Wall clock time and date at job start Tue Mar 31 2020 18:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46884 * 2 1 4 4 C 1.53004 * 109.46862 * 240.00405 * 2 1 3 5 5 O 1.45191 * 109.47269 * 119.99875 * 2 1 3 6 6 C 1.34644 * 117.00155 * 60.00580 * 5 2 1 7 7 O 1.21499 * 119.99371 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00015 * 180.27693 * 6 5 2 9 9 C 1.39445 * 119.99795 * 174.62999 * 8 6 5 10 10 C 1.39390 * 120.14990 * 185.09213 * 9 8 6 11 11 C 1.38611 * 117.91509 * 179.78313 * 10 9 8 12 12 C 1.38788 * 118.02898 * 0.48388 * 11 10 9 13 13 C 1.50698 * 120.00097 * 179.76979 * 12 11 10 14 14 N 1.46895 * 109.46791 * 94.98372 * 13 12 11 15 15 C 1.47479 * 110.99847 * 265.96757 * 14 13 12 16 16 C 1.53515 * 87.93404 * 221.29691 * 15 14 13 17 17 C 1.50703 * 114.34343 * 139.68281 * 16 15 14 18 18 H 1.08001 * 120.00188 * 266.08594 * 17 16 15 19 19 C 1.37878 * 119.99943 * 86.07410 * 17 16 15 20 20 N 1.31514 * 120.00004 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00218 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47081 * 90.00413 * 21 19 17 23 23 H 1.48491 * 109.47427 * 210.00848 * 21 19 17 24 24 H 1.48509 * 109.46823 * 330.00500 * 21 19 17 25 25 C 1.47487 * 111.00024 * 170.00080 * 14 13 12 26 26 N 1.31825 * 119.99291 * 359.75348 * 12 11 10 27 27 N 1.28345 * 122.27739 * 359.97438 * 26 12 11 28 28 H 1.09002 * 109.46782 * 299.99544 * 1 2 3 29 29 H 1.08999 * 109.47259 * 60.00009 * 1 2 3 30 30 H 1.09004 * 109.46967 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47208 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47164 * 300.00606 * 3 2 1 33 33 H 1.09002 * 109.46747 * 59.99698 * 3 2 1 34 34 H 1.08995 * 109.46814 * 299.99337 * 4 2 1 35 35 H 1.08999 * 109.47522 * 59.99747 * 4 2 1 36 36 H 1.08998 * 109.46846 * 179.97438 * 4 2 1 37 37 H 0.96999 * 120.00665 * 354.62450 * 8 6 5 38 38 H 1.08003 * 121.04483 * 0.03043 * 10 9 8 39 39 H 1.08003 * 120.98893 * 180.21623 * 11 10 9 40 40 H 1.09004 * 109.47107 * 214.98365 * 13 12 11 41 41 H 1.09001 * 109.47301 * 334.98437 * 13 12 11 42 42 H 1.08998 * 113.47908 * 336.06740 * 15 14 13 43 43 H 1.09004 * 113.47660 * 106.53419 * 15 14 13 44 44 H 1.08996 * 114.17122 * 272.37847 * 16 15 14 45 45 H 0.97001 * 120.00205 * 179.97438 * 20 19 17 46 46 H 1.09001 * 113.47402 * 253.46894 * 25 14 13 47 47 H 1.09005 * 113.47384 * 23.87264 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6844 1.1855 6 6 1.6524 -1.9723 1.3383 7 8 0.9512 -2.5094 0.5040 8 7 2.0632 -2.6639 2.4196 9 6 1.5987 -3.9608 2.6356 10 6 1.9365 -4.6398 3.8051 11 6 1.4457 -5.9250 3.9742 12 6 0.6573 -6.4601 2.9650 13 6 0.1047 -7.8555 3.1003 14 7 -1.2561 -7.7921 3.6498 15 6 -1.2414 -7.9445 5.1166 16 6 -2.4786 -8.8431 4.9800 17 6 -2.4735 -10.0488 5.8840 18 1 -2.0958 -10.9936 5.5220 19 6 -2.9509 -9.9457 7.1734 20 7 -3.4112 -8.7953 7.6141 21 14 -2.9454 -11.4404 8.2938 22 1 -1.6617 -11.4962 9.0383 23 1 -4.0719 -11.3419 9.2562 24 1 -3.0980 -12.6715 7.4774 25 6 -1.9179 -9.1081 3.5757 26 7 0.3917 -5.7473 1.8883 27 7 0.8387 -4.5549 1.7282 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 2.6821 -2.2596 3.0477 38 1 2.5579 -4.1775 4.5579 39 1 1.6736 -6.4949 4.8628 40 1 0.0791 -8.3327 2.1206 41 1 0.7404 -8.4348 3.7700 42 1 -0.3622 -8.4698 5.4898 43 1 -1.4366 -7.0152 5.6517 44 1 -3.4254 -8.3031 4.9879 45 1 -3.7474 -8.7228 8.5211 46 1 -2.6865 -9.1648 2.8049 47 1 -1.2192 -9.9439 3.5366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895345042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:07 Heat of formation + Delta-G solvation = 29.945099 kcal Electronic energy + Delta-G solvation = -28204.769814 eV Core-core repulsion = 24197.333258 eV Total energy + Delta-G solvation = -4007.436555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51560 -40.66902 -38.93640 -37.76078 -35.49785 -34.32946 -33.54026 -32.67318 -31.71623 -28.93041 -27.73395 -27.64900 -26.07455 -25.25622 -24.75723 -23.87650 -22.50461 -21.65826 -20.40123 -18.74612 -18.65780 -18.16665 -16.89460 -16.74229 -16.59683 -16.39016 -15.74091 -15.25088 -14.86904 -14.77012 -14.48950 -14.38116 -14.07033 -13.92675 -13.73800 -13.35905 -13.03086 -12.82528 -12.64950 -12.21816 -12.19673 -12.09308 -11.93464 -11.82471 -11.67159 -11.37744 -11.27762 -11.07385 -10.94894 -10.66172 -10.62892 -10.36958 -10.20558 -10.16219 -9.80736 -9.41639 -9.32952 -8.99493 -8.72504 -8.46555 -8.05423 -6.08542 -4.13468 0.83598 0.94701 1.61658 2.61384 3.25852 3.33703 3.36628 3.47623 3.66468 4.17205 4.37253 4.38857 4.43724 4.51434 4.55150 4.58228 4.67320 4.97445 5.11548 5.14396 5.17783 5.22046 5.23399 5.38194 5.40036 5.47522 5.57008 5.61020 5.66202 5.71582 5.87045 5.93524 6.02841 6.07888 6.10041 6.17363 6.28488 6.34389 6.40267 6.65646 6.67743 6.93267 7.07774 7.11672 7.69976 7.86684 8.01088 8.04795 8.33546 8.90303 8.91574 9.51808 11.00921 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027450 B = 0.001959 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.800534 B =14287.556324 C =14352.353984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.364 6.364 6 C 0.641 3.359 7 O -0.498 6.498 8 N -0.632 5.632 9 C 0.296 3.704 10 C -0.148 4.148 11 C -0.079 4.079 12 C 0.073 3.927 13 C 0.072 3.928 14 N -0.476 5.476 15 C 0.001 3.999 16 C 0.042 3.958 17 C -0.516 4.516 18 H 0.059 0.941 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.002 4.002 26 N -0.198 5.198 27 N -0.229 5.229 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.422 0.578 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.262 0.738 46 H 0.065 0.935 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.744 17.744 -10.733 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.101 3.899 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.280 6.280 6 C 0.393 3.607 7 O -0.379 6.379 8 N -0.287 5.287 9 C 0.059 3.941 10 C -0.180 4.180 11 C -0.109 4.109 12 C -0.074 4.074 13 C -0.059 4.059 14 N -0.199 5.199 15 C -0.128 4.128 16 C 0.023 3.977 17 C -0.554 4.554 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.523 5.523 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.130 4.130 26 N -0.041 5.041 27 N -0.076 5.076 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.260 0.740 38 H 0.169 0.831 39 H 0.172 0.828 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.266 18.455 -12.927 26.668 hybrid contribution 1.605 -1.107 2.834 3.440 sum 15.871 17.348 -10.093 25.587 Atomic orbital electron populations 1.22542 0.93656 1.05503 1.02641 1.22145 0.94631 0.91402 0.81767 1.21865 1.02184 0.92380 1.03268 1.22532 1.01483 1.03787 0.96434 1.86277 1.71792 1.22931 1.46959 1.18059 0.79599 0.80879 0.82151 1.91081 1.37069 1.69199 1.40586 1.41751 1.48674 1.12066 1.26181 1.19798 0.95728 0.85546 0.92991 1.21738 1.03306 0.95891 0.97035 1.22211 0.94578 0.94487 0.99609 1.22823 0.94343 0.98743 0.91499 1.21480 0.93348 0.89037 1.01994 1.68925 1.11210 1.29576 1.10169 1.24195 1.01578 1.00401 0.86591 1.20085 0.93928 0.94611 0.89084 1.21029 1.41919 0.95614 0.96849 0.92317 1.25031 0.94601 0.95814 0.98218 1.69971 1.41104 1.24069 1.17161 0.86611 0.77630 0.83269 0.80588 1.20692 1.21165 1.19779 1.24028 0.98017 0.89412 1.01588 1.73057 1.13100 0.98462 1.19460 1.73639 1.07749 1.03289 1.22955 0.92080 0.90910 0.89076 0.91475 0.89974 0.91404 0.89129 0.90923 0.92181 0.74034 0.83134 0.82761 0.89508 0.91992 0.92643 0.91890 0.91730 0.92850 0.91617 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 8.37 37.16 0.31 -1.46 16 2 C 0.14 1.22 1.13 -90.61 -0.10 1.12 16 3 C -0.14 -0.83 8.85 37.16 0.33 -0.50 16 4 C -0.19 -1.65 8.37 37.16 0.31 -1.34 16 5 O -0.36 -3.81 9.94 -40.34 -0.40 -4.21 16 6 C 0.64 8.13 8.02 54.05 0.43 8.57 16 7 O -0.50 -7.92 10.18 -19.27 -0.20 -8.11 16 8 N -0.63 -6.80 5.40 -15.74 -0.09 -6.88 16 9 C 0.30 4.01 7.51 -154.46 -1.16 2.85 16 10 C -0.15 -1.62 10.06 -39.02 -0.39 -2.01 16 11 C -0.08 -1.01 9.84 -39.24 -0.39 -1.40 16 12 C 0.07 1.18 6.45 -82.39 -0.53 0.65 16 13 C 0.07 1.18 5.15 -4.98 -0.03 1.16 16 14 N -0.48 -9.56 6.32 -246.09 -1.55 -11.11 16 15 C 0.00 0.03 7.28 -7.55 -0.05 -0.03 16 16 C 0.04 1.03 3.76 -91.24 -0.34 0.69 16 17 C -0.52 -13.63 8.83 -34.44 -0.30 -13.94 16 18 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 19 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -25.11 13.26 55.43 0.74 -24.37 16 21 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.00 -0.04 7.25 -7.55 -0.05 -0.10 16 26 N -0.20 -3.63 11.42 33.61 0.38 -3.25 16 27 N -0.23 -4.02 9.08 31.28 0.28 -3.73 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.42 2.76 8.82 -40.82 -0.36 2.40 16 38 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.15 1.62 8.06 -52.48 -0.42 1.19 16 40 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 41 H 0.06 0.92 7.21 -51.93 -0.37 0.55 16 42 H 0.06 1.16 7.38 -51.93 -0.38 0.78 16 43 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.06 1.11 7.87 -51.93 -0.41 0.70 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -33.00 387.54 -9.25 -42.26 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.17 Total: 2.08 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.07 Total: -4.05 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.24 Total: -49.35 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.60 Total: -12.33 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.00 -9.25 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895345042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.200 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds