Wall clock time and date at job start Tue Mar 31 2020 19:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47425 * 2 1 4 4 H 1.09004 * 109.46743 * 55.00035 * 3 2 1 5 5 C 1.50695 * 109.47075 * 175.00000 * 3 2 1 6 6 H 1.08000 * 119.99464 * 120.00760 * 5 3 2 7 7 C 1.37873 * 120.00277 * 300.00170 * 5 3 2 8 8 N 1.31519 * 119.99958 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00046 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47367 * 89.99859 * 9 7 5 11 11 H 1.48500 * 109.47027 * 209.99731 * 9 7 5 12 12 H 1.48499 * 109.47006 * 329.99579 * 9 7 5 13 13 N 1.46498 * 109.46974 * 295.00333 * 3 2 1 14 14 C 1.34779 * 120.00143 * 85.27336 * 13 3 2 15 15 O 1.21586 * 120.00171 * 359.72155 * 14 13 3 16 16 N 1.34779 * 120.00036 * 179.72526 * 14 13 3 17 17 C 1.40128 * 120.00089 * 175.78812 * 16 14 13 18 18 C 1.38851 * 119.99962 * 214.91932 * 17 16 14 19 19 C 1.38063 * 119.99581 * 179.76723 * 18 17 16 20 20 C 1.38853 * 120.00527 * 0.50425 * 19 18 17 21 21 N 1.40129 * 120.00164 * 179.72660 * 20 19 18 22 22 C 1.46499 * 120.00050 * 124.11147 * 21 20 19 23 23 C 1.34779 * 119.99994 * 304.10556 * 21 20 19 24 24 O 1.21589 * 119.99981 * 355.06012 * 23 21 20 25 25 N 1.34777 * 119.99957 * 175.05282 * 23 21 20 26 26 C 1.46499 * 120.00084 * 180.02562 * 25 23 21 27 27 C 1.38850 * 119.99499 * 359.74790 * 20 19 18 28 28 C 1.38059 * 120.00295 * 0.02562 * 27 20 19 29 29 H 1.08998 * 109.46990 * 59.99817 * 1 2 3 30 30 H 1.08994 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46880 * 300.00277 * 1 2 3 32 32 H 1.09004 * 109.46707 * 240.00351 * 2 1 3 33 33 H 1.08998 * 109.46990 * 120.00182 * 2 1 3 34 34 H 0.96998 * 119.99849 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00102 * 264.99346 * 13 3 2 36 36 H 0.97002 * 119.99688 * 355.77988 * 16 14 13 37 37 H 1.07995 * 119.99994 * 359.97438 * 18 17 16 38 38 H 1.08001 * 119.99878 * 180.23392 * 19 18 17 39 39 H 1.08997 * 109.47366 * 89.99766 * 22 21 20 40 40 H 1.09002 * 109.47152 * 209.99897 * 22 21 20 41 41 H 1.09007 * 109.46910 * 329.99738 * 22 21 20 42 42 H 0.97007 * 119.99953 * 0.02562 * 25 23 21 43 43 H 1.08996 * 109.46896 * 60.00354 * 26 25 23 44 44 H 1.08997 * 109.46955 * 180.02562 * 26 25 23 45 45 H 1.09004 * 109.46972 * 300.00582 * 26 25 23 46 46 H 1.08003 * 119.99735 * 179.97438 * 27 20 19 47 47 H 1.08005 * 120.00274 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8811 1.3817 10 1 6.4418 2.1139 2.0848 11 1 6.4396 -0.3100 2.1548 12 1 6.6135 0.8414 0.0277 13 7 1.6525 2.0975 -1.2518 14 6 0.4373 2.6693 -1.3650 15 8 -0.3393 2.6371 -0.4300 16 7 0.0828 3.2767 -2.5147 17 6 -1.2111 3.7936 -2.6641 18 6 -1.8378 3.7490 -3.9023 19 6 -3.1145 4.2539 -4.0483 20 6 -3.7677 4.8157 -2.9594 21 7 -5.0613 5.3333 -3.1090 22 6 -6.1485 4.8456 -2.2568 23 6 -5.3052 6.2800 -4.0369 24 8 -4.3878 6.7494 -4.6822 25 7 -6.5660 6.7061 -4.2495 26 6 -6.8313 7.7347 -5.2585 27 6 -3.1389 4.8650 -1.7225 28 6 -1.8641 4.3559 -1.5753 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.8294 -0.0611 2.9499 35 1 2.2720 2.1232 -1.9978 36 1 0.7234 3.3562 -3.2388 37 1 -1.3279 3.3163 -4.7504 38 1 -3.6035 4.2158 -5.0105 39 1 -6.2054 5.4558 -1.3555 40 1 -7.0919 4.9097 -2.7991 41 1 -5.9572 3.8083 -1.9819 42 1 -7.2979 6.3317 -3.7345 43 1 -6.5057 7.3777 -6.2355 44 1 -7.8996 7.9487 -5.2869 45 1 -6.2857 8.6432 -5.0033 46 1 -3.6468 5.3024 -0.8756 47 1 -1.3748 4.3946 -0.6132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881057295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:37 Heat of formation + Delta-G solvation = -12.589085 kcal Electronic energy + Delta-G solvation = -28484.793646 eV Core-core repulsion = 24475.512670 eV Total energy + Delta-G solvation = -4009.280976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.86488 -39.99221 -38.37125 -36.11173 -35.14593 -34.83771 -33.73324 -32.35069 -30.86764 -30.83622 -28.97666 -27.47203 -26.96846 -25.98304 -23.34095 -22.83082 -22.27142 -20.80504 -20.23060 -19.50854 -18.78554 -18.10065 -17.48564 -17.13967 -16.23215 -15.92899 -15.43570 -15.12124 -15.00171 -14.59176 -14.40779 -14.22658 -13.99834 -13.76145 -13.45016 -13.11842 -13.05621 -12.96666 -12.69669 -12.68734 -12.54082 -12.33226 -12.01619 -11.56630 -11.30228 -11.25401 -10.96177 -10.85474 -10.42412 -10.32268 -10.18086 -10.06960 -9.59993 -9.50897 -9.33457 -9.12010 -9.04464 -8.76595 -8.50635 -7.92004 -7.53815 -6.13060 -4.22252 1.35618 1.56862 2.34616 2.91986 3.21638 3.24698 3.31607 3.34408 3.56177 3.74612 4.07945 4.32047 4.67139 4.79622 4.92357 4.99448 5.06037 5.11906 5.18790 5.19481 5.29108 5.43967 5.47230 5.55150 5.66747 5.90823 6.07898 6.15523 6.27478 6.41789 6.49156 6.52257 6.56276 6.67611 6.72989 6.85486 7.03788 7.13317 7.29390 7.36784 7.38811 7.46936 7.56610 7.64416 7.86928 7.99362 8.18622 8.31470 8.73754 8.85275 9.26263 9.46419 10.92252 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.031799 B = 0.002094 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.331827 B =13370.957167 C =13700.559727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.719 5.719 14 C 0.693 3.307 15 O -0.577 6.577 16 N -0.698 5.698 17 C 0.179 3.821 18 C -0.143 4.143 19 C -0.087 4.087 20 C 0.127 3.873 21 N -0.582 5.582 22 C 0.079 3.921 23 C 0.703 3.297 24 O -0.573 6.573 25 N -0.751 5.751 26 C 0.106 3.894 27 C -0.106 4.106 28 C -0.107 4.107 29 H 0.038 0.962 30 H 0.020 0.980 31 H 0.049 0.951 32 H 0.030 0.970 33 H 0.099 0.901 34 H 0.264 0.736 35 H 0.386 0.614 36 H 0.402 0.598 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.397 0.603 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.123 0.877 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.899 9.177 -12.529 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.370 5.370 14 C 0.394 3.606 15 O -0.454 6.454 16 N -0.346 5.346 17 C 0.083 3.917 18 C -0.164 4.164 19 C -0.107 4.107 20 C 0.035 3.965 21 N -0.314 5.314 22 C -0.064 4.064 23 C 0.405 3.595 24 O -0.449 6.449 25 N -0.408 5.408 26 C -0.038 4.038 27 C -0.127 4.127 28 C -0.128 4.128 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.218 0.782 36 H 0.237 0.763 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.232 0.768 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.141 0.859 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.853 9.343 -11.902 24.962 hybrid contribution 1.109 -0.222 -0.346 1.182 sum -18.745 9.121 -12.248 24.178 Atomic orbital electron populations 1.21806 0.98252 0.97871 1.01291 1.21955 0.92712 0.99860 1.02202 1.18718 0.93979 0.88905 0.79945 0.93197 1.21223 0.90679 1.39035 1.06310 0.92103 1.24876 0.98608 0.94809 0.95392 1.69898 1.35107 1.37567 1.09307 0.86445 0.84823 0.77632 0.78168 1.20583 1.21086 1.19895 1.45839 1.13439 1.58358 1.19330 1.16105 0.83650 0.78647 0.82227 1.90877 1.51726 1.64892 1.37922 1.42910 1.12393 1.60957 1.18304 1.17573 0.85163 0.94907 0.94073 1.20706 0.94972 1.03916 0.96826 1.20734 0.94708 0.97250 0.98057 1.17244 0.84589 1.00237 0.94441 1.44442 1.08376 1.40743 1.37828 1.21838 0.88793 1.01276 0.94476 1.15888 0.83448 0.79623 0.80560 1.90966 1.43202 1.59661 1.51087 1.45077 1.07208 1.44896 1.43637 1.21409 1.00785 0.90506 0.91144 1.20936 0.94737 1.00549 0.96481 1.21259 0.94734 0.96805 1.00006 0.94271 0.96044 0.93149 0.95114 0.88280 0.92552 0.78223 0.76311 0.85607 0.86146 0.92090 0.91345 0.90002 0.76751 0.92300 0.90650 0.92279 0.85895 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.52 37.16 0.32 -2.70 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.29 7.07 2.24 -69.08 -0.15 6.91 16 4 H 0.05 1.43 7.57 -51.93 -0.39 1.04 16 5 C -0.53 -13.86 8.73 -34.44 -0.30 -14.16 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.39 11.30 55.43 0.63 -23.76 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 13 N -0.72 -14.53 5.02 -59.81 -0.30 -14.83 16 14 C 0.69 13.58 6.98 -86.91 -0.61 12.97 16 15 O -0.58 -13.05 10.94 5.29 0.06 -13.00 16 16 N -0.70 -10.74 5.35 -14.18 -0.08 -10.82 16 17 C 0.18 2.76 6.30 -83.61 -0.53 2.23 16 18 C -0.14 -1.90 9.96 -39.42 -0.39 -2.30 16 19 C -0.09 -1.17 8.90 -39.42 -0.35 -1.52 16 20 C 0.13 1.69 5.15 -83.61 -0.43 1.26 16 21 N -0.58 -6.33 2.99 -126.18 -0.38 -6.71 16 22 C 0.08 0.51 10.03 59.85 0.60 1.12 16 23 C 0.70 8.43 8.06 -86.92 -0.70 7.73 16 24 O -0.57 -9.30 15.65 5.29 0.08 -9.22 16 25 N -0.75 -5.74 5.60 -72.07 -0.40 -6.14 16 26 C 0.11 0.66 10.70 59.85 0.64 1.30 16 27 C -0.11 -1.47 9.61 -39.42 -0.38 -1.85 16 28 C -0.11 -1.71 8.69 -39.42 -0.34 -2.05 16 29 H 0.04 0.86 5.66 -51.93 -0.29 0.57 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 35 H 0.39 6.72 8.56 -40.82 -0.35 6.38 16 36 H 0.40 4.87 8.84 -40.82 -0.36 4.51 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 38 H 0.12 1.54 8.01 -52.49 -0.42 1.12 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.25 6.18 -51.93 -0.32 -0.07 16 41 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 42 H 0.40 1.80 6.48 -40.82 -0.26 1.54 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 47 H 0.15 2.67 6.24 -52.48 -0.33 2.35 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -33.92 382.69 -9.30 -43.22 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -6.79 Total: 12.71 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -2.87 Total: 7.37 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.53 Total: -62.27 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.14 Total: -22.21 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.92 -9.30 -43.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881057295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.629 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds