Wall clock time and date at job start Tue Mar 31 2020 18:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40052 * 125.99285 * 2 1 4 4 C 1.30823 * 108.36711 * 180.02562 * 3 2 1 5 5 C 1.40344 * 108.20617 * 0.02562 * 4 3 2 6 6 N 1.40484 * 126.11567 * 179.73684 * 5 4 3 7 7 C 1.34775 * 119.99870 * 0.02562 * 6 5 4 8 8 O 1.21407 * 120.00354 * 0.02562 * 7 6 5 9 9 C 1.49328 * 120.00132 * 180.02562 * 7 6 5 10 10 O 1.21357 * 119.99768 * 0.02562 * 9 7 6 11 11 N 1.34775 * 120.00132 * 179.97438 * 9 7 6 12 12 C 1.46498 * 120.00196 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47346 * 180.02562 * 12 11 9 14 14 C 1.52993 * 109.47153 * 299.99749 * 13 12 11 15 15 C 1.52998 * 109.47057 * 60.00003 * 13 12 11 16 16 C 1.50699 * 109.46978 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00217 * 0.02562 * 16 13 12 18 18 C 1.37877 * 119.99648 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00555 * 0.02562 * 18 16 13 20 20 Si 1.86810 * 119.99800 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.46898 * 60.00444 * 20 18 16 22 22 H 1.48497 * 109.46900 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47224 * 300.00565 * 20 18 16 24 24 C 1.35218 * 125.99378 * 180.02562 * 2 1 3 25 25 C 1.50701 * 126.17899 * 0.02562 * 24 2 1 26 26 C 1.52998 * 117.49826 * 132.45143 * 25 24 2 27 27 C 1.52999 * 117.49982 * 63.78967 * 25 24 2 28 28 H 1.08999 * 109.47310 * 95.17545 * 1 2 3 29 29 H 1.08998 * 109.47258 * 215.17605 * 1 2 3 30 30 H 1.09000 * 109.46992 * 335.17558 * 1 2 3 31 31 H 1.07995 * 125.90207 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00244 * 180.02562 * 6 5 4 33 33 H 0.97006 * 119.99777 * 359.97438 * 11 9 7 34 34 H 1.09001 * 109.46664 * 299.99989 * 12 11 9 35 35 H 1.08996 * 109.47179 * 59.99566 * 12 11 9 36 36 H 1.09000 * 109.47251 * 59.99893 * 14 13 12 37 37 H 1.08997 * 109.47372 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.47592 * 300.00249 * 14 13 12 39 39 H 1.09001 * 109.47438 * 59.99766 * 15 13 12 40 40 H 1.08999 * 109.47461 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47290 * 299.99958 * 15 13 12 42 42 H 0.96995 * 120.00899 * 180.02562 * 19 18 16 43 43 H 1.08999 * 115.54897 * 278.11906 * 25 24 2 44 44 H 1.09002 * 117.50080 * 359.97438 * 26 25 24 45 45 H 1.09007 * 117.49833 * 145.02329 * 26 25 24 46 46 H 1.08997 * 117.50032 * 214.97962 * 27 25 24 47 47 H 1.08999 * 117.49907 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2881 1.1331 0.0000 4 6 3.5349 0.7370 -0.0006 5 6 3.5491 -0.6664 -0.0015 6 7 4.6923 -1.4828 -0.0076 7 6 5.9190 -0.9247 -0.0126 8 8 6.0362 0.2837 -0.0114 9 6 7.1342 -1.7925 -0.0196 10 8 7.0172 -3.0004 -0.0212 11 7 8.3609 -1.2343 -0.0251 12 6 9.5531 -2.0857 -0.0326 13 6 10.8065 -1.2082 -0.0371 14 6 10.8045 -0.3227 -1.2847 15 6 10.8168 -0.3272 1.2137 16 6 12.0328 -2.0841 -0.0441 17 1 11.9286 -3.1591 -0.0456 18 6 13.2877 -1.5130 -0.0497 19 7 13.4146 -0.2041 -0.0484 20 14 14.8079 -2.5988 -0.0577 21 1 14.7981 -3.4552 -1.2708 22 1 16.0244 -1.7471 -0.0622 23 1 14.8096 -3.4570 1.1541 24 6 2.2597 -1.0940 -0.0005 25 6 1.7983 -2.5287 -0.0017 26 6 2.4544 -3.4809 -1.0035 27 6 1.0119 -3.0168 -1.2199 28 1 -0.3634 -0.0927 -1.0235 29 1 -0.3634 -0.8400 0.5920 30 1 -0.3633 0.9327 0.4315 31 1 4.4033 1.3790 -0.0011 32 1 4.5988 -2.4483 -0.0081 33 1 8.4544 -0.2688 -0.0250 34 1 9.5547 -2.7163 0.8565 35 1 9.5455 -2.7138 -0.9234 36 1 9.9175 0.3108 -1.2793 37 1 11.6972 0.3027 -1.2878 38 1 10.7972 -0.9504 -2.1759 39 1 10.8182 -0.9581 2.1025 40 1 11.7099 0.2976 1.2107 41 1 9.9298 0.3063 1.2192 42 1 14.2974 0.1977 -0.0527 43 1 1.5218 -2.9344 0.9715 44 1 3.2195 -3.0696 -1.6620 45 1 2.6092 -4.5132 -0.6895 46 1 0.2182 -3.7440 -1.0483 47 1 0.8278 -2.3002 -2.0203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873913982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:01 Heat of formation + Delta-G solvation = 37.478730 kcal Electronic energy + Delta-G solvation = -28672.427552 eV Core-core repulsion = 24665.317680 eV Total energy + Delta-G solvation = -4007.109872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83843 -40.27452 -38.37462 -37.46886 -36.50618 -35.13211 -33.34543 -32.88614 -30.90315 -29.80556 -27.20718 -26.04667 -25.72064 -25.25977 -23.96091 -23.42946 -22.83912 -21.48640 -20.15467 -19.90607 -18.92878 -18.03779 -17.45939 -16.73026 -16.17797 -15.92817 -15.64899 -15.51572 -15.14763 -14.92004 -14.60021 -14.52862 -14.14494 -14.00414 -13.56965 -13.11195 -13.00250 -12.93669 -12.70453 -12.31915 -12.22582 -12.00117 -11.40821 -11.40062 -11.31653 -11.18406 -11.13578 -10.92045 -10.86342 -10.74139 -10.65103 -10.39778 -10.20113 -9.65319 -9.56230 -9.49109 -9.25350 -8.81318 -8.63289 -8.37180 -7.89478 -6.02415 -4.13415 1.25256 1.75382 2.06125 2.59313 2.65564 3.22030 3.29826 3.34662 3.37551 3.49214 3.89254 4.01242 4.28655 4.37190 4.39259 4.44823 4.69927 4.75604 4.83846 5.00913 5.06240 5.16542 5.24097 5.25820 5.41493 5.48931 5.57378 5.65399 5.92604 6.10171 6.22520 6.46427 6.59681 6.61021 6.69071 6.81808 6.85238 6.93269 7.00413 7.07015 7.32988 7.45014 7.55207 7.66028 7.70734 7.93115 8.00336 8.11904 8.29348 8.39416 8.86519 9.52460 10.98919 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026887 B = 0.002250 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.152300 B =12443.741429 C =13215.591014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.365 5.365 3 N -0.285 5.285 4 C 0.056 3.944 5 C 0.006 3.994 6 N -0.615 5.615 7 C 0.507 3.493 8 O -0.510 6.510 9 C 0.501 3.499 10 O -0.534 6.534 11 N -0.677 5.677 12 C 0.128 3.872 13 C 0.056 3.944 14 C -0.134 4.134 15 C -0.134 4.134 16 C -0.508 4.508 17 H 0.058 0.942 18 C 0.067 3.933 19 N -0.884 5.884 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.081 3.919 25 C -0.105 4.105 26 C -0.164 4.164 27 C -0.165 4.165 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.210 0.790 32 H 0.421 0.579 33 H 0.412 0.588 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.009 0.991 37 H 0.087 0.913 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.087 0.913 41 H 0.009 0.991 42 H 0.261 0.739 43 H 0.126 0.874 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.104 0.896 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.906 -2.743 -0.554 26.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.149 5.149 3 N -0.106 5.106 4 C -0.131 4.131 5 C -0.098 4.098 6 N -0.262 5.262 7 C 0.289 3.711 8 O -0.384 6.384 9 C 0.280 3.720 10 O -0.412 6.412 11 N -0.329 5.329 12 C 0.006 3.994 13 C 0.055 3.945 14 C -0.192 4.192 15 C -0.192 4.192 16 C -0.547 4.547 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.049 4.049 25 C -0.125 4.125 26 C -0.201 4.201 27 C -0.202 4.202 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.226 0.774 32 H 0.259 0.741 33 H 0.249 0.751 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.028 0.972 37 H 0.106 0.894 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.106 0.894 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.143 0.857 44 H 0.120 0.880 45 H 0.128 0.872 46 H 0.122 0.878 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -26.592 -1.576 -0.550 26.645 hybrid contribution 1.323 -1.261 0.039 1.829 sum -25.269 -2.837 -0.510 25.433 Atomic orbital electron populations 1.21811 0.73835 1.04516 1.03191 1.48033 1.06358 1.02793 1.57748 1.77455 1.01286 1.07524 1.24383 1.24538 0.95649 0.93214 0.99650 1.17388 0.85416 0.91099 1.15917 1.42507 1.02633 1.10468 1.70618 1.20529 0.84471 0.88485 0.77569 1.90641 1.86260 1.14337 1.47165 1.19685 0.84662 0.87888 0.79785 1.90734 1.86605 1.13902 1.49986 1.46211 1.04995 1.12488 1.69173 1.21971 0.82854 0.93416 1.01146 1.18377 0.90172 0.92792 0.93110 1.21860 1.00478 0.99400 0.97437 1.21862 1.00491 0.99408 0.97418 1.20902 0.89778 0.92618 1.51357 0.92399 1.24881 0.98855 0.95003 0.94737 1.69789 1.23264 1.09016 1.50159 0.86618 0.82130 0.80357 0.78649 1.20281 1.21333 1.20281 1.19382 0.89298 0.89058 1.07116 1.20445 1.07017 0.88533 0.96492 1.23122 0.96409 0.99495 1.01119 1.23016 0.95301 1.03368 0.98548 0.90835 0.89649 0.89081 0.77418 0.74121 0.75068 0.91895 0.91896 0.97226 0.89429 0.95331 0.95332 0.89431 0.97218 0.92864 0.85677 0.88025 0.87180 0.87801 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.61 11.22 59.85 0.67 1.29 16 2 N -0.37 -3.78 4.02 -63.68 -0.26 -4.04 16 3 N -0.28 -3.80 12.56 30.72 0.39 -3.41 16 4 C 0.06 0.78 10.84 -17.19 -0.19 0.60 16 5 C 0.01 0.08 6.78 -83.95 -0.57 -0.49 16 6 N -0.61 -7.94 5.33 -10.48 -0.06 -8.00 16 7 C 0.51 7.78 7.86 -11.64 -0.09 7.69 16 8 O -0.51 -8.45 13.63 5.45 0.07 -8.38 16 9 C 0.50 8.56 7.88 -11.64 -0.09 8.47 16 10 O -0.53 -9.86 16.47 5.49 0.09 -9.77 16 11 N -0.68 -12.25 4.95 -60.77 -0.30 -12.56 16 12 C 0.13 2.62 4.50 -4.04 -0.02 2.60 16 13 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 14 C -0.13 -3.03 8.08 37.15 0.30 -2.73 16 15 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 16 C -0.51 -13.04 8.01 -34.44 -0.28 -13.31 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 19 N -0.88 -23.45 9.35 55.43 0.52 -22.93 16 20 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.08 0.84 6.42 -81.96 -0.53 0.31 16 25 C -0.11 -0.74 5.56 -91.77 -0.51 -1.25 16 26 C -0.16 -1.09 8.94 -26.69 -0.24 -1.32 16 27 C -0.17 -0.89 10.24 -26.69 -0.27 -1.16 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.31 7.94 -51.93 -0.41 -0.10 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.21 3.02 5.92 -52.49 -0.31 2.71 16 32 H 0.42 4.81 6.59 -40.82 -0.27 4.54 16 33 H 0.41 7.32 5.63 -40.82 -0.23 7.09 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 37 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 41 H 0.01 0.18 6.86 -51.93 -0.36 -0.17 16 42 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 43 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.10 0.82 7.81 -51.93 -0.41 0.42 16 45 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -29.68 384.47 -7.19 -36.87 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.74 Total: 10.15 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.68 Total: 0.81 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.29 Total: -50.93 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.16 Total: -18.15 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.68 -7.19 -36.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873913982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.348 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds