Wall clock time and date at job start Tue Mar 31 2020 19:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47046 * 2 1 4 4 H 1.08995 * 109.59791 * 332.08714 * 3 2 1 5 5 C 1.51336 * 109.59944 * 211.61076 * 3 2 1 6 6 O 1.21276 * 120.35371 * 128.52391 * 5 3 2 7 7 N 1.34248 * 119.29729 * 308.50577 * 5 3 2 8 8 C 1.46704 * 120.37745 * 357.15997 * 7 5 3 9 9 C 1.53040 * 109.06817 * 288.68956 * 8 7 5 10 10 C 1.52018 * 110.22649 * 88.53866 * 9 8 7 11 11 N 1.46066 * 111.78782 * 297.55682 * 10 9 8 12 12 C 1.34777 * 119.80467 * 242.92866 * 11 10 9 13 13 O 1.21614 * 119.99624 * 185.72273 * 12 11 10 14 14 C 1.47423 * 120.00412 * 5.72571 * 12 11 10 15 15 C 1.41290 * 126.41157 * 52.58685 * 14 12 11 16 16 N 1.30452 * 108.02248 * 180.02562 * 15 14 12 17 17 N 1.39938 * 108.89263 * 359.78212 * 16 15 14 18 18 C 1.46500 * 125.75129 * 180.26291 * 17 16 15 19 19 C 1.50705 * 109.46935 * 270.12695 * 18 17 16 20 20 H 1.08002 * 119.99861 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00114 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99850 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99971 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47098 * 59.99891 * 23 21 19 25 25 H 1.48503 * 109.47247 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46860 * 299.99669 * 23 21 19 27 27 C 1.34248 * 108.49526 * 0.36677 * 17 16 15 28 28 C 1.50707 * 126.29592 * 179.89964 * 27 17 16 29 29 H 1.09000 * 109.46994 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47075 * 300.00407 * 1 2 3 31 31 H 1.09001 * 109.46719 * 60.00203 * 1 2 3 32 32 H 1.08996 * 109.47637 * 239.99357 * 2 1 3 33 33 H 1.09007 * 109.47157 * 119.99747 * 2 1 3 34 34 H 0.97003 * 119.81069 * 177.13305 * 7 5 3 35 35 H 1.09003 * 109.53588 * 48.56814 * 8 7 5 36 36 H 1.08996 * 109.53638 * 168.81297 * 8 7 5 37 37 H 1.08996 * 109.34993 * 208.88350 * 9 8 7 38 38 H 1.09000 * 109.35571 * 328.59890 * 9 8 7 39 39 H 1.08996 * 108.96094 * 176.93174 * 10 9 8 40 40 H 1.08996 * 108.89496 * 58.14280 * 10 9 8 41 41 H 1.07999 * 125.99406 * 0.02562 * 15 14 12 42 42 H 1.09005 * 109.47682 * 30.12418 * 18 17 16 43 43 H 1.09004 * 109.47702 * 150.12927 * 18 17 16 44 44 H 0.96999 * 119.99692 * 180.02562 * 22 21 19 45 45 H 1.08992 * 109.47152 * 269.69725 * 28 27 17 46 46 H 1.08994 * 109.47272 * 149.68809 * 28 27 17 47 47 H 1.09007 * 109.46483 * 29.69349 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3064 2.0897 -0.4807 5 6 3.3539 1.5165 -0.7473 6 8 3.5105 2.3304 -1.6325 7 7 4.3444 0.6717 -0.4196 8 6 4.1782 -0.2709 0.6923 9 6 4.2027 0.5035 2.0121 10 6 2.8012 0.9662 2.3760 11 7 2.2586 1.8871 1.3804 12 6 1.9624 3.1543 1.7311 13 8 1.4147 3.8931 0.9354 14 6 2.3022 3.6448 3.0792 15 6 3.5692 3.5787 3.7010 16 7 3.4659 4.1150 4.8857 17 7 2.1485 4.5479 5.0737 18 6 1.6275 5.2083 6.2732 19 6 1.1143 4.1688 7.2361 20 1 1.1710 3.1210 6.9803 21 6 0.5724 4.5553 8.4435 22 7 0.5039 5.8312 8.7552 23 14 -0.0631 3.2668 9.6374 24 1 1.0453 2.3545 10.0172 25 1 -0.5925 3.9362 10.8527 26 1 -1.1479 2.4855 8.9910 27 6 1.4421 4.2541 3.9706 28 6 -0.0198 4.5421 3.7444 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.1747 0.6843 -0.9210 35 1 3.2246 -0.7891 0.5913 36 1 4.9917 -0.9962 0.6800 37 1 4.5883 -0.1411 2.8019 38 1 4.8501 1.3742 1.9081 39 1 2.8336 1.4667 3.3438 40 1 2.1496 0.0955 2.4483 41 1 4.4661 3.1580 3.2709 42 1 2.4243 5.7812 6.7477 43 1 0.8143 5.8786 5.9948 44 1 0.1230 6.1031 9.6048 45 1 -0.6140 3.6938 4.0838 46 1 -0.1972 4.7081 2.6818 47 1 -0.3053 5.4329 4.3039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886510425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:48 Heat of formation + Delta-G solvation = -8.994043 kcal Electronic energy + Delta-G solvation = -30255.365570 eV Core-core repulsion = 26246.240487 eV Total energy + Delta-G solvation = -4009.125083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.59783 -41.77018 -39.80896 -38.16379 -35.84630 -35.74856 -34.60564 -33.78093 -32.74115 -32.15272 -29.53943 -28.53011 -27.74232 -26.83416 -25.38076 -24.28233 -23.54551 -21.82120 -21.39567 -20.81653 -19.91323 -18.88001 -18.56201 -18.23673 -17.92406 -17.24034 -16.80301 -16.41506 -15.98853 -15.85672 -15.68960 -15.34310 -15.04829 -14.99353 -14.58727 -14.46631 -14.33758 -14.16801 -13.93446 -13.64573 -13.62007 -13.53086 -13.15689 -13.12933 -13.01062 -12.89424 -12.66464 -12.47214 -12.28067 -12.15558 -12.11360 -11.84019 -11.79524 -11.48534 -11.06387 -10.91635 -10.73057 -10.25930 -10.04909 -9.75637 -9.40283 -8.34535 -6.51436 0.75047 1.19780 1.35392 1.41788 1.42803 1.51114 1.67883 1.90860 2.24206 2.34050 2.35846 2.97950 3.34614 3.58685 3.69936 3.74415 3.86896 3.91453 4.03404 4.11744 4.16257 4.30968 4.42089 4.45282 4.52488 4.57859 4.62608 4.67059 4.76448 4.79867 4.89264 4.90113 4.97077 5.01374 5.05574 5.09791 5.13543 5.35328 5.38836 5.49871 5.52235 5.63244 5.76834 5.88494 6.04951 6.15385 6.28426 6.57475 6.81608 7.10564 7.16490 7.19827 8.73326 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.003182 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.964484 B = 8798.217880 C = 8918.369125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.134 4.134 3 C 0.129 3.871 4 H 0.096 0.904 5 C 0.508 3.492 6 O -0.593 6.593 7 N -0.708 5.708 8 C 0.078 3.922 9 C -0.158 4.158 10 C 0.087 3.913 11 N -0.587 5.587 12 C 0.607 3.393 13 O -0.575 6.575 14 C -0.320 4.320 15 C 0.080 3.920 16 N -0.328 5.328 17 N -0.334 5.334 18 C 0.267 3.733 19 C -0.552 4.552 20 H 0.059 0.941 21 C 0.022 3.978 22 N -0.921 5.921 23 Si 0.973 3.027 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.263 1.263 27 C 0.136 3.864 28 C -0.090 4.090 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.405 0.595 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.209 0.791 42 H 0.028 0.972 43 H 0.048 0.952 44 H 0.273 0.727 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.059 -19.718 -13.926 24.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.022 3.978 4 H 0.114 0.886 5 C 0.292 3.708 6 O -0.473 6.473 7 N -0.359 5.359 8 C -0.044 4.044 9 C -0.197 4.197 10 C -0.035 4.035 11 N -0.321 5.321 12 C 0.396 3.604 13 O -0.455 6.455 14 C -0.336 4.336 15 C -0.106 4.106 16 N -0.148 5.148 17 N -0.111 5.111 18 C 0.149 3.851 19 C -0.590 4.590 20 H 0.078 0.922 21 C -0.180 4.180 22 N -0.559 5.559 23 Si 0.797 3.203 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.188 1.188 27 C 0.001 3.999 28 C -0.148 4.148 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.242 0.758 35 H 0.131 0.869 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.225 0.775 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.113 0.887 46 H 0.108 0.892 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.208 -18.419 -13.296 23.104 hybrid contribution -0.211 0.287 -0.101 0.371 sum 3.997 -18.132 -13.397 22.896 Atomic orbital electron populations 1.21814 0.94334 1.03181 1.01604 1.22314 0.97518 0.91670 1.05554 1.21568 0.93798 1.00214 0.82225 0.88624 1.21401 0.87367 0.79602 0.82389 1.90737 1.83021 1.38720 1.34799 1.46017 1.17158 1.37502 1.35237 1.22629 1.07216 0.91183 0.83348 1.22351 0.95783 1.01780 0.99784 1.21780 0.96090 0.94177 0.91427 1.47660 1.64121 1.10678 1.09632 1.17511 0.76430 0.81211 0.85245 1.90732 1.44320 1.56972 1.53452 1.19680 0.95537 1.20275 0.98063 1.24149 0.97695 0.98206 0.90592 1.77107 0.98051 1.20047 1.19599 1.49021 1.05988 1.42677 1.13418 1.19376 0.93998 0.92708 0.79062 1.21368 1.41981 0.93089 1.02520 0.92243 1.25778 0.95136 0.97801 0.99236 1.70011 1.44791 1.16631 1.24430 0.85366 0.78842 0.78464 0.77631 1.19560 1.20361 1.18770 1.21771 0.96323 0.94878 0.86885 1.20529 0.87139 1.03507 1.03594 0.89737 0.93576 0.93258 0.88607 0.86328 0.75791 0.86915 0.85625 0.85810 0.92159 0.89805 0.87881 0.77465 0.95393 0.93445 0.91777 0.88744 0.89166 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.73 71.98 0.70 -1.36 16 2 C -0.13 -1.65 3.93 30.60 0.12 -1.53 16 3 C 0.13 2.92 2.49 44.42 0.11 3.03 16 4 H 0.10 2.85 6.78 -2.39 -0.02 2.83 16 5 C 0.51 12.56 6.85 87.94 0.60 13.16 16 6 O -0.59 -21.30 17.95 -3.02 -0.05 -21.36 16 7 N -0.71 -10.13 5.29 -462.53 -2.45 -12.58 16 8 C 0.08 0.48 6.34 86.35 0.55 1.03 16 9 C -0.16 -1.54 5.91 30.28 0.18 -1.37 16 10 C 0.09 1.40 5.12 86.14 0.44 1.84 16 11 N -0.59 -14.15 2.59 -807.30 -2.09 -16.24 16 12 C 0.61 20.63 7.25 86.66 0.63 21.25 16 13 O -0.58 -23.94 15.72 -4.07 -0.06 -24.00 16 14 C -0.32 -11.51 4.73 -20.15 -0.10 -11.60 16 15 C 0.08 2.72 10.05 85.65 0.86 3.58 16 16 N -0.33 -13.90 12.50 -56.27 -0.70 -14.61 16 17 N -0.33 -15.06 3.56 -336.68 -1.20 -16.26 16 18 C 0.27 13.55 5.97 85.63 0.51 14.06 16 19 C -0.55 -29.11 9.39 25.60 0.24 -28.87 16 20 H 0.06 3.14 7.81 -2.91 -0.02 3.11 16 21 C 0.02 1.13 5.46 84.65 0.46 1.59 16 22 N -0.92 -50.82 13.29 21.45 0.28 -50.54 16 23 Si 0.97 40.78 29.54 68.60 2.03 42.81 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 27 C 0.14 5.46 7.01 42.15 0.30 5.76 16 28 C -0.09 -3.14 9.93 71.24 0.71 -2.43 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.05 0.77 8.12 -2.39 -0.02 0.75 16 32 H 0.10 0.90 7.69 -2.39 -0.02 0.88 16 33 H 0.12 0.86 3.44 -2.38 -0.01 0.85 16 34 H 0.41 5.02 8.93 -92.71 -0.83 4.19 16 35 H 0.11 0.43 3.65 -2.39 -0.01 0.42 16 36 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.06 0.84 7.57 -2.39 -0.02 0.82 16 39 H 0.08 1.80 5.05 -2.39 -0.01 1.78 16 40 H 0.10 1.09 6.35 -2.39 -0.02 1.08 16 41 H 0.21 5.32 7.60 -2.91 -0.02 5.30 16 42 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.05 2.44 7.01 -2.39 -0.02 2.42 16 44 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 45 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.09 3.06 7.23 -2.39 -0.02 3.04 16 47 H 0.07 2.65 7.04 -2.38 -0.02 2.63 16 Total: -1.00 -77.73 373.34 2.26 -75.47 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.19 Total: 19.15 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 6.31 Total: 18.15 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -6.16 Total: -110.22 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.12 Total: -45.36 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -77.73 2.26 -75.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886510425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.479 kcal (2) G-P(sol) polarization free energy of solvation -77.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds