Wall clock time and date at job start Tue Mar 31 2020 18:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47059 * 2 1 4 4 C 1.50699 * 109.46604 * 120.00099 * 2 1 3 5 5 O 1.21284 * 119.99896 * 239.99625 * 4 2 1 6 6 N 1.34776 * 120.00619 * 60.00117 * 4 2 1 7 7 C 1.46497 * 120.00354 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.46936 * 179.97438 * 7 6 4 9 9 N 1.46497 * 109.46936 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00141 * 270.00211 * 9 8 7 11 11 C 1.34776 * 120.00068 * 90.00213 * 9 8 7 12 12 O 1.21577 * 119.99872 * 359.97438 * 11 9 8 13 13 N 1.34783 * 120.00152 * 180.27498 * 11 9 8 14 14 C 1.39458 * 119.99778 * 174.05661 * 13 11 9 15 15 C 1.38650 * 119.64534 * 185.23342 * 14 13 11 16 16 C 1.40815 * 118.67628 * 179.97438 * 15 14 13 17 17 C 1.41542 * 121.00184 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00123 * 213.65680 * 17 16 15 19 19 C 1.40030 * 119.99920 * 33.64360 * 17 16 15 20 20 N 1.30743 * 119.99956 * 356.24261 * 19 17 16 21 21 Si 1.86801 * 120.00104 * 176.23866 * 19 17 16 22 22 H 1.48494 * 109.47023 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.46970 * 120.00701 * 21 19 17 24 24 H 1.48502 * 109.46772 * 240.00428 * 21 19 17 25 25 C 1.41166 * 118.00513 * 0.02562 * 16 15 14 26 26 C 1.36599 * 119.12451 * 359.97438 * 25 16 15 27 27 N 1.32066 * 121.26232 * 359.74108 * 26 25 16 28 28 H 1.09001 * 109.46985 * 300.00306 * 1 2 3 29 29 H 1.08999 * 109.46726 * 59.99769 * 1 2 3 30 30 H 1.08993 * 109.47397 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46607 * 239.99920 * 2 1 3 32 32 H 1.09003 * 109.46968 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47540 * 299.99733 * 3 2 1 34 34 H 1.09001 * 109.47472 * 59.99992 * 3 2 1 35 35 H 0.97006 * 119.99580 * 359.97438 * 6 4 2 36 36 H 1.08997 * 109.47036 * 60.00227 * 7 6 4 37 37 H 1.08998 * 109.47136 * 299.99481 * 7 6 4 38 38 H 1.09001 * 109.47326 * 60.00197 * 8 7 6 39 39 H 1.08998 * 109.46972 * 299.99811 * 8 7 6 40 40 H 1.09007 * 109.47372 * 270.00220 * 10 9 8 41 41 H 1.09001 * 109.47419 * 29.99967 * 10 9 8 42 42 H 1.09003 * 109.47553 * 149.99809 * 10 9 8 43 43 H 0.96994 * 119.99988 * 354.06135 * 13 11 9 44 44 H 1.08004 * 120.66160 * 0.02562 * 15 14 13 45 45 H 0.96996 * 120.00359 * 179.97438 * 20 19 17 46 46 H 1.07998 * 120.44195 * 179.97438 * 25 16 15 47 47 H 1.08002 * 119.36735 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -0.1211 2.0288 6 7 1.7067 -2.0008 1.4438 7 6 2.1954 -2.6915 2.6397 8 6 1.6847 -4.1338 2.6401 9 7 2.1739 -4.8247 3.8357 10 6 3.4537 -5.5368 3.7981 11 6 1.4467 -4.8053 4.9702 12 8 0.3849 -4.2140 5.0015 13 7 1.8994 -5.4363 6.0718 14 6 1.2107 -5.3135 7.2782 15 6 1.7400 -5.8747 8.4303 16 6 1.0279 -5.7379 9.6374 17 6 1.5225 -6.2917 10.8424 18 1 0.8355 -6.6733 11.5832 19 6 2.9025 -6.3451 11.0738 20 7 3.7364 -5.9514 10.1471 21 14 3.5519 -6.9788 12.7067 22 1 2.4118 -7.3586 13.5789 23 1 4.4120 -8.1659 12.4701 24 1 4.3482 -5.9147 13.3691 25 6 -0.1948 -5.0328 9.6094 26 6 -0.6364 -4.5146 8.4252 27 7 0.0603 -4.6570 7.3124 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.1487 -2.4721 0.8054 36 1 1.8324 -2.1778 3.5299 37 1 3.2854 -2.6917 2.6393 38 1 2.0473 -4.6479 1.7499 39 1 0.5947 -4.1333 2.6407 40 1 3.2860 -6.5696 3.4924 41 1 4.1193 -5.0505 3.0850 42 1 3.9080 -5.5203 4.7888 43 1 2.7041 -5.9757 6.0255 44 1 2.6803 -6.4054 8.4026 45 1 4.6923 -5.9881 10.3074 46 1 -0.7734 -4.9048 10.5123 47 1 -1.5715 -3.9748 8.3992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871728080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:47 Heat of formation + Delta-G solvation = -26.397480 kcal Electronic energy + Delta-G solvation = -28148.367468 eV Core-core repulsion = 24138.487715 eV Total energy + Delta-G solvation = -4009.879753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.24769 -39.85253 -38.21585 -36.04700 -34.72399 -34.53759 -34.28825 -33.66089 -30.50698 -29.86061 -28.32894 -27.39126 -26.48762 -25.96401 -24.29808 -22.60790 -21.91166 -21.32016 -20.17796 -19.31967 -18.04058 -17.59159 -17.33939 -16.50406 -15.98649 -15.70887 -15.39004 -15.19532 -14.79432 -14.60982 -14.18019 -14.13320 -14.04865 -13.66544 -13.35594 -13.20745 -12.97147 -12.79834 -12.60581 -12.59678 -12.38249 -12.36054 -12.23033 -12.08778 -11.48907 -11.43314 -11.41974 -11.33489 -11.18276 -10.89324 -10.29157 -10.10447 -9.93640 -9.74604 -9.60139 -9.38718 -9.21024 -8.60353 -7.87554 -7.75464 -7.01318 -6.68398 -4.62907 2.50341 2.60412 2.67204 2.81777 3.03801 3.08988 3.22428 3.25399 3.78210 3.89475 4.21628 4.40742 4.56477 4.64919 4.72824 4.81532 4.85780 5.02939 5.07807 5.28522 5.29116 5.39979 5.41229 5.54045 5.59805 5.61646 5.66151 5.69113 5.83402 5.92528 5.94472 5.97970 6.20965 6.44978 6.60053 6.65365 6.79289 6.96313 7.14571 7.18561 7.30419 7.40140 7.50122 7.89904 8.07812 8.08562 8.30458 8.47219 8.73432 8.79507 9.10025 9.69465 10.16990 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.002168 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.817018 B =12910.960840 C =13144.927868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.133 4.133 4 C 0.514 3.486 5 O -0.537 6.537 6 N -0.727 5.727 7 C 0.101 3.899 8 C 0.129 3.871 9 N -0.637 5.637 10 C 0.077 3.923 11 C 0.694 3.306 12 O -0.528 6.528 13 N -0.665 5.665 14 C 0.349 3.651 15 C -0.234 4.234 16 C 0.141 3.859 17 C -0.458 4.458 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.805 5.805 21 Si 0.918 3.082 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.274 4.274 26 C 0.114 3.886 27 N -0.547 5.547 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.399 0.601 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.405 0.595 44 H 0.136 0.864 45 H 0.278 0.722 46 H 0.103 0.897 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.078 3.003 -19.926 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 C -0.191 4.191 4 C 0.300 3.700 5 O -0.413 6.413 6 N -0.379 5.379 7 C -0.024 4.024 8 C 0.004 3.996 9 N -0.378 5.378 10 C -0.066 4.066 11 C 0.394 3.606 12 O -0.398 6.398 13 N -0.314 5.314 14 C 0.122 3.878 15 C -0.259 4.259 16 C 0.133 3.867 17 C -0.490 4.490 18 H 0.099 0.901 19 C -0.144 4.144 20 N -0.433 5.433 21 Si 0.742 3.258 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.298 4.298 26 C -0.039 4.039 27 N -0.265 5.265 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.233 0.767 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.241 0.759 44 H 0.154 0.846 45 H 0.089 0.911 46 H 0.121 0.879 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.728 4.271 -20.163 20.624 hybrid contribution 1.095 -1.145 1.222 2.001 sum 1.823 3.126 -18.942 19.284 Atomic orbital electron populations 1.21806 0.92776 1.02634 1.03099 1.21306 0.97689 0.98102 0.96428 1.21617 1.01765 0.93556 1.02171 1.20721 0.80071 0.81489 0.87727 1.90728 1.37713 1.65851 1.47015 1.45865 1.54090 1.12388 1.25586 1.21802 0.99331 0.93000 0.88278 1.21257 1.01183 0.90426 0.86686 1.46975 1.22485 1.57090 1.11256 1.21759 0.85156 0.96620 1.03107 1.16038 0.83908 0.80709 0.79907 1.91013 1.20996 1.45943 1.81853 1.42684 1.29541 1.51778 1.07391 1.18055 0.90526 0.95693 0.83480 1.21773 1.04680 1.09415 0.90062 1.17623 0.89485 0.87385 0.92254 1.19556 0.91737 1.35668 1.02067 0.90105 1.25915 0.96962 0.92863 0.98641 1.69715 1.04013 1.36207 1.33320 0.86104 0.79333 0.78894 0.81433 1.18464 1.19895 1.19898 1.21789 1.01968 1.07953 0.98094 1.21500 0.97292 0.97087 0.88058 1.67199 1.07457 1.22303 1.29590 0.91840 0.91371 0.92049 0.88592 0.91990 0.92062 0.91822 0.76670 0.90631 0.91551 0.90362 0.89120 0.92597 0.90995 0.91077 0.75883 0.84612 0.91055 0.87892 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.09 37.16 0.34 -0.59 16 2 C -0.11 -0.88 3.26 -91.77 -0.30 -1.18 16 3 C -0.13 -1.10 8.48 37.16 0.32 -0.78 16 4 C 0.51 5.99 7.15 -10.99 -0.08 5.91 16 5 O -0.54 -8.84 15.98 5.55 0.09 -8.75 16 6 N -0.73 -7.13 5.45 -60.30 -0.33 -7.46 16 7 C 0.10 1.24 6.00 -4.04 -0.02 1.22 16 8 C 0.13 1.43 5.52 -4.04 -0.02 1.41 16 9 N -0.64 -8.76 2.87 -187.35 -0.54 -9.30 16 10 C 0.08 0.76 10.16 59.85 0.61 1.37 16 11 C 0.69 13.45 8.24 -86.91 -0.72 12.73 16 12 O -0.53 -12.37 14.18 5.30 0.08 -12.30 16 13 N -0.66 -13.30 5.22 -15.86 -0.08 -13.38 16 14 C 0.35 8.56 7.42 -154.68 -1.15 7.41 16 15 C -0.23 -5.95 8.62 -38.46 -0.33 -6.28 16 16 C 0.14 3.73 5.58 -106.55 -0.59 3.13 16 17 C -0.46 -11.83 9.11 -37.65 -0.34 -12.18 16 18 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 19 C 0.07 1.77 5.43 -17.34 -0.09 1.68 16 20 N -0.81 -20.02 10.63 55.55 0.59 -19.43 16 21 Si 0.92 18.28 29.56 -169.99 -5.03 13.25 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 25 C -0.27 -6.77 9.85 -39.06 -0.38 -7.15 16 26 C 0.11 2.78 11.10 -18.04 -0.20 2.58 16 27 N -0.55 -14.16 7.86 -12.75 -0.10 -14.26 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.33 7.56 -51.93 -0.39 -0.07 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.40 2.56 7.89 -40.82 -0.32 2.24 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 39 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 42 H 0.07 0.73 6.45 -51.93 -0.33 0.40 16 43 H 0.40 6.70 6.51 -40.82 -0.27 6.44 16 44 H 0.14 3.44 6.19 -52.48 -0.32 3.12 16 45 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 46 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 47 H 0.12 2.61 8.06 -52.49 -0.42 2.18 16 LS Contribution 391.70 15.07 5.90 5.90 Total: -1.00 -35.25 391.70 -9.45 -44.70 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -7.06 Total: 11.75 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -2.98 Total: 9.28 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -0.46 Total: -63.84 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.16 Total: -21.05 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.25 -9.45 -44.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.305 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds