Wall clock time and date at job start Tue Mar 31 2020 19:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47078 * 2 1 4 4 H 1.08999 * 109.46779 * 304.99584 * 3 2 1 5 5 C 1.50701 * 109.46994 * 184.99957 * 3 2 1 6 6 H 1.08001 * 120.00115 * 239.99821 * 5 3 2 7 7 C 1.37881 * 120.00107 * 59.99800 * 5 3 2 8 8 N 1.31511 * 120.00152 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99896 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47185 * 60.00264 * 9 7 5 11 11 H 1.48495 * 109.47002 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47556 * 300.00267 * 9 7 5 13 13 N 1.46494 * 109.47196 * 64.99995 * 3 2 1 14 14 C 1.34779 * 119.99944 * 274.99955 * 13 3 2 15 15 O 1.21599 * 119.99865 * 0.02562 * 14 13 3 16 16 N 1.34770 * 120.00255 * 180.02562 * 14 13 3 17 17 C 1.40134 * 120.00145 * 174.87386 * 16 14 13 18 18 C 1.38845 * 120.00067 * 326.29758 * 17 16 14 19 19 C 1.38066 * 120.00192 * 179.76740 * 18 17 16 20 20 C 1.38855 * 119.99687 * 0.50209 * 19 18 17 21 21 N 1.40129 * 119.99802 * 179.72296 * 20 19 18 22 22 C 1.46504 * 119.99861 * 119.09717 * 21 20 19 23 23 C 1.34770 * 120.00250 * 299.09594 * 21 20 19 24 24 O 1.21593 * 120.00134 * 354.49606 * 23 21 20 25 25 N 1.34786 * 119.99899 * 174.49354 * 23 21 20 26 26 C 1.46503 * 119.99851 * 179.97438 * 25 23 21 27 27 C 1.38854 * 120.00197 * 359.75112 * 20 19 18 28 28 C 1.38065 * 119.99592 * 359.97438 * 27 20 19 29 29 H 1.09001 * 109.46521 * 60.00508 * 1 2 3 30 30 H 1.09000 * 109.46856 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47237 * 300.00221 * 1 2 3 32 32 H 1.08999 * 109.47697 * 239.99945 * 2 1 3 33 33 H 1.08999 * 109.47096 * 119.99982 * 2 1 3 34 34 H 0.97000 * 120.00374 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00018 * 95.00106 * 13 3 2 36 36 H 0.97002 * 120.00009 * 354.86493 * 16 14 13 37 37 H 1.08000 * 120.00062 * 359.97438 * 18 17 16 38 38 H 1.07995 * 119.99897 * 180.23294 * 19 18 17 39 39 H 1.09003 * 109.47195 * 89.99786 * 22 21 20 40 40 H 1.08998 * 109.47108 * 209.99967 * 22 21 20 41 41 H 1.09004 * 109.46786 * 329.99832 * 22 21 20 42 42 H 0.96996 * 120.00194 * 0.02562 * 25 23 21 43 43 H 1.08998 * 109.47120 * 300.00120 * 26 25 23 44 44 H 1.09000 * 109.46773 * 60.00223 * 26 25 23 45 45 H 1.08989 * 109.46812 * 179.97438 * 26 25 23 46 46 H 1.07998 * 120.00340 * 179.97438 * 27 20 19 47 47 H 1.08000 * 119.99955 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4063 0.3374 -2.1733 9 14 6.0050 0.8812 -1.3817 10 1 6.5975 0.1473 -0.2348 11 1 6.3978 0.2177 -2.6508 12 1 6.4996 2.2814 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3416 2.6318 0.4319 16 7 0.0787 3.2674 2.5182 17 6 -1.1424 3.9496 2.6032 18 6 -1.6458 4.6130 1.4922 19 6 -2.8513 5.2810 1.5745 20 6 -3.5552 5.2981 2.7712 21 7 -4.7759 5.9810 2.8564 22 6 -6.0015 5.2515 3.1908 23 6 -4.8224 7.3089 2.6307 24 8 -3.7934 7.9316 2.4522 25 7 -6.0095 7.9466 2.6029 26 6 -6.0600 9.3901 2.3581 27 6 -3.0493 4.6391 3.8838 28 6 -1.8466 3.9663 3.7998 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8294 -0.0611 -2.9499 35 1 2.2719 2.1232 1.9977 36 1 0.6674 3.2292 3.2882 37 1 -1.0960 4.6037 0.5627 38 1 -3.2445 5.7939 0.7093 39 1 -6.1376 5.2461 4.2723 40 1 -6.8548 5.7394 2.7196 41 1 -5.9241 4.2261 2.8292 42 1 -6.8303 7.4499 2.7457 43 1 -5.4999 9.9102 3.1352 44 1 -5.6205 9.6092 1.3850 45 1 -7.0972 9.7247 2.3716 46 1 -3.5966 4.6527 4.8147 47 1 -1.4528 3.4540 4.6652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881057293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:34 Heat of formation + Delta-G solvation = -12.459916 kcal Electronic energy + Delta-G solvation = -28504.774682 eV Core-core repulsion = 24495.499307 eV Total energy + Delta-G solvation = -4009.275374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.83474 -39.98659 -38.37681 -36.10195 -35.11651 -34.82198 -33.73440 -32.34198 -30.88230 -30.83510 -28.97243 -27.45648 -26.96097 -25.99398 -23.25267 -22.81595 -22.42905 -20.75550 -20.18791 -19.50452 -18.75347 -18.17833 -17.52069 -17.08869 -16.17848 -15.95435 -15.39207 -15.19936 -14.97452 -14.49384 -14.41157 -14.25879 -13.92561 -13.77518 -13.42957 -13.13720 -13.06910 -12.96304 -12.76752 -12.68216 -12.56878 -12.30742 -12.00112 -11.54092 -11.24993 -11.19654 -10.97814 -10.82535 -10.38943 -10.31957 -10.18568 -10.15419 -9.62389 -9.47381 -9.39776 -9.04506 -9.01127 -8.76107 -8.49979 -7.93017 -7.56947 -6.12021 -4.21370 1.36064 1.53707 2.36746 2.94936 3.20939 3.26155 3.31677 3.34450 3.57201 3.74234 4.09892 4.32826 4.66836 4.82775 4.91763 4.98482 5.01566 5.06705 5.19666 5.22868 5.26106 5.46933 5.47880 5.54496 5.71641 5.90530 6.11125 6.11302 6.23052 6.41918 6.48754 6.50351 6.61797 6.67994 6.71945 6.84702 7.03922 7.13263 7.28484 7.36780 7.39239 7.47221 7.59037 7.64915 7.87586 7.99593 8.19206 8.35034 8.74084 8.85688 9.26552 9.47102 10.93280 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.002174 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.348816 B =12878.690655 C =13190.184960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.719 5.719 14 C 0.692 3.308 15 O -0.575 6.575 16 N -0.698 5.698 17 C 0.185 3.815 18 C -0.107 4.107 19 C -0.083 4.083 20 C 0.125 3.875 21 N -0.584 5.584 22 C 0.080 3.920 23 C 0.703 3.297 24 O -0.571 6.571 25 N -0.751 5.751 26 C 0.106 3.894 27 C -0.103 4.103 28 C -0.147 4.147 29 H 0.050 0.950 30 H 0.021 0.979 31 H 0.038 0.962 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.265 0.735 35 H 0.386 0.614 36 H 0.402 0.598 37 H 0.143 0.857 38 H 0.121 0.879 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.397 0.603 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.122 0.878 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.501 10.239 13.749 25.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.369 5.369 14 C 0.393 3.607 15 O -0.452 6.452 16 N -0.345 5.345 17 C 0.089 3.911 18 C -0.129 4.129 19 C -0.103 4.103 20 C 0.033 3.967 21 N -0.317 5.317 22 C -0.062 4.062 23 C 0.405 3.595 24 O -0.447 6.447 25 N -0.408 5.408 26 C -0.039 4.039 27 C -0.123 4.123 28 C -0.169 4.169 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.218 0.782 36 H 0.237 0.763 37 H 0.161 0.839 38 H 0.139 0.861 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.232 0.768 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.140 0.860 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.350 10.550 12.464 25.320 hybrid contribution 1.037 -0.361 0.758 1.334 sum -18.313 10.189 13.222 24.779 Atomic orbital electron populations 1.21814 0.98252 0.97868 1.01319 1.21960 0.92703 0.99882 1.02212 1.18717 0.93983 0.88886 0.79944 0.93196 1.21183 0.90648 1.39144 1.06338 0.92144 1.24875 0.98609 0.94812 0.95363 1.69883 1.35212 1.37473 1.09315 0.86503 0.84819 0.78309 0.77423 1.20197 1.21143 1.20192 1.45841 1.13009 1.58812 1.19283 1.16115 0.83610 0.78710 0.82302 1.90910 1.51680 1.64412 1.38199 1.42951 1.20029 1.56376 1.15184 1.17567 0.86405 0.92656 0.94519 1.21138 0.96422 0.95782 0.99523 1.20975 0.94991 0.98081 0.96295 1.17192 0.87088 0.98797 0.93641 1.44410 1.07511 1.05899 1.73834 1.21816 0.85468 0.98162 1.00778 1.15901 0.84207 0.81195 0.78231 1.90980 1.32582 1.65188 1.55951 1.45073 1.07244 1.10054 1.78476 1.21411 1.01818 0.78796 1.01843 1.20729 0.95504 0.99239 0.96846 1.20640 0.95160 1.03483 0.97572 0.93133 0.96037 0.94274 0.88270 0.95119 0.92483 0.78232 0.76329 0.83925 0.86115 0.92284 0.91364 0.90113 0.76805 0.92304 0.92234 0.90661 0.85958 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.29 7.13 2.24 -69.08 -0.15 6.97 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.55 11.29 55.43 0.63 -23.92 16 9 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.72 -14.62 5.03 -59.81 -0.30 -14.92 16 14 C 0.69 13.69 6.87 -86.92 -0.60 13.10 16 15 O -0.57 -13.28 11.18 5.28 0.06 -13.22 16 16 N -0.70 -10.73 5.35 -14.18 -0.08 -10.81 16 17 C 0.19 2.84 6.28 -83.61 -0.52 2.32 16 18 C -0.11 -1.81 8.65 -39.42 -0.34 -2.15 16 19 C -0.08 -1.27 9.18 -39.42 -0.36 -1.63 16 20 C 0.12 1.66 4.96 -83.61 -0.41 1.25 16 21 N -0.58 -6.38 2.96 -126.17 -0.37 -6.75 16 22 C 0.08 0.50 10.13 59.85 0.61 1.10 16 23 C 0.70 8.72 8.09 -86.92 -0.70 8.02 16 24 O -0.57 -9.73 15.88 5.28 0.08 -9.64 16 25 N -0.75 -6.00 5.60 -72.07 -0.40 -6.41 16 26 C 0.11 0.70 10.70 59.85 0.64 1.34 16 27 C -0.10 -1.22 9.72 -39.42 -0.38 -1.60 16 28 C -0.15 -1.83 9.96 -39.42 -0.39 -2.22 16 29 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.39 6.74 8.56 -40.82 -0.35 6.39 16 36 H 0.40 4.78 8.84 -40.82 -0.36 4.42 16 37 H 0.14 2.73 6.43 -52.49 -0.34 2.39 16 38 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 39 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.25 6.16 -51.93 -0.32 -0.07 16 41 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 42 H 0.40 1.87 6.47 -40.82 -0.26 1.61 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.24 8.14 -51.94 -0.42 -0.18 16 46 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 47 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -34.54 383.50 -9.28 -43.81 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -6.80 Total: 12.62 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -2.85 Total: 7.93 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.53 Total: -62.81 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.14 Total: -22.86 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.54 -9.28 -43.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881057293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.353 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds