Wall clock time and date at job start Tue Mar 31 2020 17:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 119.99807 * 2 1 4 4 C 1.53006 * 109.47356 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.47322 * 239.99951 * 3 2 1 6 6 C 1.53004 * 109.47257 * 119.99924 * 3 2 1 7 7 C 1.52996 * 109.47463 * 180.02562 * 6 3 2 8 8 C 1.53000 * 109.47123 * 179.97438 * 7 6 3 9 9 N 1.46505 * 109.47069 * 179.97438 * 8 7 6 10 10 C 1.34772 * 119.99990 * 179.97438 * 9 8 7 11 11 O 1.21359 * 120.00226 * 0.02562 * 10 9 8 12 12 C 1.49308 * 119.99928 * 179.97438 * 10 9 8 13 13 O 1.21403 * 119.99901 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00276 * 180.02562 * 12 10 9 15 15 C 1.40286 * 120.00387 * 180.02562 * 14 12 10 16 16 C 1.40721 * 126.09820 * 359.95366 * 15 14 12 17 17 N 1.30877 * 108.37690 * 179.79326 * 16 15 14 18 18 N 1.40061 * 108.43327 * 0.38408 * 17 16 15 19 19 C 1.37293 * 126.05371 * 179.87288 * 18 17 16 20 20 H 1.07999 * 120.00325 * 173.76022 * 19 18 17 21 21 C 1.39009 * 120.00141 * 354.03938 * 19 18 17 22 22 N 1.31274 * 120.00094 * 5.58291 * 21 19 18 23 23 Si 1.86802 * 120.00082 * 185.57849 * 21 19 18 24 24 H 1.48497 * 109.47065 * 94.97773 * 23 21 19 25 25 H 1.48495 * 109.47224 * 214.98268 * 23 21 19 26 26 H 1.48506 * 109.47153 * 334.98084 * 23 21 19 27 27 C 1.35787 * 126.10217 * 180.02562 * 15 14 12 28 28 H 1.07994 * 120.00387 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99695 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.99988 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47025 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46444 * 299.99989 * 4 3 2 33 33 H 1.09001 * 109.46952 * 59.99787 * 4 3 2 34 34 H 1.09006 * 109.47148 * 300.00117 * 5 3 2 35 35 H 1.09000 * 109.47250 * 59.99537 * 5 3 2 36 36 H 1.08997 * 109.47357 * 180.02562 * 5 3 2 37 37 H 1.08998 * 109.47064 * 59.99812 * 6 3 2 38 38 H 1.09001 * 109.47107 * 300.00247 * 6 3 2 39 39 H 1.08998 * 109.47176 * 59.99829 * 7 6 3 40 40 H 1.09001 * 109.47119 * 300.00188 * 7 6 3 41 41 H 1.08998 * 109.47220 * 59.99873 * 8 7 6 42 42 H 1.08992 * 109.47177 * 299.99490 * 8 7 6 43 43 H 0.96997 * 119.99535 * 0.02562 * 9 8 7 44 44 H 0.97001 * 119.99593 * 0.02562 * 14 12 10 45 45 H 1.08006 * 125.81655 * 0.02562 * 16 15 14 46 46 H 0.96999 * 120.00193 * 180.02562 * 22 21 19 47 47 H 1.07997 * 126.25020 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9431 1.3862 1.2493 7 6 3.7076 2.7115 1.2496 8 6 4.5867 2.7928 2.4992 9 7 5.3192 4.0616 2.4993 10 6 6.1607 4.3538 3.5106 11 8 6.3120 3.5658 4.4210 12 6 6.9076 5.6466 3.5103 13 8 6.7566 6.4348 2.5993 14 7 7.7496 5.9387 4.5214 15 6 8.4510 7.1537 4.5215 16 6 8.3743 8.1553 3.5361 17 7 9.1663 9.1375 3.8836 18 7 9.7845 8.8007 5.0944 19 6 10.6878 9.5724 5.7825 20 1 11.0292 9.2627 6.7592 21 6 11.1587 10.7554 5.2247 22 7 10.6594 11.1910 4.0914 23 14 12.5018 11.7253 6.0877 24 1 13.8236 11.3485 5.5255 25 1 12.2727 13.1781 5.8830 26 1 12.4769 11.4202 7.5409 27 6 9.3261 7.5723 5.4716 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.6142 3.4120 0.0011 32 1 0.4422 2.4104 -0.8891 33 1 0.4429 2.4101 0.8909 34 1 3.6515 0.5577 -1.2492 35 1 2.3165 1.3284 -2.1392 36 1 3.4884 2.3300 -1.2490 37 1 3.6514 0.5577 1.2493 38 1 2.3164 1.3284 2.1393 39 1 2.9990 3.5397 1.2498 40 1 4.3342 2.7697 0.3597 41 1 5.2953 1.9646 2.4995 42 1 3.9597 2.7349 3.3889 43 1 5.1979 4.6916 1.7718 44 1 7.8705 5.3089 5.2491 45 1 7.7627 8.1213 2.6464 46 1 10.9882 12.0163 3.7020 47 1 9.6077 7.0316 6.3631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874292895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:19 Heat of formation + Delta-G solvation = 19.983524 kcal Electronic energy + Delta-G solvation = -27213.512498 eV Core-core repulsion = 23205.643976 eV Total energy + Delta-G solvation = -4007.868521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.49322 -39.54511 -38.96011 -37.91235 -35.70977 -34.31950 -33.21541 -32.68230 -30.42014 -30.30266 -28.11075 -27.75206 -26.85145 -25.27294 -24.10166 -22.75811 -21.22543 -21.02725 -20.16813 -19.46219 -18.45703 -18.15891 -17.43954 -16.47964 -16.20085 -16.11912 -15.53475 -15.32519 -15.15860 -15.10639 -14.64351 -14.40927 -14.03544 -13.92435 -13.51483 -13.37012 -13.02366 -12.99280 -12.71901 -12.52463 -12.40521 -12.10795 -11.87115 -11.75119 -11.58208 -11.34692 -11.32022 -11.23847 -11.17029 -10.89799 -10.85324 -10.76953 -10.55122 -10.28794 -9.72888 -9.29313 -9.23622 -9.12740 -8.87974 -8.13273 -6.78458 -6.61444 -4.28470 1.65888 1.91317 2.60739 2.92992 3.03730 3.08839 3.32907 3.71400 3.75296 3.96629 4.25752 4.33599 4.36548 4.43284 4.60239 4.68977 4.77961 4.94363 4.96670 4.98221 5.01212 5.07208 5.23614 5.28651 5.35433 5.39796 5.45944 5.51975 5.63860 5.69851 5.74609 5.78217 5.96828 5.99994 6.18530 6.20085 6.25374 6.35825 6.42124 6.75271 6.88832 6.91364 7.15755 7.21842 7.76089 7.85730 8.10000 8.17989 8.48334 8.69005 9.30911 9.59250 10.34647 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.039873 B = 0.001597 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.054356 B =17531.029970 C =17984.002324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.039 4.039 4 C -0.148 4.148 5 C -0.142 4.142 6 C -0.101 4.101 7 C -0.138 4.138 8 C 0.118 3.882 9 N -0.705 5.705 10 C 0.514 3.486 11 O -0.529 6.529 12 C 0.483 3.517 13 O -0.524 6.524 14 N -0.583 5.583 15 C -0.070 4.070 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.323 4.323 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.263 1.263 27 C -0.076 4.076 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.413 0.587 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.399 -18.502 -6.721 24.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.160 4.160 3 C -0.039 4.039 4 C -0.205 4.205 5 C -0.199 4.199 6 C -0.139 4.139 7 C -0.175 4.175 8 C -0.005 4.005 9 N -0.359 5.359 10 C 0.296 3.704 11 O -0.405 6.405 12 C 0.264 3.736 13 O -0.401 6.401 14 N -0.226 5.226 15 C -0.176 4.176 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.095 4.905 19 C -0.455 4.455 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.393 5.393 23 Si 0.759 3.241 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.228 4.228 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.250 0.750 44 H 0.244 0.756 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.932 -17.160 -7.186 23.855 hybrid contribution 0.219 -0.614 0.683 0.944 sum -14.713 -17.774 -6.503 23.973 Atomic orbital electron populations 1.24008 0.96208 1.02065 1.01392 1.22923 0.95869 0.97692 0.99566 1.19672 0.95264 0.93248 0.95693 1.22039 0.98878 0.97800 1.01830 1.21895 0.99246 1.02282 0.96453 1.21481 0.98097 0.96974 0.97337 1.21968 0.98929 0.98968 0.97652 1.21452 0.94792 0.85480 0.98812 1.45725 1.43627 1.21327 1.25226 1.20286 0.80308 0.87400 0.82449 1.90730 1.64303 1.50038 1.35450 1.19663 0.82599 0.87297 0.84034 1.90652 1.64644 1.49200 1.35635 1.42148 1.39333 1.18233 1.22875 1.17266 1.07906 0.90425 1.02014 1.24141 1.03004 0.92185 1.00850 1.78254 1.12096 1.20661 0.98190 1.44560 1.23841 1.08848 1.13274 1.19939 1.19552 1.03758 1.02289 0.86414 1.25665 0.98249 0.97148 0.95990 1.70209 1.35112 1.18995 1.15033 0.85791 0.79911 0.78681 0.79670 1.19578 1.20052 1.18709 1.21312 1.06715 0.92056 1.02690 0.87878 0.88798 0.87535 0.91875 0.92463 0.92308 0.92467 0.92670 0.91818 0.91351 0.91392 0.90590 0.90556 0.91124 0.91129 0.75037 0.75585 0.80559 0.91361 0.83325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.15 13.70 29.01 0.40 -0.76 16 2 C -0.14 -0.85 8.76 -36.03 -0.32 -1.17 16 3 C -0.04 -0.22 0.77 -155.66 -0.12 -0.34 16 4 C -0.15 -0.84 6.77 37.16 0.25 -0.59 16 5 C -0.14 -0.80 8.11 37.16 0.30 -0.50 16 6 C -0.10 -0.59 4.25 -26.73 -0.11 -0.71 16 7 C -0.14 -0.88 4.62 -26.73 -0.12 -1.01 16 8 C 0.12 1.06 5.67 -4.04 -0.02 1.03 16 9 N -0.71 -8.16 5.55 -60.78 -0.34 -8.50 16 10 C 0.51 7.80 7.88 -11.65 -0.09 7.70 16 11 O -0.53 -8.81 16.47 5.49 0.09 -8.72 16 12 C 0.48 8.75 7.85 -11.65 -0.09 8.66 16 13 O -0.52 -10.55 13.62 5.45 0.07 -10.47 16 14 N -0.58 -11.07 5.45 -10.46 -0.06 -11.13 16 15 C -0.07 -1.63 6.90 -83.93 -0.58 -2.21 16 16 C -0.03 -0.67 10.84 -17.02 -0.18 -0.86 16 17 N -0.26 -7.50 10.41 30.81 0.32 -7.18 16 18 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 19 C -0.32 -8.46 10.24 -14.82 -0.15 -8.61 16 20 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 21 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 22 N -0.77 -21.13 11.83 55.50 0.66 -20.47 16 23 Si 0.94 18.68 29.56 -169.99 -5.02 13.65 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 25 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 26 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 27 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 28 H 0.10 0.56 5.69 -52.49 -0.30 0.26 16 29 H 0.09 0.47 8.06 -52.48 -0.42 0.05 16 30 H 0.11 0.59 8.06 -52.48 -0.42 0.16 16 31 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 32 H 0.06 0.32 7.49 -51.93 -0.39 -0.07 16 33 H 0.06 0.33 7.50 -51.93 -0.39 -0.05 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.47 6.43 -51.93 -0.33 0.14 16 40 H 0.08 0.47 6.43 -51.93 -0.33 0.14 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.41 4.37 7.94 -40.82 -0.32 4.05 16 44 H 0.41 6.71 8.29 -40.82 -0.34 6.37 16 45 H 0.18 4.43 5.92 -52.48 -0.31 4.12 16 46 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -32.41 389.03 -6.32 -38.73 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -6.74 Total: 12.26 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -1.13 Total: -0.23 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.54 Total: -51.08 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.16 Total: -19.19 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.41 -6.32 -38.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874292895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.713 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds