Wall clock time and date at job start Tue Mar 31 2020 18:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40052 * 125.99285 * 2 1 4 4 C 1.30823 * 108.36711 * 180.02562 * 3 2 1 5 5 C 1.40344 * 108.20617 * 0.02562 * 4 3 2 6 6 N 1.40484 * 126.11567 * 179.73684 * 5 4 3 7 7 C 1.34775 * 119.99870 * 0.02562 * 6 5 4 8 8 O 1.21407 * 120.00354 * 0.02562 * 7 6 5 9 9 C 1.49328 * 120.00132 * 180.02562 * 7 6 5 10 10 O 1.21357 * 119.99768 * 0.02562 * 9 7 6 11 11 N 1.34775 * 120.00132 * 179.97438 * 9 7 6 12 12 C 1.46498 * 120.00196 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47346 * 180.02562 * 12 11 9 14 14 C 1.52993 * 109.47153 * 299.99749 * 13 12 11 15 15 C 1.52998 * 109.47057 * 60.00003 * 13 12 11 16 16 C 1.50699 * 109.46978 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00217 * 0.02562 * 16 13 12 18 18 C 1.37877 * 119.99648 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00555 * 0.02562 * 18 16 13 20 20 Si 1.86810 * 119.99800 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.46898 * 60.00444 * 20 18 16 22 22 H 1.48497 * 109.46900 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47224 * 300.00565 * 20 18 16 24 24 C 1.35218 * 125.99378 * 180.02562 * 2 1 3 25 25 C 1.50701 * 126.17899 * 0.02562 * 24 2 1 26 26 C 1.52998 * 117.49826 * 132.45143 * 25 24 2 27 27 C 1.52999 * 117.49982 * 63.78967 * 25 24 2 28 28 H 1.08999 * 109.47310 * 95.17545 * 1 2 3 29 29 H 1.08998 * 109.47258 * 215.17605 * 1 2 3 30 30 H 1.09000 * 109.46992 * 335.17558 * 1 2 3 31 31 H 1.07995 * 125.90207 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00244 * 180.02562 * 6 5 4 33 33 H 0.97006 * 119.99777 * 359.97438 * 11 9 7 34 34 H 1.09001 * 109.46664 * 299.99989 * 12 11 9 35 35 H 1.08996 * 109.47179 * 59.99566 * 12 11 9 36 36 H 1.09000 * 109.47251 * 59.99893 * 14 13 12 37 37 H 1.08997 * 109.47372 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.47592 * 300.00249 * 14 13 12 39 39 H 1.09001 * 109.47438 * 59.99766 * 15 13 12 40 40 H 1.08999 * 109.47461 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47290 * 299.99958 * 15 13 12 42 42 H 0.96995 * 120.00899 * 180.02562 * 19 18 16 43 43 H 1.08999 * 115.54897 * 278.11906 * 25 24 2 44 44 H 1.09002 * 117.50080 * 359.97438 * 26 25 24 45 45 H 1.09007 * 117.49833 * 145.02329 * 26 25 24 46 46 H 1.08997 * 117.50032 * 214.97962 * 27 25 24 47 47 H 1.08999 * 117.49907 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2881 1.1331 0.0000 4 6 3.5349 0.7370 -0.0006 5 6 3.5491 -0.6664 -0.0015 6 7 4.6923 -1.4828 -0.0076 7 6 5.9190 -0.9247 -0.0126 8 8 6.0362 0.2837 -0.0114 9 6 7.1342 -1.7925 -0.0196 10 8 7.0172 -3.0004 -0.0212 11 7 8.3609 -1.2343 -0.0251 12 6 9.5531 -2.0857 -0.0326 13 6 10.8065 -1.2082 -0.0371 14 6 10.8045 -0.3227 -1.2847 15 6 10.8168 -0.3272 1.2137 16 6 12.0328 -2.0841 -0.0441 17 1 11.9286 -3.1591 -0.0456 18 6 13.2877 -1.5130 -0.0497 19 7 13.4146 -0.2041 -0.0484 20 14 14.8079 -2.5988 -0.0577 21 1 14.7981 -3.4552 -1.2708 22 1 16.0244 -1.7471 -0.0622 23 1 14.8096 -3.4570 1.1541 24 6 2.2597 -1.0940 -0.0005 25 6 1.7983 -2.5287 -0.0017 26 6 2.4544 -3.4809 -1.0035 27 6 1.0119 -3.0168 -1.2199 28 1 -0.3634 -0.0927 -1.0235 29 1 -0.3634 -0.8400 0.5920 30 1 -0.3633 0.9327 0.4315 31 1 4.4033 1.3790 -0.0011 32 1 4.5988 -2.4483 -0.0081 33 1 8.4544 -0.2688 -0.0250 34 1 9.5547 -2.7163 0.8565 35 1 9.5455 -2.7138 -0.9234 36 1 9.9175 0.3108 -1.2793 37 1 11.6972 0.3027 -1.2878 38 1 10.7972 -0.9504 -2.1759 39 1 10.8182 -0.9581 2.1025 40 1 11.7099 0.2976 1.2107 41 1 9.9298 0.3063 1.2192 42 1 14.2974 0.1977 -0.0527 43 1 1.5218 -2.9344 0.9715 44 1 3.2195 -3.0696 -1.6620 45 1 2.6092 -4.5132 -0.6895 46 1 0.2182 -3.7440 -1.0483 47 1 0.8278 -2.3002 -2.0203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873913982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:00 Heat of formation + Delta-G solvation = 18.679525 kcal Electronic energy + Delta-G solvation = -28673.242747 eV Core-core repulsion = 24665.317680 eV Total energy + Delta-G solvation = -4007.925067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.76379 -41.54049 -39.71729 -38.20487 -38.00985 -36.24920 -34.96181 -33.70928 -32.74012 -30.68640 -28.29629 -27.57042 -27.43194 -27.00823 -25.14177 -24.19081 -23.48196 -22.47837 -21.16958 -21.01413 -20.64647 -19.29218 -18.38347 -17.90770 -17.55486 -17.18404 -16.92055 -16.65767 -16.47937 -16.12774 -15.74161 -15.48685 -15.29593 -15.08353 -14.81054 -14.75250 -14.40068 -14.03210 -13.70229 -13.52700 -13.19528 -13.10653 -12.98336 -12.66893 -12.66783 -12.59083 -12.42426 -12.25771 -12.10622 -12.07822 -12.01266 -11.60299 -11.48905 -11.29203 -11.26936 -10.76340 -10.64226 -10.39181 -10.30988 -10.12719 -8.84612 -7.99617 -6.16173 0.12045 0.75411 1.13120 1.47402 1.48397 1.54243 1.57159 1.58913 2.23099 2.46417 2.63866 2.76387 3.24231 3.36341 3.40588 3.62914 3.88191 3.91019 4.16462 4.33762 4.35524 4.38446 4.44765 4.49571 4.67342 4.69701 4.70479 4.77424 4.88574 4.94398 4.97835 5.05853 5.07149 5.08737 5.19163 5.21810 5.22454 5.49561 5.59378 5.66456 5.69189 5.90722 5.95541 6.12997 6.20557 6.33546 6.42702 6.54134 6.72833 6.87214 6.93670 7.51728 8.99389 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026887 B = 0.002250 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.152300 B =12443.741429 C =13215.591014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.358 5.358 3 N -0.311 5.311 4 C 0.038 3.962 5 C -0.029 4.029 6 N -0.596 5.596 7 C 0.509 3.491 8 O -0.527 6.527 9 C 0.506 3.494 10 O -0.546 6.546 11 N -0.678 5.678 12 C 0.143 3.857 13 C 0.050 3.950 14 C -0.125 4.125 15 C -0.125 4.125 16 C -0.525 4.525 17 H 0.053 0.947 18 C 0.026 3.974 19 N -0.901 5.901 20 Si 0.948 3.052 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.103 3.897 25 C -0.114 4.114 26 C -0.174 4.174 27 C -0.144 4.144 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.195 0.805 32 H 0.428 0.572 33 H 0.414 0.586 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.030 0.970 37 H 0.063 0.937 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.063 0.937 41 H 0.030 0.970 42 H 0.260 0.740 43 H 0.147 0.853 44 H 0.082 0.918 45 H 0.125 0.875 46 H 0.131 0.869 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.587 -4.245 -0.510 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.141 5.141 3 N -0.133 5.133 4 C -0.148 4.148 5 C -0.133 4.133 6 N -0.244 5.244 7 C 0.291 3.709 8 O -0.403 6.403 9 C 0.286 3.714 10 O -0.425 6.425 11 N -0.330 5.330 12 C 0.020 3.980 13 C 0.050 3.950 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.564 4.564 17 H 0.071 0.929 18 C -0.174 4.174 19 N -0.540 5.540 20 Si 0.775 3.225 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.028 4.028 25 C -0.133 4.133 26 C -0.211 4.211 27 C -0.181 4.181 28 H 0.110 0.890 29 H 0.132 0.868 30 H 0.115 0.885 31 H 0.211 0.789 32 H 0.267 0.733 33 H 0.252 0.748 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.164 0.836 44 H 0.101 0.899 45 H 0.144 0.856 46 H 0.149 0.851 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -29.327 -3.078 -0.508 29.493 hybrid contribution 1.970 -0.814 0.009 2.131 sum -27.358 -3.893 -0.499 27.638 Atomic orbital electron populations 1.22277 0.71046 1.06159 1.05054 1.48501 1.07846 1.02025 1.55725 1.77390 1.01385 1.09065 1.25492 1.24387 0.95745 0.93894 1.00745 1.17551 0.86174 0.90741 1.18815 1.42299 1.02015 1.10802 1.69237 1.20087 0.84586 0.87922 0.78339 1.90650 1.86398 1.14717 1.48510 1.19913 0.84832 0.87847 0.78769 1.90721 1.86867 1.14574 1.50339 1.46041 1.04830 1.12277 1.69855 1.21581 0.82840 0.92929 1.00604 1.18377 0.90517 0.92895 0.93237 1.21714 1.00242 0.99142 0.97162 1.21716 1.00256 0.99150 0.97144 1.21214 0.91095 0.92806 1.51267 0.92898 1.25505 1.01157 0.96035 0.94728 1.69917 1.23495 1.09990 1.50595 0.85773 0.79311 0.78908 0.78544 1.20058 1.21264 1.20073 1.19891 0.88407 0.90641 1.03869 1.20613 1.08224 0.86295 0.98169 1.23183 0.97030 1.00067 1.00837 1.23110 0.95116 1.03012 0.96858 0.89018 0.86792 0.88537 0.78898 0.73265 0.74806 0.92465 0.92451 0.95138 0.91856 0.95703 0.95712 0.91857 0.95130 0.93089 0.83579 0.89938 0.85636 0.85103 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 11.22 127.77 1.43 2.22 16 2 N -0.36 -6.75 4.02 -355.40 -1.43 -8.17 16 3 N -0.31 -8.20 12.56 -56.72 -0.71 -8.91 16 4 C 0.04 1.07 10.84 85.36 0.93 2.00 16 5 C -0.03 -0.72 6.78 37.71 0.26 -0.46 16 6 N -0.60 -15.13 5.33 -305.41 -1.63 -16.76 16 7 C 0.51 15.60 7.86 87.23 0.69 16.28 16 8 O -0.53 -17.74 13.63 -3.43 -0.05 -17.79 16 9 C 0.51 17.13 7.88 87.23 0.69 17.82 16 10 O -0.55 -19.83 16.47 -3.27 -0.05 -19.88 16 11 N -0.68 -24.33 4.95 -464.55 -2.30 -26.63 16 12 C 0.14 5.84 4.50 86.38 0.39 6.23 16 13 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 14 C -0.12 -5.67 8.08 71.98 0.58 -5.08 16 15 C -0.12 -5.67 8.08 71.98 0.58 -5.09 16 16 C -0.53 -27.13 8.01 25.60 0.21 -26.92 16 17 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 18 C 0.03 1.33 5.15 84.66 0.44 1.77 16 19 N -0.90 -48.40 9.35 21.45 0.20 -48.20 16 20 Si 0.95 42.13 29.54 68.60 2.03 44.15 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 24 C 0.10 1.95 6.42 41.48 0.27 2.21 16 25 C -0.11 -1.23 5.56 -11.54 -0.06 -1.29 16 26 C -0.17 -1.85 8.94 30.62 0.27 -1.58 16 27 C -0.14 -1.01 10.24 30.62 0.31 -0.70 16 28 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.11 0.34 7.94 -2.39 -0.02 0.32 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.19 5.94 5.92 -2.91 -0.02 5.92 16 32 H 0.43 9.38 6.59 -92.71 -0.61 8.77 16 33 H 0.41 14.54 5.63 -92.70 -0.52 14.02 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 37 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 38 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 41 H 0.03 1.21 6.86 -2.39 -0.02 1.20 16 42 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 43 H 0.15 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.08 1.23 7.81 -2.39 -0.02 1.21 16 45 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -64.47 384.47 2.88 -61.59 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -0.12 Total: 30.91 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.94 Total: 9.69 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -5.87 Total: -108.67 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.10 Total: -37.67 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -64.47 2.88 -61.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873913982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.267 kcal (2) G-P(sol) polarization free energy of solvation -64.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds