Wall clock time and date at job start Tue Mar 31 2020 18:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47059 * 2 1 4 4 C 1.50699 * 109.46604 * 120.00099 * 2 1 3 5 5 O 1.21284 * 119.99896 * 239.99625 * 4 2 1 6 6 N 1.34776 * 120.00619 * 60.00117 * 4 2 1 7 7 C 1.46497 * 120.00354 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.46936 * 179.97438 * 7 6 4 9 9 N 1.46497 * 109.46936 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00141 * 270.00211 * 9 8 7 11 11 C 1.34776 * 120.00068 * 90.00213 * 9 8 7 12 12 O 1.21577 * 119.99872 * 359.97438 * 11 9 8 13 13 N 1.34783 * 120.00152 * 180.27498 * 11 9 8 14 14 C 1.39458 * 119.99778 * 174.05661 * 13 11 9 15 15 C 1.38650 * 119.64534 * 185.23342 * 14 13 11 16 16 C 1.40815 * 118.67628 * 179.97438 * 15 14 13 17 17 C 1.41542 * 121.00184 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00123 * 213.65680 * 17 16 15 19 19 C 1.40030 * 119.99920 * 33.64360 * 17 16 15 20 20 N 1.30743 * 119.99956 * 356.24261 * 19 17 16 21 21 Si 1.86801 * 120.00104 * 176.23866 * 19 17 16 22 22 H 1.48494 * 109.47023 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.46970 * 120.00701 * 21 19 17 24 24 H 1.48502 * 109.46772 * 240.00428 * 21 19 17 25 25 C 1.41166 * 118.00513 * 0.02562 * 16 15 14 26 26 C 1.36599 * 119.12451 * 359.97438 * 25 16 15 27 27 N 1.32066 * 121.26232 * 359.74108 * 26 25 16 28 28 H 1.09001 * 109.46985 * 300.00306 * 1 2 3 29 29 H 1.08999 * 109.46726 * 59.99769 * 1 2 3 30 30 H 1.08993 * 109.47397 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46607 * 239.99920 * 2 1 3 32 32 H 1.09003 * 109.46968 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47540 * 299.99733 * 3 2 1 34 34 H 1.09001 * 109.47472 * 59.99992 * 3 2 1 35 35 H 0.97006 * 119.99580 * 359.97438 * 6 4 2 36 36 H 1.08997 * 109.47036 * 60.00227 * 7 6 4 37 37 H 1.08998 * 109.47136 * 299.99481 * 7 6 4 38 38 H 1.09001 * 109.47326 * 60.00197 * 8 7 6 39 39 H 1.08998 * 109.46972 * 299.99811 * 8 7 6 40 40 H 1.09007 * 109.47372 * 270.00220 * 10 9 8 41 41 H 1.09001 * 109.47419 * 29.99967 * 10 9 8 42 42 H 1.09003 * 109.47553 * 149.99809 * 10 9 8 43 43 H 0.96994 * 119.99988 * 354.06135 * 13 11 9 44 44 H 1.08004 * 120.66160 * 0.02562 * 15 14 13 45 45 H 0.96996 * 120.00359 * 179.97438 * 20 19 17 46 46 H 1.07998 * 120.44195 * 179.97438 * 25 16 15 47 47 H 1.08002 * 119.36735 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -0.1211 2.0288 6 7 1.7067 -2.0008 1.4438 7 6 2.1954 -2.6915 2.6397 8 6 1.6847 -4.1338 2.6401 9 7 2.1739 -4.8247 3.8357 10 6 3.4537 -5.5368 3.7981 11 6 1.4467 -4.8053 4.9702 12 8 0.3849 -4.2140 5.0015 13 7 1.8994 -5.4363 6.0718 14 6 1.2107 -5.3135 7.2782 15 6 1.7400 -5.8747 8.4303 16 6 1.0279 -5.7379 9.6374 17 6 1.5225 -6.2917 10.8424 18 1 0.8355 -6.6733 11.5832 19 6 2.9025 -6.3451 11.0738 20 7 3.7364 -5.9514 10.1471 21 14 3.5519 -6.9788 12.7067 22 1 2.4118 -7.3586 13.5789 23 1 4.4120 -8.1659 12.4701 24 1 4.3482 -5.9147 13.3691 25 6 -0.1948 -5.0328 9.6094 26 6 -0.6364 -4.5146 8.4252 27 7 0.0603 -4.6570 7.3124 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.1487 -2.4721 0.8054 36 1 1.8324 -2.1778 3.5299 37 1 3.2854 -2.6917 2.6393 38 1 2.0473 -4.6479 1.7499 39 1 0.5947 -4.1333 2.6407 40 1 3.2860 -6.5696 3.4924 41 1 4.1193 -5.0505 3.0850 42 1 3.9080 -5.5203 4.7888 43 1 2.7041 -5.9757 6.0255 44 1 2.6803 -6.4054 8.4026 45 1 4.6923 -5.9881 10.3074 46 1 -0.7734 -4.9048 10.5123 47 1 -1.5715 -3.9748 8.3992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871728080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:46 Heat of formation + Delta-G solvation = -50.250983 kcal Electronic energy + Delta-G solvation = -28149.401833 eV Core-core repulsion = 24138.487715 eV Total energy + Delta-G solvation = -4010.914118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.64006 -40.93817 -39.95148 -37.27825 -36.08982 -35.80747 -35.49900 -35.19655 -32.42339 -31.11787 -29.85777 -27.99508 -27.91150 -27.47645 -25.34095 -23.82099 -23.62977 -22.84554 -21.27531 -20.67932 -19.55839 -19.19592 -18.18996 -17.75333 -17.41249 -17.07493 -16.69660 -16.48197 -16.11107 -16.04006 -15.86177 -15.49248 -15.08677 -14.81756 -14.64491 -14.58640 -14.32853 -14.28457 -13.90981 -13.68350 -13.29431 -13.20814 -13.18286 -13.12681 -12.87404 -12.86302 -12.67679 -12.38472 -12.13040 -12.06580 -11.99906 -11.84157 -11.51156 -11.27503 -11.20034 -10.87138 -10.19717 -9.85634 -9.76263 -9.65892 -8.84110 -8.53216 -6.59337 0.80196 1.00440 1.41413 1.42060 1.53731 1.57417 1.59631 2.17442 2.22258 2.28505 2.84902 2.92709 3.68780 3.71483 3.85231 3.87792 4.00601 4.05284 4.12008 4.22188 4.35914 4.48616 4.61119 4.64836 4.74761 4.75581 4.81050 4.87527 4.88907 4.89525 4.91572 4.93510 5.07236 5.10166 5.25444 5.27589 5.31883 5.35898 5.47169 5.53391 5.64521 5.75946 5.99349 6.23151 6.50420 6.55561 6.76748 6.81894 6.87489 7.22763 7.53194 7.85582 8.34475 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.002168 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.817018 B =12910.960840 C =13144.927868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.506 3.494 5 O -0.594 6.594 6 N -0.711 5.711 7 C 0.112 3.888 8 C 0.133 3.867 9 N -0.627 5.627 10 C 0.069 3.931 11 C 0.687 3.313 12 O -0.575 6.575 13 N -0.659 5.659 14 C 0.347 3.653 15 C -0.249 4.249 16 C 0.111 3.889 17 C -0.486 4.486 18 H 0.083 0.917 19 C 0.032 3.968 20 N -0.828 5.828 21 Si 0.993 3.007 22 H -0.258 1.258 23 H -0.262 1.262 24 H -0.270 1.270 25 C -0.286 4.286 26 C 0.108 3.892 27 N -0.572 5.572 28 H 0.040 0.960 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.038 0.962 35 H 0.419 0.581 36 H 0.022 0.978 37 H 0.067 0.933 38 H 0.131 0.869 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.419 0.581 44 H 0.132 0.868 45 H 0.288 0.712 46 H 0.118 0.882 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 1.873 -21.881 22.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 C -0.192 4.192 4 C 0.294 3.706 5 O -0.474 6.474 6 N -0.364 5.364 7 C -0.015 4.015 8 C 0.009 3.991 9 N -0.366 5.366 10 C -0.073 4.073 11 C 0.388 3.612 12 O -0.450 6.450 13 N -0.310 5.310 14 C 0.119 3.881 15 C -0.275 4.275 16 C 0.103 3.897 17 C -0.517 4.517 18 H 0.101 0.899 19 C -0.182 4.182 20 N -0.455 5.455 21 Si 0.814 3.186 22 H -0.182 1.182 23 H -0.186 1.186 24 H -0.195 1.195 25 C -0.310 4.310 26 C -0.045 4.045 27 N -0.292 5.292 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.149 0.851 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.257 0.743 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.149 0.851 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.258 0.742 44 H 0.150 0.850 45 H 0.099 0.901 46 H 0.136 0.864 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.580 3.099 -22.212 22.483 hybrid contribution 0.869 -0.763 1.737 2.087 sum 2.449 2.336 -20.475 20.752 Atomic orbital electron populations 1.21832 0.91507 1.03612 1.03176 1.21373 0.98501 0.97363 0.95370 1.21641 1.01005 0.94211 1.02364 1.21599 0.79045 0.81646 0.88346 1.90704 1.40428 1.67096 1.49218 1.45720 1.53704 1.12067 1.24935 1.21525 0.99165 0.93421 0.87352 1.21460 1.00599 0.89811 0.87213 1.47007 1.23049 1.56518 1.10024 1.22079 0.83492 0.97939 1.03772 1.16285 0.83882 0.80143 0.80878 1.90970 1.23319 1.47749 1.82928 1.42584 1.29705 1.52136 1.06567 1.18269 0.90290 0.94698 0.84852 1.21738 1.04807 1.10516 0.90453 1.18066 0.90483 0.88111 0.93042 1.19827 0.92954 1.36756 1.02197 0.89884 1.26820 0.96568 0.92490 1.02344 1.69764 1.04760 1.35872 1.35125 0.84982 0.78629 0.78486 0.76530 1.18153 1.18636 1.19504 1.21967 1.01920 1.08164 0.98923 1.21950 0.98039 0.96790 0.87743 1.67331 1.08296 1.23252 1.30303 0.94120 0.88944 0.90667 0.85054 0.93247 0.89151 0.94276 0.74278 0.95898 0.91487 0.85074 0.90460 0.90106 0.87932 0.91871 0.74198 0.85020 0.90096 0.86376 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.09 71.98 0.65 -0.87 16 2 C -0.11 -1.42 3.26 -11.54 -0.04 -1.46 16 3 C -0.13 -2.11 8.48 71.98 0.61 -1.50 16 4 C 0.51 11.62 7.15 87.66 0.63 12.25 16 5 O -0.59 -20.42 15.98 -3.04 -0.05 -20.47 16 6 N -0.71 -13.13 5.45 -463.07 -2.52 -15.66 16 7 C 0.11 2.72 6.00 86.38 0.52 3.24 16 8 C 0.13 2.70 5.52 86.38 0.48 3.18 16 9 N -0.63 -16.48 2.87 -864.91 -2.48 -18.97 16 10 C 0.07 1.18 10.16 127.77 1.30 2.48 16 11 C 0.69 26.97 8.24 179.05 1.48 28.44 16 12 O -0.58 -27.84 14.18 -3.96 -0.06 -27.89 16 13 N -0.66 -26.84 5.22 -322.36 -1.68 -28.52 16 14 C 0.35 17.52 7.42 132.76 0.99 18.50 16 15 C -0.25 -13.09 8.62 23.00 0.20 -12.89 16 16 C 0.11 6.05 5.58 -21.12 -0.12 5.93 16 17 C -0.49 -25.48 9.11 23.52 0.21 -25.26 16 18 H 0.08 4.17 7.85 -2.91 -0.02 4.14 16 19 C 0.03 1.57 5.43 85.29 0.46 2.03 16 20 N -0.83 -41.36 10.63 21.84 0.23 -41.13 16 21 Si 0.99 36.90 29.56 68.60 2.03 38.92 16 22 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 23 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 24 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 25 C -0.29 -14.45 9.85 22.61 0.22 -14.23 16 26 C 0.11 5.37 11.10 84.27 0.94 6.30 16 27 N -0.57 -30.50 7.86 -194.26 -1.53 -32.02 16 28 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.59 7.56 -2.39 -0.02 0.57 16 31 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.04 0.79 8.10 -2.39 -0.02 0.77 16 35 H 0.42 4.27 7.89 -92.70 -0.73 3.54 16 36 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.13 1.37 8.07 -2.39 -0.02 1.35 16 39 H 0.08 1.85 7.42 -2.39 -0.02 1.83 16 40 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.10 1.18 8.07 -2.39 -0.02 1.16 16 42 H 0.06 1.21 6.45 -2.39 -0.02 1.19 16 43 H 0.42 13.95 6.51 -92.71 -0.60 13.35 16 44 H 0.13 6.88 6.19 -2.91 -0.02 6.86 16 45 H 0.29 12.93 8.29 -92.71 -0.77 12.16 16 46 H 0.12 5.41 8.06 -2.91 -0.02 5.39 16 47 H 0.15 6.34 8.06 -2.91 -0.02 6.32 16 Total: -1.00 -82.16 391.70 2.13 -80.04 By element: Atomic # 1 Polarization: 39.91 SS G_CDS: -0.34 Total: 39.57 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 8.52 Total: 26.14 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -7.98 Total: -136.30 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -0.10 Total: -48.36 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.92 kcal Total: -82.16 2.13 -80.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.784 kcal (2) G-P(sol) polarization free energy of solvation -82.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds