Wall clock time and date at job start Tue Mar 31 2020 18:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46884 * 2 1 4 4 C 1.53004 * 109.46862 * 240.00405 * 2 1 3 5 5 O 1.45191 * 109.47269 * 119.99875 * 2 1 3 6 6 C 1.34644 * 117.00155 * 60.00580 * 5 2 1 7 7 O 1.21499 * 119.99371 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00015 * 180.27693 * 6 5 2 9 9 C 1.39445 * 119.99795 * 174.62999 * 8 6 5 10 10 C 1.39390 * 120.14990 * 185.09213 * 9 8 6 11 11 C 1.38611 * 117.91509 * 179.78313 * 10 9 8 12 12 C 1.38788 * 118.02898 * 0.48388 * 11 10 9 13 13 C 1.50698 * 120.00097 * 179.76979 * 12 11 10 14 14 N 1.46895 * 109.46791 * 94.98372 * 13 12 11 15 15 C 1.47479 * 110.99847 * 265.96757 * 14 13 12 16 16 C 1.53515 * 87.93404 * 221.29691 * 15 14 13 17 17 C 1.50703 * 114.34343 * 139.68281 * 16 15 14 18 18 H 1.08001 * 120.00188 * 266.08594 * 17 16 15 19 19 C 1.37878 * 119.99943 * 86.07410 * 17 16 15 20 20 N 1.31514 * 120.00004 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00218 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47081 * 90.00413 * 21 19 17 23 23 H 1.48491 * 109.47427 * 210.00848 * 21 19 17 24 24 H 1.48509 * 109.46823 * 330.00500 * 21 19 17 25 25 C 1.47487 * 111.00024 * 170.00080 * 14 13 12 26 26 N 1.31825 * 119.99291 * 359.75348 * 12 11 10 27 27 N 1.28345 * 122.27739 * 359.97438 * 26 12 11 28 28 H 1.09002 * 109.46782 * 299.99544 * 1 2 3 29 29 H 1.08999 * 109.47259 * 60.00009 * 1 2 3 30 30 H 1.09004 * 109.46967 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47208 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47164 * 300.00606 * 3 2 1 33 33 H 1.09002 * 109.46747 * 59.99698 * 3 2 1 34 34 H 1.08995 * 109.46814 * 299.99337 * 4 2 1 35 35 H 1.08999 * 109.47522 * 59.99747 * 4 2 1 36 36 H 1.08998 * 109.46846 * 179.97438 * 4 2 1 37 37 H 0.96999 * 120.00665 * 354.62450 * 8 6 5 38 38 H 1.08003 * 121.04483 * 0.03043 * 10 9 8 39 39 H 1.08003 * 120.98893 * 180.21623 * 11 10 9 40 40 H 1.09004 * 109.47107 * 214.98365 * 13 12 11 41 41 H 1.09001 * 109.47301 * 334.98437 * 13 12 11 42 42 H 1.08998 * 113.47908 * 336.06740 * 15 14 13 43 43 H 1.09004 * 113.47660 * 106.53419 * 15 14 13 44 44 H 1.08996 * 114.17122 * 272.37847 * 16 15 14 45 45 H 0.97001 * 120.00205 * 179.97438 * 20 19 17 46 46 H 1.09001 * 113.47402 * 253.46894 * 25 14 13 47 47 H 1.09005 * 113.47384 * 23.87264 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6844 1.1855 6 6 1.6524 -1.9723 1.3383 7 8 0.9512 -2.5094 0.5040 8 7 2.0632 -2.6639 2.4196 9 6 1.5987 -3.9608 2.6356 10 6 1.9365 -4.6398 3.8051 11 6 1.4457 -5.9250 3.9742 12 6 0.6573 -6.4601 2.9650 13 6 0.1047 -7.8555 3.1003 14 7 -1.2561 -7.7921 3.6498 15 6 -1.2414 -7.9445 5.1166 16 6 -2.4786 -8.8431 4.9800 17 6 -2.4735 -10.0488 5.8840 18 1 -2.0958 -10.9936 5.5220 19 6 -2.9509 -9.9457 7.1734 20 7 -3.4112 -8.7953 7.6141 21 14 -2.9454 -11.4404 8.2938 22 1 -1.6617 -11.4962 9.0383 23 1 -4.0719 -11.3419 9.2562 24 1 -3.0980 -12.6715 7.4774 25 6 -1.9179 -9.1081 3.5757 26 7 0.3917 -5.7473 1.8883 27 7 0.8387 -4.5549 1.7282 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 2.6821 -2.2596 3.0477 38 1 2.5579 -4.1775 4.5579 39 1 1.6736 -6.4949 4.8628 40 1 0.0791 -8.3327 2.1206 41 1 0.7404 -8.4348 3.7700 42 1 -0.3622 -8.4698 5.4898 43 1 -1.4366 -7.0152 5.6517 44 1 -3.4254 -8.3031 4.9879 45 1 -3.7474 -8.7228 8.5211 46 1 -2.6865 -9.1648 2.8049 47 1 -1.2192 -9.9439 3.5366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895345042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:06 Heat of formation + Delta-G solvation = 5.948699 kcal Electronic energy + Delta-G solvation = -28205.810375 eV Core-core repulsion = 24197.333258 eV Total energy + Delta-G solvation = -4008.477117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.53151 -41.67178 -40.55709 -38.67029 -36.54451 -35.18844 -34.89584 -34.27332 -32.92356 -30.44958 -28.38864 -28.29885 -27.73830 -26.61579 -26.14997 -25.32664 -23.52027 -23.00835 -21.27192 -20.45970 -19.62670 -19.14464 -18.67883 -17.90527 -17.52245 -17.20938 -16.99241 -16.76542 -16.23128 -16.03602 -15.69281 -15.61128 -15.21808 -15.05336 -14.75237 -14.48234 -14.30788 -13.88451 -13.39020 -13.35784 -13.32007 -13.13156 -12.94364 -12.89173 -12.86564 -12.79522 -12.62346 -12.40197 -12.24446 -12.19813 -12.00992 -11.61043 -11.43478 -11.31012 -11.14099 -11.06894 -10.85125 -10.49324 -10.47054 -9.86914 -9.65575 -8.12340 -6.23789 -0.16911 -0.11952 0.74575 1.45128 1.47244 1.57182 1.62773 2.44593 2.55432 2.61137 3.10604 3.17582 3.39809 3.57755 3.68961 3.71923 3.75121 3.77036 3.92082 4.01098 4.18978 4.30245 4.45597 4.48127 4.58696 4.59917 4.60470 4.71406 4.74806 4.75365 4.82646 4.85061 4.88144 4.88409 4.96524 4.98733 5.13414 5.26143 5.27046 5.27600 5.31207 5.46765 5.51475 5.66054 5.86830 6.08048 6.30413 6.38704 6.86230 7.13269 7.44962 7.81022 8.97440 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027450 B = 0.001959 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.800534 B =14287.556324 C =14352.353984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.127 3.873 3 C -0.133 4.133 4 C -0.181 4.181 5 O -0.357 6.357 6 C 0.636 3.364 7 O -0.534 6.534 8 N -0.617 5.617 9 C 0.291 3.709 10 C -0.123 4.123 11 C -0.082 4.082 12 C 0.056 3.944 13 C 0.075 3.925 14 N -0.487 5.487 15 C 0.021 3.979 16 C 0.019 3.981 17 C -0.525 4.525 18 H 0.064 0.936 19 C 0.014 3.986 20 N -0.924 5.924 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.266 1.266 25 C 0.013 3.987 26 N -0.241 5.241 27 N -0.275 5.275 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.443 0.557 38 H 0.205 0.795 39 H 0.183 0.817 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.023 0.977 45 H 0.262 0.738 46 H 0.067 0.933 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.359 18.456 -9.841 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.091 3.909 3 C -0.190 4.190 4 C -0.238 4.238 5 O -0.272 6.272 6 C 0.389 3.611 7 O -0.417 6.417 8 N -0.274 5.274 9 C 0.053 3.947 10 C -0.154 4.154 11 C -0.111 4.111 12 C -0.092 4.092 13 C -0.055 4.055 14 N -0.210 5.210 15 C -0.108 4.108 16 C 0.000 4.000 17 C -0.564 4.564 18 H 0.082 0.918 19 C -0.186 4.186 20 N -0.562 5.562 21 Si 0.784 3.216 22 H -0.197 1.197 23 H -0.214 1.214 24 H -0.190 1.190 25 C -0.116 4.116 26 N -0.083 5.083 27 N -0.121 5.121 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.285 0.715 38 H 0.222 0.778 39 H 0.200 0.800 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.912 19.188 -12.045 28.271 hybrid contribution 0.809 -1.218 2.485 2.883 sum 17.721 17.970 -9.560 26.988 Atomic orbital electron populations 1.22500 0.94398 1.03386 1.03766 1.22491 0.94279 0.92951 0.81197 1.21885 1.02708 0.89904 1.04507 1.22479 1.01895 1.01991 0.97457 1.86306 1.71487 1.21664 1.47739 1.18318 0.79176 0.81443 0.82114 1.91086 1.38600 1.70053 1.41988 1.41656 1.48522 1.11100 1.26092 1.20094 0.94959 0.86330 0.93332 1.22244 1.01921 0.94729 0.96512 1.22538 0.93697 0.95411 0.99484 1.22869 0.95532 0.98466 0.92356 1.21487 0.91548 0.90179 1.02312 1.68833 1.13946 1.29242 1.08942 1.23901 1.00472 0.98706 0.87762 1.20024 0.93404 0.94773 0.91802 1.21357 1.41488 0.96265 0.97248 0.91815 1.25842 0.94377 0.98511 0.99824 1.70108 1.42391 1.26204 1.17528 0.85548 0.77717 0.79835 0.78499 1.19663 1.21431 1.19039 1.23864 0.98229 0.90416 0.99084 1.72947 1.14843 0.99337 1.21183 1.73470 1.09878 1.03549 1.25240 0.91860 0.88887 0.92698 0.90631 0.87920 0.90984 0.92548 0.88966 0.91379 0.71515 0.77814 0.80000 0.89275 0.89682 0.91298 0.93813 0.95903 0.92935 0.91464 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.46 8.37 71.98 0.60 -2.86 16 2 C 0.13 2.14 1.13 -10.79 -0.01 2.13 16 3 C -0.13 -1.25 8.85 71.98 0.64 -0.61 16 4 C -0.18 -3.14 8.37 71.98 0.60 -2.54 16 5 O -0.36 -7.16 9.94 -55.53 -0.55 -7.71 16 6 C 0.64 16.15 8.02 129.79 1.04 17.19 16 7 O -0.53 -17.80 10.18 19.84 0.20 -17.60 16 8 N -0.62 -12.43 5.40 -434.14 -2.35 -14.77 16 9 C 0.29 7.57 7.51 132.96 1.00 8.56 16 10 C -0.12 -2.30 10.06 22.64 0.23 -2.08 16 11 C -0.08 -1.90 9.84 22.49 0.22 -1.68 16 12 C 0.06 1.78 6.45 42.69 0.28 2.05 16 13 C 0.07 2.39 5.15 85.56 0.44 2.83 16 14 N -0.49 -19.50 6.32 -932.48 -5.89 -25.39 16 15 C 0.02 0.90 7.28 83.57 0.61 1.51 16 16 C 0.02 0.96 3.76 -11.19 -0.04 0.92 16 17 C -0.53 -27.79 8.83 25.60 0.23 -27.57 16 18 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 19 C 0.01 0.74 5.46 84.65 0.46 1.20 16 20 N -0.92 -53.30 13.26 21.45 0.28 -53.02 16 21 Si 0.96 41.99 29.54 68.60 2.03 44.01 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 C 0.01 0.52 7.25 83.57 0.61 1.12 16 26 N -0.24 -9.06 11.42 -47.57 -0.54 -9.60 16 27 N -0.27 -9.87 9.08 -54.93 -0.50 -10.37 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.47 5.88 -2.38 -0.01 1.46 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.44 4.61 8.82 -92.71 -0.82 3.79 16 38 H 0.20 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.09 2.78 8.08 -2.38 -0.02 2.76 16 41 H 0.09 2.32 7.21 -2.39 -0.02 2.30 16 42 H 0.07 2.78 7.38 -2.39 -0.02 2.77 16 43 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.02 1.31 8.11 -2.39 -0.02 1.29 16 45 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 46 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 47 H 0.07 2.79 7.87 -2.38 -0.02 2.77 16 Total: -1.00 -76.23 387.54 -0.25 -76.48 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.17 Total: 17.80 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 6.89 Total: 0.18 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -8.99 Total: -113.16 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.35 Total: -25.31 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -76.23 -0.25 -76.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895345042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.433 kcal (2) G-P(sol) polarization free energy of solvation -76.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds