Wall clock time and date at job start Tue Mar 31 2020 17:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 119.99807 * 2 1 4 4 C 1.53006 * 109.47356 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.47322 * 239.99951 * 3 2 1 6 6 C 1.53004 * 109.47257 * 119.99924 * 3 2 1 7 7 C 1.52996 * 109.47463 * 180.02562 * 6 3 2 8 8 C 1.53000 * 109.47123 * 179.97438 * 7 6 3 9 9 N 1.46505 * 109.47069 * 179.97438 * 8 7 6 10 10 C 1.34772 * 119.99990 * 179.97438 * 9 8 7 11 11 O 1.21359 * 120.00226 * 0.02562 * 10 9 8 12 12 C 1.49308 * 119.99928 * 179.97438 * 10 9 8 13 13 O 1.21403 * 119.99901 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00276 * 180.02562 * 12 10 9 15 15 C 1.40286 * 120.00387 * 180.02562 * 14 12 10 16 16 C 1.40721 * 126.09820 * 359.95366 * 15 14 12 17 17 N 1.30877 * 108.37690 * 179.79326 * 16 15 14 18 18 N 1.40061 * 108.43327 * 0.38408 * 17 16 15 19 19 C 1.37293 * 126.05371 * 179.87288 * 18 17 16 20 20 H 1.07999 * 120.00325 * 173.76022 * 19 18 17 21 21 C 1.39009 * 120.00141 * 354.03938 * 19 18 17 22 22 N 1.31274 * 120.00094 * 5.58291 * 21 19 18 23 23 Si 1.86802 * 120.00082 * 185.57849 * 21 19 18 24 24 H 1.48497 * 109.47065 * 94.97773 * 23 21 19 25 25 H 1.48495 * 109.47224 * 214.98268 * 23 21 19 26 26 H 1.48506 * 109.47153 * 334.98084 * 23 21 19 27 27 C 1.35787 * 126.10217 * 180.02562 * 15 14 12 28 28 H 1.07994 * 120.00387 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99695 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.99988 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47025 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46444 * 299.99989 * 4 3 2 33 33 H 1.09001 * 109.46952 * 59.99787 * 4 3 2 34 34 H 1.09006 * 109.47148 * 300.00117 * 5 3 2 35 35 H 1.09000 * 109.47250 * 59.99537 * 5 3 2 36 36 H 1.08997 * 109.47357 * 180.02562 * 5 3 2 37 37 H 1.08998 * 109.47064 * 59.99812 * 6 3 2 38 38 H 1.09001 * 109.47107 * 300.00247 * 6 3 2 39 39 H 1.08998 * 109.47176 * 59.99829 * 7 6 3 40 40 H 1.09001 * 109.47119 * 300.00188 * 7 6 3 41 41 H 1.08998 * 109.47220 * 59.99873 * 8 7 6 42 42 H 1.08992 * 109.47177 * 299.99490 * 8 7 6 43 43 H 0.96997 * 119.99535 * 0.02562 * 9 8 7 44 44 H 0.97001 * 119.99593 * 0.02562 * 14 12 10 45 45 H 1.08006 * 125.81655 * 0.02562 * 16 15 14 46 46 H 0.96999 * 120.00193 * 180.02562 * 22 21 19 47 47 H 1.07997 * 126.25020 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9431 1.3862 1.2493 7 6 3.7076 2.7115 1.2496 8 6 4.5867 2.7928 2.4992 9 7 5.3192 4.0616 2.4993 10 6 6.1607 4.3538 3.5106 11 8 6.3120 3.5658 4.4210 12 6 6.9076 5.6466 3.5103 13 8 6.7566 6.4348 2.5993 14 7 7.7496 5.9387 4.5214 15 6 8.4510 7.1537 4.5215 16 6 8.3743 8.1553 3.5361 17 7 9.1663 9.1375 3.8836 18 7 9.7845 8.8007 5.0944 19 6 10.6878 9.5724 5.7825 20 1 11.0292 9.2627 6.7592 21 6 11.1587 10.7554 5.2247 22 7 10.6594 11.1910 4.0914 23 14 12.5018 11.7253 6.0877 24 1 13.8236 11.3485 5.5255 25 1 12.2727 13.1781 5.8830 26 1 12.4769 11.4202 7.5409 27 6 9.3261 7.5723 5.4716 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.6142 3.4120 0.0011 32 1 0.4422 2.4104 -0.8891 33 1 0.4429 2.4101 0.8909 34 1 3.6515 0.5577 -1.2492 35 1 2.3165 1.3284 -2.1392 36 1 3.4884 2.3300 -1.2490 37 1 3.6514 0.5577 1.2493 38 1 2.3164 1.3284 2.1393 39 1 2.9990 3.5397 1.2498 40 1 4.3342 2.7697 0.3597 41 1 5.2953 1.9646 2.4995 42 1 3.9597 2.7349 3.3889 43 1 5.1979 4.6916 1.7718 44 1 7.8705 5.3089 5.2491 45 1 7.7627 8.1213 2.6464 46 1 10.9882 12.0163 3.7020 47 1 9.6077 7.0316 6.3631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874292895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:17 Heat of formation + Delta-G solvation = -1.529778 kcal Electronic energy + Delta-G solvation = -27214.445384 eV Core-core repulsion = 23205.643976 eV Total energy + Delta-G solvation = -4008.801408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.01921 -41.16404 -39.65558 -39.23394 -36.75003 -35.90182 -34.97957 -33.40053 -32.29714 -30.99218 -29.89297 -28.19256 -27.79673 -26.87973 -25.26663 -23.66846 -22.87497 -21.96070 -21.49038 -21.12814 -19.61537 -19.11665 -18.91520 -17.66477 -17.45203 -17.18275 -16.86997 -16.69412 -16.31874 -16.16805 -15.66769 -15.49895 -15.14797 -15.11941 -14.88358 -14.73286 -14.62810 -13.92672 -13.52155 -13.38577 -13.27205 -13.05612 -13.01021 -12.98982 -12.86073 -12.61475 -12.49832 -12.36649 -12.06432 -11.96718 -11.82397 -11.68079 -11.34976 -11.26929 -11.07683 -10.86926 -10.58065 -10.28694 -10.16660 -10.13975 -8.62409 -8.49365 -6.26881 0.29129 1.29534 1.30940 1.42417 1.48693 1.59506 1.72618 2.04632 2.12297 2.53666 2.59769 2.95012 3.06790 3.53899 3.73620 3.84287 3.93987 4.14014 4.26711 4.39690 4.43261 4.51619 4.52750 4.55466 4.69043 4.71495 4.85829 4.90199 4.95027 4.96160 4.98621 5.07162 5.13093 5.19398 5.20727 5.22039 5.26229 5.30587 5.32526 5.50976 5.54113 5.81834 5.90521 5.97986 6.01697 6.25385 6.49241 6.67499 6.81318 7.07499 7.41367 7.62694 8.50169 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.039873 B = 0.001597 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.054356 B =17531.029970 C =17984.002324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.037 4.037 4 C -0.149 4.149 5 C -0.142 4.142 6 C -0.097 4.097 7 C -0.129 4.129 8 C 0.116 3.884 9 N -0.688 5.688 10 C 0.523 3.477 11 O -0.543 6.543 12 C 0.485 3.515 13 O -0.543 6.543 14 N -0.583 5.583 15 C -0.058 4.058 16 C -0.047 4.047 17 N -0.309 5.309 18 N -0.163 5.163 19 C -0.355 4.355 20 H 0.142 0.858 21 C -0.004 4.004 22 N -0.821 5.821 23 Si 1.019 2.981 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.244 1.244 27 C -0.074 4.074 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.419 0.581 44 H 0.423 0.577 45 H 0.176 0.824 46 H 0.278 0.722 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.536 -19.951 -5.817 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.168 4.168 3 C -0.037 4.037 4 C -0.206 4.206 5 C -0.199 4.199 6 C -0.135 4.135 7 C -0.166 4.166 8 C -0.006 4.006 9 N -0.340 5.340 10 C 0.303 3.697 11 O -0.421 6.421 12 C 0.267 3.733 13 O -0.422 6.422 14 N -0.228 5.228 15 C -0.165 4.165 16 C -0.223 4.223 17 N -0.140 5.140 18 N 0.069 4.931 19 C -0.486 4.486 20 H 0.159 0.841 21 C -0.216 4.216 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.166 1.166 27 C -0.225 4.225 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.257 0.743 44 H 0.261 0.739 45 H 0.193 0.807 46 H 0.088 0.912 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -15.112 -18.661 -6.292 24.823 hybrid contribution 0.095 -0.332 0.322 0.472 sum -15.017 -18.993 -5.970 24.938 Atomic orbital electron populations 1.24128 0.96309 1.02502 1.01098 1.23015 0.96049 0.97933 0.99839 1.19653 0.95226 0.93238 0.95602 1.22040 0.98896 0.97792 1.01827 1.21895 0.99235 1.02404 0.96334 1.21443 0.98064 0.96619 0.97390 1.21915 0.98648 0.99545 0.96507 1.21667 0.94843 0.83908 1.00167 1.45769 1.42095 1.22188 1.23983 1.19647 0.80828 0.85937 0.83300 1.90736 1.65122 1.49951 1.36246 1.20317 0.81805 0.88119 0.83036 1.90643 1.64997 1.50240 1.36293 1.42092 1.39473 1.17234 1.23960 1.17316 1.07283 0.91147 1.00723 1.24249 1.03294 0.93008 1.01702 1.78150 1.13559 1.22447 0.99882 1.44835 1.24760 1.10212 1.13304 1.20670 1.19919 1.04552 1.03472 0.84114 1.26874 1.00378 0.97890 0.96436 1.70373 1.37292 1.19870 1.17273 0.84573 0.75978 0.76447 0.79195 1.19152 1.20036 1.16643 1.22009 1.05676 0.91178 1.03612 0.87731 0.88196 0.87180 0.91794 0.92458 0.92367 0.92317 0.92870 0.91689 0.91026 0.91461 0.90129 0.89969 0.90921 0.91028 0.74317 0.73917 0.80694 0.91218 0.79494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.10 13.70 67.78 0.93 -1.17 16 2 C -0.15 -1.59 8.76 25.64 0.22 -1.36 16 3 C -0.04 -0.37 0.77 -52.93 -0.04 -0.41 16 4 C -0.15 -1.47 6.77 71.98 0.49 -0.99 16 5 C -0.14 -1.39 8.11 71.98 0.58 -0.81 16 6 C -0.10 -0.95 4.25 30.59 0.13 -0.82 16 7 C -0.13 -1.37 4.62 30.59 0.14 -1.23 16 8 C 0.12 1.83 5.67 86.38 0.49 2.32 16 9 N -0.69 -14.59 5.55 -464.57 -2.58 -17.17 16 10 C 0.52 14.98 7.88 87.23 0.69 15.67 16 11 O -0.54 -17.04 16.47 -3.27 -0.05 -17.09 16 12 C 0.49 17.13 7.85 87.23 0.69 17.82 16 13 O -0.54 -21.75 13.62 -3.41 -0.05 -21.80 16 14 N -0.58 -21.50 5.45 -305.33 -1.66 -23.16 16 15 C -0.06 -2.69 6.90 37.83 0.26 -2.43 16 16 C -0.05 -2.50 10.84 85.44 0.93 -1.57 16 17 N -0.31 -18.30 10.41 -56.43 -0.59 -18.89 16 18 N -0.16 -8.98 3.73 -189.98 -0.71 -9.69 16 19 C -0.36 -18.62 10.24 84.02 0.86 -17.76 16 20 H 0.14 6.41 7.84 -2.91 -0.02 6.38 16 21 C 0.00 -0.18 5.50 84.96 0.47 0.29 16 22 N -0.82 -46.58 11.83 21.66 0.26 -46.33 16 23 Si 1.02 38.03 29.56 68.60 2.03 40.06 16 24 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 25 H -0.28 -10.13 7.11 99.48 0.71 -9.43 16 26 H -0.24 -8.21 7.11 99.48 0.71 -7.51 16 27 C -0.07 -3.43 11.50 83.41 0.96 -2.47 16 28 H 0.10 1.02 5.69 -2.91 -0.02 1.00 16 29 H 0.10 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.11 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.06 0.62 6.43 -2.39 -0.02 0.60 16 32 H 0.06 0.56 7.49 -2.39 -0.02 0.55 16 33 H 0.06 0.58 7.50 -2.39 -0.02 0.56 16 34 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.61 6.43 -2.39 -0.02 0.60 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.83 6.43 -2.39 -0.02 0.81 16 40 H 0.08 0.82 6.43 -2.39 -0.02 0.81 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.42 8.11 7.94 -92.71 -0.74 7.37 16 44 H 0.42 13.14 8.29 -92.71 -0.77 12.37 16 45 H 0.18 9.10 5.92 -2.91 -0.02 9.09 16 46 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 47 H 0.19 6.94 8.06 -2.91 -0.02 6.92 16 Total: -1.00 -71.49 389.03 3.94 -67.55 By element: Atomic # 1 Polarization: 41.94 SS G_CDS: -0.50 Total: 41.45 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 7.79 Total: 5.08 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -5.28 Total: -115.24 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.10 Total: -38.89 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -71.49 3.94 -67.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874292895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.017 kcal (2) G-P(sol) polarization free energy of solvation -71.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds