Wall clock time and date at job start Tue Mar 31 2020 18:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99791 * 2 1 4 4 C 1.50702 * 109.47150 * 270.00123 * 3 2 1 5 5 O 1.21281 * 120.00051 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99671 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99874 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.46887 * 60.00211 * 7 6 4 9 9 C 1.53000 * 109.46958 * 180.02562 * 7 6 4 10 10 C 1.53000 * 109.47190 * 300.00231 * 7 6 4 11 11 C 1.34777 * 120.00293 * 180.02562 * 2 1 3 12 12 O 1.21568 * 120.00237 * 179.97438 * 11 2 1 13 13 N 1.34773 * 119.99662 * 0.02562 * 11 2 1 14 14 C 1.39250 * 119.99978 * 183.66124 * 13 11 2 15 15 C 1.39689 * 119.57221 * 339.03991 * 14 13 11 16 16 C 1.38640 * 119.49200 * 180.02562 * 15 14 13 17 17 C 1.38350 * 118.67474 * 359.74168 * 16 15 14 18 18 C 1.40577 * 119.13030 * 0.50004 * 17 16 15 19 19 C 1.41329 * 119.78722 * 179.77062 * 18 17 16 20 20 H 1.08004 * 120.00229 * 4.86671 * 19 18 17 21 21 C 1.40026 * 119.99925 * 184.86791 * 19 18 17 22 22 N 1.30741 * 120.00184 * 184.81816 * 21 19 18 23 23 Si 1.86802 * 120.00024 * 4.81588 * 21 19 18 24 24 H 1.48501 * 109.47292 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47136 * 300.00002 * 23 21 19 26 26 H 1.48503 * 109.47143 * 59.99811 * 23 21 19 27 27 N 1.31900 * 119.57734 * 159.06345 * 14 13 11 28 28 H 1.08992 * 109.47159 * 269.99709 * 1 2 3 29 29 H 1.09000 * 109.47494 * 30.00044 * 1 2 3 30 30 H 1.09001 * 109.46870 * 149.99408 * 1 2 3 31 31 H 1.08997 * 109.47092 * 30.00389 * 3 2 1 32 32 H 1.08996 * 109.46868 * 149.99875 * 3 2 1 33 33 H 0.97006 * 120.00431 * 0.02562 * 6 4 3 34 34 H 1.09004 * 109.47278 * 59.99967 * 8 7 6 35 35 H 1.09003 * 109.46778 * 179.97438 * 8 7 6 36 36 H 1.09001 * 109.47411 * 300.00011 * 8 7 6 37 37 H 1.08994 * 109.47730 * 60.00539 * 9 7 6 38 38 H 1.09005 * 109.47101 * 180.02562 * 9 7 6 39 39 H 1.09004 * 109.46972 * 299.99889 * 9 7 6 40 40 H 1.09001 * 109.46951 * 60.00085 * 10 7 6 41 41 H 1.09000 * 109.46923 * 179.97438 * 10 7 6 42 42 H 1.08996 * 109.47114 * 300.00110 * 10 7 6 43 43 H 0.97001 * 120.00583 * 3.65442 * 13 11 2 44 44 H 1.08002 * 120.25160 * 359.97438 * 15 14 13 45 45 H 1.08003 * 120.66512 * 179.97438 * 16 15 14 46 46 H 1.08005 * 120.43675 * 180.24671 * 17 16 15 47 47 H 0.97001 * 120.00183 * 354.98460 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 8 2.0550 1.0211 -2.3427 6 7 3.1106 2.8517 -1.6670 7 6 3.3553 3.2744 -3.0482 8 6 2.0187 3.4565 -3.7702 9 6 4.1201 4.5995 -3.0481 10 6 4.1831 2.2083 -3.7688 11 6 2.1389 -1.1672 -0.0005 12 8 3.3546 -1.1672 -0.0010 13 7 1.4651 -2.3343 -0.0016 14 6 2.1592 -3.5391 0.0749 15 6 3.5085 -3.5813 -0.2840 16 6 4.1978 -4.7818 -0.2077 17 6 3.5235 -5.9078 0.2300 18 6 2.1641 -5.8017 0.5719 19 6 1.4606 -6.9442 1.0160 20 1 1.9848 -7.8763 1.1671 21 6 0.0839 -6.8676 1.2601 22 7 -0.5495 -7.8962 1.7602 23 14 -0.8476 -5.2958 0.8713 24 1 -2.2807 -5.4708 1.2190 25 1 -0.2800 -4.1752 1.6634 26 1 -0.7226 -4.9916 -0.5768 27 7 1.5340 -4.6258 0.4848 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5139 32 1 3.1498 1.1385 0.5138 33 1 3.4258 3.3976 -0.9297 34 1 1.4289 4.2160 -3.2568 35 1 2.2007 3.7714 -4.7977 36 1 1.4741 2.5122 -3.7702 37 1 5.0724 4.4694 -2.5340 38 1 4.3018 4.9143 -4.0758 39 1 3.5307 5.3592 -2.5347 40 1 3.6385 1.2641 -3.7689 41 1 4.3647 2.5227 -4.7966 42 1 5.1352 2.0786 -3.2545 43 1 0.4966 -2.3352 -0.0555 44 1 4.0107 -2.6858 -0.6191 45 1 5.2413 -4.8361 -0.4809 46 1 4.0338 -6.8568 0.3041 47 1 -0.0820 -8.7355 1.8942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881155815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:40 Heat of formation + Delta-G solvation = -46.183435 kcal Electronic energy + Delta-G solvation = -29323.791775 eV Core-core repulsion = 25313.054039 eV Total energy + Delta-G solvation = -4010.737736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.07326 -41.02939 -40.04907 -37.66588 -36.48268 -36.30616 -35.33365 -33.24002 -32.98784 -31.40298 -29.34138 -28.24094 -28.20357 -27.62638 -26.99033 -24.10901 -23.54672 -22.32645 -21.10690 -20.55145 -20.27522 -19.55552 -18.46918 -18.33731 -17.23230 -16.92390 -16.83089 -16.57307 -16.09721 -16.04337 -15.65163 -15.16179 -15.10018 -14.93725 -14.72716 -14.53018 -14.46836 -14.26526 -13.97087 -13.77775 -13.50693 -13.27256 -13.21395 -13.01830 -12.87621 -12.75683 -12.74958 -12.45635 -12.21759 -12.08224 -11.99100 -11.75257 -11.65877 -11.15404 -10.89739 -10.85106 -10.41709 -10.03451 -9.80598 -9.70332 -9.32267 -9.13266 -6.81656 0.57632 0.74142 1.26701 1.55308 1.67431 1.69830 1.91281 2.03486 2.33314 2.46331 2.67407 2.72241 3.54838 3.73141 3.97508 4.00237 4.05593 4.09663 4.15983 4.18312 4.34292 4.43428 4.61816 4.65407 4.68794 4.69207 4.71444 4.79540 4.81394 4.83049 4.86148 4.96162 5.00686 5.21537 5.23202 5.34532 5.35952 5.38965 5.42134 5.43723 5.56166 5.67654 5.79084 5.88387 5.99305 6.40651 6.53229 6.66650 6.71349 7.29503 7.37821 7.49728 7.94845 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.002887 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.092298 B = 9695.582571 C =10452.759121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.607 5.607 3 C 0.112 3.888 4 C 0.493 3.507 5 O -0.566 6.566 6 N -0.711 5.711 7 C 0.166 3.834 8 C -0.158 4.158 9 C -0.146 4.146 10 C -0.163 4.163 11 C 0.712 3.288 12 O -0.592 6.592 13 N -0.664 5.664 14 C 0.393 3.607 15 C -0.310 4.310 16 C -0.027 4.027 17 C -0.293 4.293 18 C 0.258 3.742 19 C -0.507 4.507 20 H 0.070 0.930 21 C 0.014 3.986 22 N -0.828 5.828 23 Si 1.185 2.815 24 H -0.326 1.326 25 H -0.274 1.274 26 H -0.297 1.297 27 N -0.612 5.612 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.160 0.840 32 H 0.114 0.886 33 H 0.416 0.584 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.411 0.589 44 H 0.151 0.849 45 H 0.143 0.857 46 H 0.116 0.884 47 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 29.507 -5.468 30.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.342 5.342 3 C -0.014 4.014 4 C 0.278 3.722 5 O -0.444 6.444 6 N -0.366 5.366 7 C 0.080 3.920 8 C -0.216 4.216 9 C -0.204 4.204 10 C -0.221 4.221 11 C 0.414 3.586 12 O -0.471 6.471 13 N -0.313 5.313 14 C 0.161 3.839 15 C -0.334 4.334 16 C -0.052 4.052 17 C -0.315 4.315 18 C 0.133 3.867 19 C -0.539 4.539 20 H 0.088 0.912 21 C -0.202 4.202 22 N -0.451 5.451 23 Si 1.017 2.983 24 H -0.260 1.260 25 H -0.202 1.202 26 H -0.225 1.225 27 N -0.338 5.338 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.177 0.823 32 H 0.132 0.868 33 H 0.253 0.747 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.250 0.750 44 H 0.168 0.832 45 H 0.161 0.839 46 H 0.134 0.866 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.981 29.701 -5.740 30.316 hybrid contribution 2.146 -1.756 -0.076 2.773 sum 4.127 27.946 -5.817 28.841 Atomic orbital electron populations 1.22068 0.76993 1.04304 1.03648 1.46611 1.07898 1.03118 1.76558 1.21511 1.01022 0.85333 0.93545 1.21605 0.77313 0.80782 0.92481 1.90675 1.52065 1.54577 1.47097 1.46045 1.57863 1.23583 1.09083 1.20406 0.95321 0.94989 0.81262 1.22151 0.96732 1.01887 1.00805 1.22031 1.00228 0.93967 1.04158 1.22193 0.99415 0.99480 1.00997 1.15769 0.84919 0.80600 0.77323 1.90737 1.12581 1.85752 1.58047 1.42387 1.10834 1.03025 1.75017 1.18126 0.89600 0.84499 0.91678 1.22043 0.94637 1.00629 1.16114 1.21339 0.99508 0.91319 0.92993 1.21760 0.95676 0.99531 1.14544 1.18468 0.90959 0.89003 0.88314 1.20700 0.95849 0.96340 1.41049 0.91212 1.28546 0.96623 1.06308 0.88749 1.70665 1.41613 1.03259 1.29576 0.81479 0.69184 0.70553 0.77064 1.25956 1.20188 1.22518 1.65948 1.39190 0.99816 1.28867 0.89629 0.88100 0.92327 0.82297 0.86766 0.74682 0.91465 0.91088 0.93630 0.91278 0.90161 0.90285 0.94210 0.90811 0.92905 0.75027 0.83213 0.83937 0.86567 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.28 10.24 127.77 1.31 2.59 16 2 N -0.61 -15.00 2.36 -869.34 -2.05 -17.05 16 3 C 0.11 1.91 5.89 85.63 0.50 2.41 16 4 C 0.49 10.30 7.32 87.66 0.64 10.94 16 5 O -0.57 -17.37 12.64 -3.03 -0.04 -17.41 16 6 N -0.71 -9.66 5.11 -422.92 -2.16 -11.82 16 7 C 0.17 2.38 1.06 3.60 0.00 2.38 16 8 C -0.16 -2.48 8.40 71.98 0.60 -1.87 16 9 C -0.15 -1.06 8.59 71.98 0.62 -0.44 16 10 C -0.16 -3.24 8.40 71.98 0.60 -2.64 16 11 C 0.71 25.55 8.17 179.06 1.46 27.01 16 12 O -0.59 -24.42 12.58 -3.93 -0.05 -24.47 16 13 N -0.66 -26.36 5.29 -322.13 -1.70 -28.06 16 14 C 0.39 18.83 7.51 133.26 1.00 19.83 16 15 C -0.31 -14.49 8.89 22.72 0.20 -14.29 16 16 C -0.03 -1.22 10.15 22.39 0.23 -0.99 16 17 C -0.29 -14.36 9.83 22.87 0.22 -14.14 16 18 C 0.26 14.09 6.40 40.19 0.26 14.35 16 19 C -0.51 -29.01 9.57 23.46 0.22 -28.78 16 20 H 0.07 4.03 8.05 -2.91 -0.02 4.01 16 21 C 0.01 0.81 5.52 85.29 0.47 1.28 16 22 N -0.83 -46.76 13.65 21.84 0.30 -46.46 16 23 Si 1.18 57.73 25.61 68.60 1.76 59.49 16 24 H -0.33 -15.34 7.11 99.48 0.71 -14.64 16 25 H -0.27 -12.98 6.60 99.48 0.66 -12.33 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 27 N -0.61 -32.04 4.54 -186.36 -0.85 -32.89 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.30 8.07 -2.39 -0.02 1.28 16 30 H 0.06 1.20 6.31 -2.39 -0.02 1.19 16 31 H 0.16 1.03 8.07 -2.39 -0.02 1.01 16 32 H 0.11 2.05 7.42 -2.39 -0.02 2.03 16 33 H 0.42 2.61 8.47 -92.70 -0.79 1.82 16 34 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.04 1.05 6.17 -2.39 -0.01 1.03 16 37 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 40 H 0.04 1.13 6.17 -2.39 -0.01 1.11 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.41 14.54 6.52 -92.71 -0.60 13.94 16 44 H 0.15 7.01 5.17 -9.77 -0.05 6.96 16 45 H 0.14 5.18 8.06 -2.91 -0.02 5.16 16 46 H 0.12 5.31 8.06 -2.91 -0.02 5.28 16 47 H 0.28 15.36 8.72 -92.71 -0.81 14.55 16 Total: -1.00 -79.03 378.93 3.06 -75.97 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.51 Total: 25.06 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 8.36 Total: 17.64 kcal Atomic # 7 Polarization: -129.82 SS G_CDS: -6.46 Total: -136.28 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -0.09 Total: -41.88 kcal Atomic # 14 Polarization: 57.73 SS G_CDS: 1.76 Total: 59.49 kcal Total: -79.03 3.06 -75.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881155815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.789 kcal (2) G-P(sol) polarization free energy of solvation -79.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds