Wall clock time and date at job start Tue Mar 31 2020 18:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99791 * 2 1 4 4 C 1.50702 * 109.47150 * 270.00123 * 3 2 1 5 5 O 1.21281 * 120.00051 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99671 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99874 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.46887 * 60.00211 * 7 6 4 9 9 C 1.53000 * 109.46958 * 180.02562 * 7 6 4 10 10 C 1.53000 * 109.47190 * 300.00231 * 7 6 4 11 11 C 1.34777 * 120.00293 * 180.02562 * 2 1 3 12 12 O 1.21568 * 120.00237 * 179.97438 * 11 2 1 13 13 N 1.34773 * 119.99662 * 0.02562 * 11 2 1 14 14 C 1.39250 * 119.99978 * 183.66124 * 13 11 2 15 15 C 1.39689 * 119.57221 * 339.03991 * 14 13 11 16 16 C 1.38640 * 119.49200 * 180.02562 * 15 14 13 17 17 C 1.38350 * 118.67474 * 359.74168 * 16 15 14 18 18 C 1.40577 * 119.13030 * 0.50004 * 17 16 15 19 19 C 1.41329 * 119.78722 * 179.77062 * 18 17 16 20 20 H 1.08004 * 120.00229 * 4.86671 * 19 18 17 21 21 C 1.40026 * 119.99925 * 184.86791 * 19 18 17 22 22 N 1.30741 * 120.00184 * 184.81816 * 21 19 18 23 23 Si 1.86802 * 120.00024 * 4.81588 * 21 19 18 24 24 H 1.48501 * 109.47292 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47136 * 300.00002 * 23 21 19 26 26 H 1.48503 * 109.47143 * 59.99811 * 23 21 19 27 27 N 1.31900 * 119.57734 * 159.06345 * 14 13 11 28 28 H 1.08992 * 109.47159 * 269.99709 * 1 2 3 29 29 H 1.09000 * 109.47494 * 30.00044 * 1 2 3 30 30 H 1.09001 * 109.46870 * 149.99408 * 1 2 3 31 31 H 1.08997 * 109.47092 * 30.00389 * 3 2 1 32 32 H 1.08996 * 109.46868 * 149.99875 * 3 2 1 33 33 H 0.97006 * 120.00431 * 0.02562 * 6 4 3 34 34 H 1.09004 * 109.47278 * 59.99967 * 8 7 6 35 35 H 1.09003 * 109.46778 * 179.97438 * 8 7 6 36 36 H 1.09001 * 109.47411 * 300.00011 * 8 7 6 37 37 H 1.08994 * 109.47730 * 60.00539 * 9 7 6 38 38 H 1.09005 * 109.47101 * 180.02562 * 9 7 6 39 39 H 1.09004 * 109.46972 * 299.99889 * 9 7 6 40 40 H 1.09001 * 109.46951 * 60.00085 * 10 7 6 41 41 H 1.09000 * 109.46923 * 179.97438 * 10 7 6 42 42 H 1.08996 * 109.47114 * 300.00110 * 10 7 6 43 43 H 0.97001 * 120.00583 * 3.65442 * 13 11 2 44 44 H 1.08002 * 120.25160 * 359.97438 * 15 14 13 45 45 H 1.08003 * 120.66512 * 179.97438 * 16 15 14 46 46 H 1.08005 * 120.43675 * 180.24671 * 17 16 15 47 47 H 0.97001 * 120.00183 * 354.98460 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 8 2.0550 1.0211 -2.3427 6 7 3.1106 2.8517 -1.6670 7 6 3.3553 3.2744 -3.0482 8 6 2.0187 3.4565 -3.7702 9 6 4.1201 4.5995 -3.0481 10 6 4.1831 2.2083 -3.7688 11 6 2.1389 -1.1672 -0.0005 12 8 3.3546 -1.1672 -0.0010 13 7 1.4651 -2.3343 -0.0016 14 6 2.1592 -3.5391 0.0749 15 6 3.5085 -3.5813 -0.2840 16 6 4.1978 -4.7818 -0.2077 17 6 3.5235 -5.9078 0.2300 18 6 2.1641 -5.8017 0.5719 19 6 1.4606 -6.9442 1.0160 20 1 1.9848 -7.8763 1.1671 21 6 0.0839 -6.8676 1.2601 22 7 -0.5495 -7.8962 1.7602 23 14 -0.8476 -5.2958 0.8713 24 1 -2.2807 -5.4708 1.2190 25 1 -0.2800 -4.1752 1.6634 26 1 -0.7226 -4.9916 -0.5768 27 7 1.5340 -4.6258 0.4848 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5139 32 1 3.1498 1.1385 0.5138 33 1 3.4258 3.3976 -0.9297 34 1 1.4289 4.2160 -3.2568 35 1 2.2007 3.7714 -4.7977 36 1 1.4741 2.5122 -3.7702 37 1 5.0724 4.4694 -2.5340 38 1 4.3018 4.9143 -4.0758 39 1 3.5307 5.3592 -2.5347 40 1 3.6385 1.2641 -3.7689 41 1 4.3647 2.5227 -4.7966 42 1 5.1352 2.0786 -3.2545 43 1 0.4966 -2.3352 -0.0555 44 1 4.0107 -2.6858 -0.6191 45 1 5.2413 -4.8361 -0.4809 46 1 4.0338 -6.8568 0.3041 47 1 -0.0820 -8.7355 1.8942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881155815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:41 Heat of formation + Delta-G solvation = -22.624711 kcal Electronic energy + Delta-G solvation = -29322.770192 eV Core-core repulsion = 25313.054039 eV Total energy + Delta-G solvation = -4009.716153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.77917 -39.93777 -38.35114 -36.77270 -35.33180 -34.58682 -33.43135 -32.43004 -31.04983 -29.66989 -28.37889 -27.70093 -27.46100 -26.35658 -25.19097 -22.60840 -21.72304 -21.16159 -19.80330 -19.55453 -18.54751 -17.99511 -17.56481 -16.88058 -16.17302 -15.48505 -15.43342 -15.18287 -14.92485 -14.60769 -14.36993 -13.97035 -13.88252 -13.74341 -13.51586 -13.23704 -12.87661 -12.77074 -12.69482 -12.65097 -12.43463 -12.33943 -12.18859 -12.09220 -11.81113 -11.75613 -11.36413 -11.30850 -11.12713 -10.80440 -10.28906 -9.99782 -9.90143 -9.63081 -9.27508 -9.26896 -9.12148 -8.72459 -8.48802 -7.69623 -7.38452 -7.16303 -4.72164 2.33215 2.53112 2.56517 2.71416 3.00694 3.49056 3.54797 3.69144 3.92400 4.05110 4.38391 4.42871 4.60717 4.68585 4.70488 4.77983 4.84669 4.95020 5.16459 5.19451 5.31988 5.37678 5.46562 5.50964 5.54525 5.55031 5.58589 5.69049 5.73853 5.89989 6.04831 6.11904 6.17379 6.21153 6.38918 6.48152 6.59293 6.73742 6.81304 7.22232 7.33929 7.35263 7.48935 7.68488 7.80950 7.90235 8.12162 8.21943 8.38351 8.67851 8.77429 9.46609 10.04328 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.002887 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.092298 B = 9695.582571 C =10452.759121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.616 5.616 3 C 0.117 3.883 4 C 0.497 3.503 5 O -0.519 6.519 6 N -0.727 5.727 7 C 0.169 3.831 8 C -0.162 4.162 9 C -0.154 4.154 10 C -0.165 4.165 11 C 0.719 3.281 12 O -0.562 6.562 13 N -0.662 5.662 14 C 0.402 3.598 15 C -0.310 4.310 16 C -0.035 4.035 17 C -0.279 4.279 18 C 0.274 3.726 19 C -0.478 4.478 20 H 0.083 0.917 21 C 0.043 3.957 22 N -0.808 5.808 23 Si 1.153 2.847 24 H -0.333 1.333 25 H -0.280 1.280 26 H -0.295 1.295 27 N -0.600 5.600 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.398 0.602 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.403 0.597 44 H 0.147 0.853 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.314 25.601 -5.503 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.353 5.353 3 C -0.011 4.011 4 C 0.282 3.718 5 O -0.393 6.393 6 N -0.382 5.382 7 C 0.084 3.916 8 C -0.220 4.220 9 C -0.212 4.212 10 C -0.223 4.223 11 C 0.421 3.579 12 O -0.438 6.438 13 N -0.310 5.310 14 C 0.171 3.829 15 C -0.335 4.335 16 C -0.059 4.059 17 C -0.302 4.302 18 C 0.150 3.850 19 C -0.510 4.510 20 H 0.101 0.899 21 C -0.177 4.177 22 N -0.430 5.430 23 Si 0.988 3.012 24 H -0.267 1.267 25 H -0.208 1.208 26 H -0.223 1.223 27 N -0.326 5.326 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.232 0.768 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.240 0.760 44 H 0.164 0.836 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.596 25.704 -5.796 26.398 hybrid contribution 2.132 -0.731 0.024 2.254 sum 3.728 24.974 -5.772 25.902 Atomic orbital electron populations 1.21790 0.79089 1.03546 1.01907 1.46507 1.06484 1.03742 1.78544 1.21126 1.00236 0.85858 0.93893 1.21352 0.77538 0.80445 0.92494 1.90670 1.49915 1.52985 1.45743 1.46161 1.59303 1.24430 1.08271 1.20311 0.95464 0.94205 0.81640 1.22214 0.96731 1.03304 0.99797 1.22084 1.00224 0.95686 1.03191 1.22224 0.99843 1.00539 0.99663 1.15533 0.85071 0.79894 0.77424 1.90788 1.11219 1.85162 1.56604 1.42387 1.10360 1.03501 1.74782 1.17822 0.88978 0.83740 0.92383 1.21754 0.94519 1.00138 1.17066 1.20949 0.97840 0.92455 0.94705 1.21588 0.96283 0.98217 1.14101 1.18260 0.89793 0.88798 0.88114 1.20695 0.95352 0.96173 1.38793 0.89895 1.27747 0.96050 1.04869 0.89065 1.70645 1.41500 1.02975 1.27924 0.81880 0.69598 0.72293 0.77393 1.26680 1.20754 1.22286 1.65936 1.38703 0.99519 1.28433 0.91973 0.90682 0.91147 0.87507 0.86634 0.76806 0.92884 0.92044 0.90300 0.91896 0.90943 0.92030 0.90189 0.92110 0.92649 0.76049 0.83560 0.87675 0.87745 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.24 59.85 0.61 1.43 16 2 N -0.62 -8.27 2.36 -188.75 -0.45 -8.72 16 3 C 0.12 1.16 5.89 -5.19 -0.03 1.13 16 4 C 0.50 5.62 7.32 -10.99 -0.08 5.54 16 5 O -0.52 -8.01 12.64 5.56 0.07 -7.94 16 6 N -0.73 -5.83 5.11 -47.61 -0.24 -6.07 16 7 C 0.17 1.39 1.06 -131.82 -0.14 1.25 16 8 C -0.16 -1.40 8.40 37.16 0.31 -1.09 16 9 C -0.15 -0.82 8.59 37.16 0.32 -0.50 16 10 C -0.16 -1.68 8.40 37.16 0.31 -1.37 16 11 C 0.72 13.30 8.17 -86.92 -0.71 12.59 16 12 O -0.56 -11.80 12.58 5.31 0.07 -11.73 16 13 N -0.66 -13.43 5.29 -15.79 -0.08 -13.51 16 14 C 0.40 9.74 7.51 -154.99 -1.16 8.58 16 15 C -0.31 -7.40 8.89 -38.89 -0.35 -7.74 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.28 -6.91 9.83 -38.66 -0.38 -7.29 16 18 C 0.27 7.44 6.40 -85.00 -0.54 6.90 16 19 C -0.48 -13.33 9.57 -37.74 -0.36 -13.70 16 20 H 0.08 2.30 8.05 -52.48 -0.42 1.88 16 21 C 0.04 1.20 5.52 -17.35 -0.10 1.11 16 22 N -0.81 -22.36 13.65 55.55 0.76 -21.60 16 23 Si 1.15 28.34 25.61 -169.99 -4.35 23.98 16 24 H -0.33 -8.04 7.11 56.52 0.40 -7.64 16 25 H -0.28 -6.75 6.60 56.52 0.37 -6.38 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 N -0.60 -15.75 4.54 -10.26 -0.05 -15.80 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 30 H 0.07 0.78 6.31 -51.93 -0.33 0.45 16 31 H 0.11 0.61 8.07 -51.93 -0.42 0.19 16 32 H 0.12 1.18 7.42 -51.93 -0.39 0.80 16 33 H 0.40 1.95 8.47 -40.82 -0.35 1.60 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.92 6.17 -51.93 -0.32 0.60 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.08 1.10 6.17 -51.93 -0.32 0.78 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.40 7.30 6.52 -40.82 -0.27 7.04 16 44 H 0.15 3.49 5.17 -52.92 -0.27 3.22 16 45 H 0.11 2.06 8.06 -52.48 -0.42 1.64 16 46 H 0.10 2.40 8.06 -52.48 -0.42 1.98 16 47 H 0.28 7.48 8.72 -40.82 -0.36 7.12 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -35.18 378.93 -8.17 -43.36 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.91 Total: 6.69 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -2.70 Total: 5.63 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: -0.06 Total: -65.70 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.14 Total: -19.66 kcal Atomic # 14 Polarization: 28.34 SS G_CDS: -4.35 Total: 23.98 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.18 -8.17 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881155815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.731 kcal (2) G-P(sol) polarization free energy of solvation -35.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds