Wall clock time and date at job start Tue Mar 31 2020 19:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47425 * 2 1 4 4 H 1.09004 * 109.46743 * 55.00035 * 3 2 1 5 5 C 1.50695 * 109.47075 * 175.00000 * 3 2 1 6 6 H 1.08000 * 119.99464 * 120.00760 * 5 3 2 7 7 C 1.37873 * 120.00277 * 300.00170 * 5 3 2 8 8 N 1.31519 * 119.99958 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00046 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47367 * 89.99859 * 9 7 5 11 11 H 1.48500 * 109.47027 * 209.99731 * 9 7 5 12 12 H 1.48499 * 109.47006 * 329.99579 * 9 7 5 13 13 N 1.46498 * 109.46974 * 295.00333 * 3 2 1 14 14 C 1.34779 * 120.00143 * 85.27336 * 13 3 2 15 15 O 1.21586 * 120.00171 * 359.72155 * 14 13 3 16 16 N 1.34779 * 120.00036 * 179.72526 * 14 13 3 17 17 C 1.40128 * 120.00089 * 175.78812 * 16 14 13 18 18 C 1.38851 * 119.99962 * 214.91932 * 17 16 14 19 19 C 1.38063 * 119.99581 * 179.76723 * 18 17 16 20 20 C 1.38853 * 120.00527 * 0.50425 * 19 18 17 21 21 N 1.40129 * 120.00164 * 179.72660 * 20 19 18 22 22 C 1.46499 * 120.00050 * 124.11147 * 21 20 19 23 23 C 1.34779 * 119.99994 * 304.10556 * 21 20 19 24 24 O 1.21589 * 119.99981 * 355.06012 * 23 21 20 25 25 N 1.34777 * 119.99957 * 175.05282 * 23 21 20 26 26 C 1.46499 * 120.00084 * 180.02562 * 25 23 21 27 27 C 1.38850 * 119.99499 * 359.74790 * 20 19 18 28 28 C 1.38059 * 120.00295 * 0.02562 * 27 20 19 29 29 H 1.08998 * 109.46990 * 59.99817 * 1 2 3 30 30 H 1.08994 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46880 * 300.00277 * 1 2 3 32 32 H 1.09004 * 109.46707 * 240.00351 * 2 1 3 33 33 H 1.08998 * 109.46990 * 120.00182 * 2 1 3 34 34 H 0.96998 * 119.99849 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00102 * 264.99346 * 13 3 2 36 36 H 0.97002 * 119.99688 * 355.77988 * 16 14 13 37 37 H 1.07995 * 119.99994 * 359.97438 * 18 17 16 38 38 H 1.08001 * 119.99878 * 180.23392 * 19 18 17 39 39 H 1.08997 * 109.47366 * 89.99766 * 22 21 20 40 40 H 1.09002 * 109.47152 * 209.99897 * 22 21 20 41 41 H 1.09007 * 109.46910 * 329.99738 * 22 21 20 42 42 H 0.97007 * 119.99953 * 0.02562 * 25 23 21 43 43 H 1.08996 * 109.46896 * 60.00354 * 26 25 23 44 44 H 1.08997 * 109.46955 * 180.02562 * 26 25 23 45 45 H 1.09004 * 109.46972 * 300.00582 * 26 25 23 46 46 H 1.08003 * 119.99735 * 179.97438 * 27 20 19 47 47 H 1.08005 * 120.00274 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8811 1.3817 10 1 6.4418 2.1139 2.0848 11 1 6.4396 -0.3100 2.1548 12 1 6.6135 0.8414 0.0277 13 7 1.6525 2.0975 -1.2518 14 6 0.4373 2.6693 -1.3650 15 8 -0.3393 2.6371 -0.4300 16 7 0.0828 3.2767 -2.5147 17 6 -1.2111 3.7936 -2.6641 18 6 -1.8378 3.7490 -3.9023 19 6 -3.1145 4.2539 -4.0483 20 6 -3.7677 4.8157 -2.9594 21 7 -5.0613 5.3333 -3.1090 22 6 -6.1485 4.8456 -2.2568 23 6 -5.3052 6.2800 -4.0369 24 8 -4.3878 6.7494 -4.6822 25 7 -6.5660 6.7061 -4.2495 26 6 -6.8313 7.7347 -5.2585 27 6 -3.1389 4.8650 -1.7225 28 6 -1.8641 4.3559 -1.5753 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.8294 -0.0611 2.9499 35 1 2.2720 2.1232 -1.9978 36 1 0.7234 3.3562 -3.2388 37 1 -1.3279 3.3163 -4.7504 38 1 -3.6035 4.2158 -5.0105 39 1 -6.2054 5.4558 -1.3555 40 1 -7.0919 4.9097 -2.7991 41 1 -5.9572 3.8083 -1.9819 42 1 -7.2979 6.3317 -3.7345 43 1 -6.5057 7.3777 -6.2355 44 1 -7.8996 7.9487 -5.2869 45 1 -6.2857 8.6432 -5.0033 46 1 -3.6468 5.3024 -0.8756 47 1 -1.3748 4.3946 -0.6132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881057295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:37 Heat of formation + Delta-G solvation = -36.591519 kcal Electronic energy + Delta-G solvation = -28485.834470 eV Core-core repulsion = 24475.512670 eV Total energy + Delta-G solvation = -4010.321799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.87217 -41.31927 -39.59251 -37.42203 -36.53353 -35.79714 -35.01270 -34.20691 -32.64385 -31.94920 -30.12688 -28.74236 -28.10410 -26.85364 -25.07141 -24.15054 -23.39697 -22.26178 -21.32363 -21.17988 -19.86104 -19.45314 -18.76222 -18.13627 -17.79715 -17.09227 -16.94050 -16.51381 -16.12492 -15.98646 -15.67728 -15.23006 -15.15349 -14.97360 -14.54668 -14.50354 -14.31170 -14.15242 -13.74370 -13.62148 -13.59416 -13.47481 -13.28204 -13.15275 -12.90675 -12.85090 -12.68050 -12.43744 -12.13681 -12.04153 -11.59402 -11.42298 -11.30568 -11.04585 -10.87360 -10.51833 -10.36676 -9.99706 -9.89251 -9.62312 -8.71583 -8.14356 -6.30992 0.23937 0.44629 1.46235 1.46394 1.56244 1.56942 1.82983 2.00996 2.26371 2.43781 2.82296 3.01815 3.15216 3.50188 3.94945 4.00535 4.16027 4.38025 4.39697 4.51016 4.53031 4.53398 4.60701 4.61775 4.67882 4.77623 4.81396 4.86676 4.97457 5.05037 5.09981 5.25309 5.35955 5.39768 5.43409 5.47361 5.50189 5.58164 5.62600 5.64804 5.79333 5.87458 5.90326 6.15771 6.19713 6.31738 6.77053 6.86449 7.28711 7.37260 7.47585 7.75458 8.90949 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.031799 B = 0.002094 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.331827 B =13370.957167 C =13700.559727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.913 5.913 9 Si 0.969 3.031 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.261 1.261 13 N -0.716 5.716 14 C 0.693 3.307 15 O -0.610 6.610 16 N -0.679 5.679 17 C 0.156 3.844 18 C -0.130 4.130 19 C -0.094 4.094 20 C 0.130 3.870 21 N -0.583 5.583 22 C 0.071 3.929 23 C 0.696 3.304 24 O -0.623 6.623 25 N -0.733 5.733 26 C 0.102 3.898 27 C -0.108 4.108 28 C -0.125 4.125 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.026 0.974 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.265 0.735 35 H 0.401 0.599 36 H 0.420 0.580 37 H 0.153 0.847 38 H 0.129 0.871 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.415 0.585 43 H 0.048 0.952 44 H 0.116 0.884 45 H 0.045 0.955 46 H 0.137 0.863 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.103 9.418 -14.455 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.186 1.186 13 N -0.368 5.368 14 C 0.394 3.606 15 O -0.490 6.490 16 N -0.329 5.329 17 C 0.061 3.939 18 C -0.151 4.151 19 C -0.114 4.114 20 C 0.037 3.963 21 N -0.315 5.315 22 C -0.070 4.070 23 C 0.397 3.603 24 O -0.503 6.503 25 N -0.391 5.391 26 C -0.042 4.042 27 C -0.129 4.129 28 C -0.146 4.146 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.257 0.743 37 H 0.170 0.830 38 H 0.147 0.853 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.253 0.747 43 H 0.067 0.933 44 H 0.135 0.865 45 H 0.064 0.936 46 H 0.155 0.845 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.123 9.604 -13.876 27.036 hybrid contribution 1.308 -0.210 0.227 1.344 sum -19.814 9.394 -13.650 25.829 Atomic orbital electron populations 1.21623 0.96980 0.98838 1.00191 1.21801 0.93722 0.99243 1.01241 1.18271 0.93380 0.88844 0.80214 0.98139 1.21563 0.91393 1.38855 1.06682 0.91067 1.25738 1.03158 0.94457 0.95083 1.70047 1.36961 1.38329 1.09818 0.85385 0.79295 0.77341 0.78530 1.20583 1.21000 1.18552 1.45451 1.14234 1.58572 1.18539 1.16162 0.82988 0.78572 0.82884 1.90865 1.52615 1.65990 1.39536 1.42554 1.13021 1.59924 1.17368 1.17714 0.85207 0.96177 0.94830 1.20906 0.94796 1.02790 0.96589 1.20948 0.94861 0.97162 0.98471 1.17391 0.85734 0.99132 0.94014 1.44546 1.08307 1.40473 1.38138 1.22129 0.88698 1.01327 0.94849 1.16157 0.84220 0.79600 0.80288 1.90929 1.44984 1.61407 1.52939 1.44998 1.06143 1.44446 1.43520 1.21581 1.03176 0.89329 0.90087 1.21006 0.94050 1.00394 0.97453 1.21139 0.95861 0.98375 0.99223 0.94053 0.93888 0.95487 0.94150 0.90919 0.92609 0.76408 0.74264 0.82954 0.85305 0.90884 0.88069 0.90054 0.74692 0.93302 0.86527 0.93611 0.84517 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 8.52 71.98 0.61 -4.78 16 2 C -0.12 -5.93 5.45 30.60 0.17 -5.76 16 3 C 0.30 15.03 2.24 44.25 0.10 15.13 16 4 H 0.00 0.04 7.57 -2.38 -0.02 0.02 16 5 C -0.55 -28.56 8.73 25.60 0.22 -28.34 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.85 5.29 84.65 0.45 1.29 16 8 N -0.91 -51.78 11.30 21.45 0.24 -51.54 16 9 Si 0.97 41.88 29.54 68.60 2.03 43.90 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 13 N -0.72 -29.13 5.02 -461.41 -2.32 -31.45 16 14 C 0.69 27.58 6.98 179.05 1.25 28.83 16 15 O -0.61 -28.75 10.94 -3.99 -0.04 -28.80 16 16 N -0.68 -20.65 5.35 -317.05 -1.70 -22.35 16 17 C 0.16 4.77 6.30 38.11 0.24 5.01 16 18 C -0.13 -3.28 9.96 22.38 0.22 -3.05 16 19 C -0.09 -2.41 8.90 22.38 0.20 -2.21 16 20 C 0.13 3.35 5.15 38.11 0.20 3.55 16 21 N -0.58 -11.72 2.99 -671.39 -2.01 -13.73 16 22 C 0.07 0.75 10.03 127.77 1.28 2.03 16 23 C 0.70 15.64 8.06 179.05 1.44 17.09 16 24 O -0.62 -19.91 15.65 -4.00 -0.06 -19.98 16 25 N -0.73 -9.39 5.60 -500.19 -2.80 -12.19 16 26 C 0.10 1.04 10.70 127.77 1.37 2.41 16 27 C -0.11 -2.99 9.61 22.37 0.22 -2.78 16 28 C -0.12 -4.10 8.69 22.38 0.19 -3.91 16 29 H 0.04 1.83 5.66 -2.39 -0.01 1.82 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.03 1.31 7.85 -2.39 -0.02 1.29 16 32 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.07 3.98 5.95 -2.39 -0.01 3.97 16 34 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.40 13.68 8.56 -92.71 -0.79 12.89 16 36 H 0.42 9.59 8.84 -92.71 -0.82 8.77 16 37 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.13 3.10 8.01 -2.91 -0.02 3.08 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 0.37 6.18 -2.39 -0.01 0.36 16 41 H 0.08 0.91 8.05 -2.38 -0.02 0.89 16 42 H 0.41 2.29 6.48 -92.70 -0.60 1.69 16 43 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 47 H 0.12 4.62 6.24 -2.91 -0.02 4.60 16 Total: -1.00 -76.66 382.69 0.31 -76.35 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -1.19 Total: 35.27 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 8.16 Total: 24.51 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -8.58 Total: -131.26 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -0.11 Total: -48.77 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -76.66 0.31 -76.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881057295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.759 kcal (2) G-P(sol) polarization free energy of solvation -76.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds