Wall clock time and date at job start Tue Mar 31 2020 19:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47046 * 2 1 4 4 H 1.08995 * 109.59791 * 332.08714 * 3 2 1 5 5 C 1.51336 * 109.59944 * 211.61076 * 3 2 1 6 6 O 1.21276 * 120.35371 * 128.52391 * 5 3 2 7 7 N 1.34248 * 119.29729 * 308.50577 * 5 3 2 8 8 C 1.46704 * 120.37745 * 357.15997 * 7 5 3 9 9 C 1.53040 * 109.06817 * 288.68956 * 8 7 5 10 10 C 1.52018 * 110.22649 * 88.53866 * 9 8 7 11 11 N 1.46066 * 111.78782 * 297.55682 * 10 9 8 12 12 C 1.34777 * 119.80467 * 242.92866 * 11 10 9 13 13 O 1.21614 * 119.99624 * 185.72273 * 12 11 10 14 14 C 1.47423 * 120.00412 * 5.72571 * 12 11 10 15 15 C 1.41290 * 126.41157 * 52.58685 * 14 12 11 16 16 N 1.30452 * 108.02248 * 180.02562 * 15 14 12 17 17 N 1.39938 * 108.89263 * 359.78212 * 16 15 14 18 18 C 1.46500 * 125.75129 * 180.26291 * 17 16 15 19 19 C 1.50705 * 109.46935 * 270.12695 * 18 17 16 20 20 H 1.08002 * 119.99861 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00114 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99850 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99971 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47098 * 59.99891 * 23 21 19 25 25 H 1.48503 * 109.47247 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46860 * 299.99669 * 23 21 19 27 27 C 1.34248 * 108.49526 * 0.36677 * 17 16 15 28 28 C 1.50707 * 126.29592 * 179.89964 * 27 17 16 29 29 H 1.09000 * 109.46994 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47075 * 300.00407 * 1 2 3 31 31 H 1.09001 * 109.46719 * 60.00203 * 1 2 3 32 32 H 1.08996 * 109.47637 * 239.99357 * 2 1 3 33 33 H 1.09007 * 109.47157 * 119.99747 * 2 1 3 34 34 H 0.97003 * 119.81069 * 177.13305 * 7 5 3 35 35 H 1.09003 * 109.53588 * 48.56814 * 8 7 5 36 36 H 1.08996 * 109.53638 * 168.81297 * 8 7 5 37 37 H 1.08996 * 109.34993 * 208.88350 * 9 8 7 38 38 H 1.09000 * 109.35571 * 328.59890 * 9 8 7 39 39 H 1.08996 * 108.96094 * 176.93174 * 10 9 8 40 40 H 1.08996 * 108.89496 * 58.14280 * 10 9 8 41 41 H 1.07999 * 125.99406 * 0.02562 * 15 14 12 42 42 H 1.09005 * 109.47682 * 30.12418 * 18 17 16 43 43 H 1.09004 * 109.47702 * 150.12927 * 18 17 16 44 44 H 0.96999 * 119.99692 * 180.02562 * 22 21 19 45 45 H 1.08992 * 109.47152 * 269.69725 * 28 27 17 46 46 H 1.08994 * 109.47272 * 149.68809 * 28 27 17 47 47 H 1.09007 * 109.46483 * 29.69349 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3064 2.0897 -0.4807 5 6 3.3539 1.5165 -0.7473 6 8 3.5105 2.3304 -1.6325 7 7 4.3444 0.6717 -0.4196 8 6 4.1782 -0.2709 0.6923 9 6 4.2027 0.5035 2.0121 10 6 2.8012 0.9662 2.3760 11 7 2.2586 1.8871 1.3804 12 6 1.9624 3.1543 1.7311 13 8 1.4147 3.8931 0.9354 14 6 2.3022 3.6448 3.0792 15 6 3.5692 3.5787 3.7010 16 7 3.4659 4.1150 4.8857 17 7 2.1485 4.5479 5.0737 18 6 1.6275 5.2083 6.2732 19 6 1.1143 4.1688 7.2361 20 1 1.1710 3.1210 6.9803 21 6 0.5724 4.5553 8.4435 22 7 0.5039 5.8312 8.7552 23 14 -0.0631 3.2668 9.6374 24 1 1.0453 2.3545 10.0172 25 1 -0.5925 3.9362 10.8527 26 1 -1.1479 2.4855 8.9910 27 6 1.4421 4.2541 3.9706 28 6 -0.0198 4.5421 3.7444 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.1747 0.6843 -0.9210 35 1 3.2246 -0.7891 0.5913 36 1 4.9917 -0.9962 0.6800 37 1 4.5883 -0.1411 2.8019 38 1 4.8501 1.3742 1.9081 39 1 2.8336 1.4667 3.3438 40 1 2.1496 0.0955 2.4483 41 1 4.4661 3.1580 3.2709 42 1 2.4243 5.7812 6.7477 43 1 0.8143 5.8786 5.9948 44 1 0.1230 6.1031 9.6048 45 1 -0.6140 3.6938 4.0838 46 1 -0.1972 4.7081 2.6818 47 1 -0.3053 5.4329 4.3039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886510425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:49 Heat of formation + Delta-G solvation = 15.148355 kcal Electronic energy + Delta-G solvation = -30254.318677 eV Core-core repulsion = 26246.240487 eV Total energy + Delta-G solvation = -4008.078190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36520 -40.52791 -38.56342 -37.11191 -34.90504 -34.09094 -33.56426 -32.13441 -31.33627 -31.16688 -28.16822 -26.97862 -26.54554 -26.01566 -23.60292 -23.52602 -22.22952 -20.84152 -20.35710 -19.59154 -18.63661 -17.49779 -17.37854 -16.90264 -16.64735 -16.12966 -15.39960 -15.05692 -14.67715 -14.49018 -14.42072 -14.27805 -14.11200 -13.95782 -13.57266 -13.36462 -13.17466 -12.87892 -12.64509 -12.52005 -12.32324 -12.21326 -12.02031 -11.88003 -11.70597 -11.55218 -11.43139 -11.36850 -11.15934 -10.91939 -10.73746 -10.41537 -10.27206 -10.18647 -9.97096 -9.51485 -9.28410 -8.73961 -8.67893 -8.61324 -7.88973 -6.36286 -4.44708 2.13437 2.38015 2.76011 3.00705 3.13046 3.15851 3.21010 3.22632 3.36332 3.49386 4.17846 4.20476 4.43274 4.46220 4.58071 4.70621 4.89886 4.96629 4.99782 5.04166 5.11116 5.16344 5.24575 5.35005 5.44714 5.48923 5.57709 5.62295 5.66664 5.67009 5.74823 5.89939 5.97656 5.99656 6.01567 6.30177 6.41890 6.49584 6.60512 6.77057 6.89440 6.99196 7.12905 7.42005 7.52291 7.74414 7.76228 8.04269 8.34656 8.41408 8.60085 9.22092 10.71861 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.003182 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.964484 B = 8798.217880 C = 8918.369125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.144 4.144 3 C 0.130 3.870 4 H 0.128 0.872 5 C 0.512 3.488 6 O -0.534 6.534 7 N -0.725 5.725 8 C 0.081 3.919 9 C -0.162 4.162 10 C 0.096 3.904 11 N -0.601 5.601 12 C 0.610 3.390 13 O -0.534 6.534 14 C -0.325 4.325 15 C 0.058 3.942 16 N -0.293 5.293 17 N -0.311 5.311 18 C 0.252 3.748 19 C -0.540 4.540 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.889 5.889 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.151 3.849 28 C -0.095 4.095 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.398 0.602 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.173 0.827 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.270 0.730 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -15.629 -13.940 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.181 4.181 3 C 0.023 3.977 4 H 0.146 0.854 5 C 0.296 3.704 6 O -0.409 6.409 7 N -0.379 5.379 8 C -0.042 4.042 9 C -0.202 4.202 10 C -0.026 4.026 11 N -0.336 5.336 12 C 0.399 3.601 13 O -0.410 6.410 14 C -0.341 4.341 15 C -0.128 4.128 16 N -0.113 5.113 17 N -0.088 5.088 18 C 0.134 3.866 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.526 5.526 23 Si 0.735 3.265 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 C 0.014 3.986 28 C -0.154 4.154 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.234 0.766 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.091 0.909 41 H 0.190 0.810 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.530 -14.242 -13.324 19.820 hybrid contribution -0.087 -0.922 -0.014 0.927 sum 3.442 -15.164 -13.338 20.487 Atomic orbital electron populations 1.21809 0.94230 1.02045 1.02833 1.22278 0.97710 0.94606 1.03532 1.21525 0.94566 0.98166 0.83468 0.85383 1.21247 0.86452 0.79673 0.83002 1.90763 1.82015 1.36022 1.32077 1.46012 1.18123 1.38571 1.35147 1.22311 1.04671 0.91660 0.85586 1.22338 0.98251 1.01639 0.97929 1.21462 0.93606 0.94202 0.93374 1.47685 1.65512 1.11814 1.08609 1.17590 0.76375 0.79992 0.86097 1.90747 1.42255 1.55403 1.52600 1.19502 0.95605 1.21075 0.97923 1.23626 0.96863 1.00365 0.91977 1.77155 0.98197 1.18344 1.17617 1.49295 1.05192 1.41006 1.13346 1.19844 0.95371 0.93089 0.78263 1.21190 1.41734 0.93157 1.01794 0.91715 1.24927 0.95186 0.95858 0.97679 1.69905 1.44100 1.14801 1.23814 0.86386 0.79255 0.81017 0.79871 1.19900 1.20883 1.19897 1.21290 0.95185 0.94872 0.87209 1.20521 0.88150 1.03272 1.03414 0.92175 0.91961 0.92239 0.90479 0.88806 0.76645 0.88377 0.89549 0.88988 0.90532 0.87673 0.90926 0.81010 0.92535 0.92622 0.92024 0.90005 0.89627 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.73 37.16 0.36 -0.83 16 2 C -0.14 -1.11 3.93 -26.73 -0.11 -1.21 16 3 C 0.13 1.53 2.49 -68.68 -0.17 1.36 16 4 H 0.13 1.83 6.78 -51.93 -0.35 1.48 16 5 C 0.51 6.59 6.85 -10.91 -0.07 6.51 16 6 O -0.53 -9.39 17.95 5.56 0.10 -9.29 16 7 N -0.72 -6.27 5.29 -60.03 -0.32 -6.59 16 8 C 0.08 0.46 6.34 -3.91 -0.02 0.43 16 9 C -0.16 -1.15 5.91 -27.21 -0.16 -1.31 16 10 C 0.10 0.93 5.12 -4.78 -0.02 0.91 16 11 N -0.60 -7.61 2.59 -169.14 -0.44 -8.05 16 12 C 0.61 10.32 7.25 -12.52 -0.09 10.23 16 13 O -0.53 -10.73 15.72 5.27 0.08 -10.65 16 14 C -0.33 -5.84 4.73 -105.07 -0.50 -6.34 16 15 C 0.06 1.00 10.05 -16.98 -0.17 0.83 16 16 N -0.29 -6.14 12.50 30.86 0.39 -5.76 16 17 N -0.31 -6.82 3.56 -57.77 -0.21 -7.03 16 18 C 0.25 6.12 5.97 -5.19 -0.03 6.09 16 19 C -0.54 -14.02 9.39 -34.44 -0.32 -14.34 16 20 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 21 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -24.14 13.29 55.43 0.74 -23.41 16 23 Si 0.91 20.08 29.54 -169.99 -5.02 15.05 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 27 C 0.15 2.96 7.01 -81.60 -0.57 2.38 16 28 C -0.10 -1.63 9.93 36.01 0.36 -1.27 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.08 0.52 7.69 -51.93 -0.40 0.12 16 33 H 0.09 0.58 3.44 -51.93 -0.18 0.40 16 34 H 0.40 3.03 8.93 -40.82 -0.36 2.66 16 35 H 0.10 0.48 3.65 -51.93 -0.19 0.29 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.67 7.57 -51.93 -0.39 0.28 16 39 H 0.11 1.25 5.05 -51.93 -0.26 0.99 16 40 H 0.07 0.55 6.35 -51.93 -0.33 0.22 16 41 H 0.17 2.38 7.60 -52.49 -0.40 1.98 16 42 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.06 1.35 7.01 -51.93 -0.36 0.99 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.08 1.40 7.23 -51.93 -0.38 1.03 16 47 H 0.08 1.36 7.04 -51.93 -0.37 0.99 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -33.47 373.34 -7.15 -40.62 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.48 Total: 4.36 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.62 Total: 5.11 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.16 Total: -50.84 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.18 Total: -19.94 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.47 -7.15 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886510425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.766 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds