 14 C 0.49 17.36 7.85 87.23 0.69 18.05 16 15 O -0.54 -21.96 13.62 -3.41 -0.05 -22.01 16 16 N -0.58 -21.52 5.45 -305.33 -1.66 -23.18 16 17 C -0.06 -2.67 6.90 37.82 0.26 -2.41 16 18 C -0.05 -2.55 10.85 85.44 0.93 -1.62 16 19 N -0.31 -18.26 10.39 -56.43 -0.59 -18.85 16 20 N -0.16 -8.97 3.73 -189.98 -0.71 -9.67 16 21 C -0.35 -18.55 10.25 84.02 0.86 -17.69 16 22 H 0.14 6.42 7.83 -2.91 -0.02 6.39 16 23 C 0.00 -0.24 5.50 84.96 0.47 0.22 16 24 N -0.82 -46.69 11.81 21.66 0.26 -46.43 16 25 Si 1.02 38.05 29.55 68.60 2.03 40.08 16 26 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 27 H -0.28 -10.20 7.11 99.48 0.71 -9.49 16 28 H -0.24 -8.30 7.11 99.48 0.71 -7.60 16 29 C -0.07 -3.45 11.50 83.41 0.96 -2.49 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.58 7.20 -2.39 -0.02 0.56 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.06 0.69 6.14 -2.39 -0.01 0.67 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 0.74 7.88 -2.39 -0.02 0.72 16 40 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.12 1.16 8.03 -2.39 -0.02 1.14 16 43 H 0.42 8.78 8.30 -92.71 -0.77 8.01 16 44 H 0.42 13.19 8.29 -92.71 -0.77 12.42 16 45 H 0.18 9.12 5.92 -2.91 -0.02 9.11 16 46 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 47 H 0.19 6.95 8.06 -2.91 -0.02 6.93 16 Total: -1.00 -70.85 391.60 3.51 -67.34 By element: Atomic # 1 Polarization: 44.09 SS G_CDS: -0.53 Total: 43.57 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 7.28 Total: 3.80 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -5.17 Total: -115.58 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.10 Total: -39.21 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -70.85 3.51 -67.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846072875.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.649 kcal (2) G-P(sol) polarization free energy of solvation -70.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds