Wall clock time and date at job start Tue Mar 31 2020 19:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46535 * 2 1 4 4 H 1.08999 * 109.47095 * 55.00864 * 3 2 1 5 5 C 1.50706 * 109.46679 * 175.00254 * 3 2 1 6 6 H 1.07999 * 120.00144 * 120.00517 * 5 3 2 7 7 C 1.37876 * 119.99732 * 299.99839 * 5 3 2 8 8 N 1.31512 * 120.00420 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99563 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46999 * 90.00516 * 9 7 5 11 11 H 1.48501 * 109.46889 * 210.00342 * 9 7 5 12 12 H 1.48499 * 109.47312 * 330.00256 * 9 7 5 13 13 N 1.46501 * 109.47658 * 295.00127 * 3 2 1 14 14 C 1.34770 * 119.99942 * 85.00151 * 13 3 2 15 15 O 1.21287 * 119.99827 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00293 * 180.02562 * 14 13 3 17 17 H 1.08995 * 109.60188 * 60.32250 * 16 14 13 18 18 C 1.53346 * 109.60075 * 299.99985 * 16 14 13 19 19 C 1.53065 * 108.42542 * 172.71271 * 18 16 14 20 20 C 1.50176 * 109.88847 * 48.91446 * 19 18 16 21 21 O 1.21304 * 118.25056 * 162.37918 * 20 19 18 22 22 N 1.33357 * 123.50600 * 342.37970 * 20 19 18 23 23 C 1.40766 * 117.94451 * 182.24284 * 22 20 19 24 24 C 1.40253 * 126.08064 * 354.20561 * 23 22 20 25 25 N 1.30827 * 108.33273 * 180.02562 * 24 23 22 26 26 N 1.40064 * 108.37175 * 359.97438 * 25 24 23 27 27 C 1.46504 * 126.05656 * 180.02562 * 26 25 24 28 28 C 1.35757 * 126.08042 * 173.89595 * 23 22 20 29 29 C 1.45750 * 124.10850 * 2.27062 * 22 20 19 30 30 H 1.08998 * 109.47036 * 299.99038 * 1 2 3 31 31 H 1.09000 * 109.47453 * 59.99887 * 1 2 3 32 32 H 1.09005 * 109.46609 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46690 * 240.00541 * 2 1 3 34 34 H 1.08991 * 109.47388 * 120.00304 * 2 1 3 35 35 H 0.97002 * 119.99818 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99860 * 265.00124 * 13 3 2 37 37 H 1.08997 * 109.67303 * 292.44591 * 18 16 14 38 38 H 1.09004 * 109.67534 * 52.97905 * 18 16 14 39 39 H 1.08996 * 109.40220 * 169.02836 * 19 18 16 40 40 H 1.09004 * 109.40030 * 288.77033 * 19 18 16 41 41 H 1.07997 * 125.83378 * 0.03165 * 24 23 22 42 42 H 1.08995 * 109.47177 * 89.97206 * 27 26 25 43 43 H 1.09001 * 109.47231 * 209.97836 * 27 26 25 44 44 H 1.09004 * 109.46624 * 329.97802 * 27 26 25 45 45 H 1.08001 * 126.21010 * 0.02562 * 28 23 22 46 46 H 1.08995 * 109.30265 * 220.59267 * 29 22 20 47 47 H 1.08995 * 109.13670 * 101.10077 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0049 0.8814 1.3816 10 1 6.4416 2.1143 2.0848 11 1 6.4396 -0.3097 2.1547 12 1 6.6135 0.8419 0.0276 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6644 -1.3668 15 8 -0.3394 2.6326 -0.4339 16 6 0.0360 3.3378 -2.6546 17 1 0.0608 2.6136 -3.4689 18 6 1.0068 4.4856 -2.9573 19 6 0.6914 5.0310 -4.3522 20 6 -0.7834 5.2839 -4.4804 21 8 -1.1663 6.0063 -5.3765 22 7 -1.6946 4.7569 -3.6616 23 6 -3.0507 5.0337 -3.9182 24 6 -3.5442 5.9111 -4.8949 25 7 -4.8509 5.9050 -4.8310 26 7 -5.2390 5.0245 -3.8132 27 6 -6.6155 4.7235 -3.4119 28 6 -4.1136 4.4945 -3.2683 29 6 -1.3744 3.9127 -2.5175 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8294 -0.0611 2.9498 36 1 2.2718 2.1233 -1.9977 37 1 0.8824 5.2762 -2.2173 38 1 2.0319 4.1158 -2.9310 39 1 1.2334 5.9638 -4.5074 40 1 1.0010 4.3045 -5.1036 41 1 -2.9474 6.4923 -5.5822 42 1 -6.9862 3.8779 -3.9911 43 1 -6.6385 4.4752 -2.3508 44 1 -7.2459 5.5937 -3.5952 45 1 -4.0716 3.7772 -2.4621 46 1 -2.0927 3.0949 -2.4608 47 1 -1.4336 4.5081 -1.6064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935398971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:51 Heat of formation + Delta-G solvation = 11.847216 kcal Electronic energy + Delta-G solvation = -29327.056229 eV Core-core repulsion = 25318.834891 eV Total energy + Delta-G solvation = -4008.221338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.73430 -40.30170 -39.14715 -36.49889 -35.11406 -34.54282 -32.91511 -32.37140 -31.05388 -29.90913 -29.49421 -27.25238 -26.70014 -24.88564 -23.57533 -22.96474 -21.66858 -20.86324 -20.24002 -19.43676 -18.89959 -17.90669 -17.04361 -16.47115 -16.11950 -16.04807 -15.61364 -15.40247 -15.16983 -14.88957 -14.44641 -14.20452 -14.06110 -13.94659 -13.51822 -13.22779 -13.01182 -12.89051 -12.81943 -12.75566 -12.20704 -12.13100 -11.81790 -11.61246 -11.32379 -11.28754 -11.13809 -11.02652 -10.90415 -10.85724 -10.38947 -10.27211 -10.19012 -9.71819 -9.66978 -9.48894 -9.15420 -9.09196 -8.57018 -7.94527 -7.77451 -6.19356 -4.29099 1.61156 2.21634 2.33230 2.87724 3.02459 3.18327 3.19903 3.27358 3.28388 3.84625 4.26998 4.37789 4.43660 4.51662 4.58141 4.72090 4.77298 4.90281 5.06101 5.12473 5.14493 5.18166 5.21331 5.40799 5.48533 5.50661 5.53409 5.64121 5.69343 5.85959 5.98951 6.03400 6.30739 6.36172 6.56634 6.73638 6.87271 6.94631 7.10071 7.25764 7.27148 7.33710 7.53290 7.58776 7.63888 7.81342 8.02504 8.10246 8.53893 8.68567 8.99011 9.38507 10.85866 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019820 B = 0.002694 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.403589 B =10392.422761 C =11545.710576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.512 3.488 15 O -0.547 6.547 16 C -0.126 4.126 17 H 0.103 0.897 18 C -0.118 4.118 19 C -0.127 4.127 20 C 0.517 3.483 21 O -0.548 6.548 22 N -0.517 5.517 23 C -0.004 4.004 24 C 0.056 3.944 25 N -0.294 5.294 26 N -0.378 5.378 27 C 0.108 3.892 28 C 0.023 3.977 29 C 0.131 3.869 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.022 0.978 33 H 0.031 0.969 34 H 0.099 0.901 35 H 0.265 0.735 36 H 0.389 0.611 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.212 0.788 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.179 0.821 46 H 0.085 0.915 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.565 5.994 -10.922 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.350 5.350 14 C 0.296 3.704 15 O -0.426 6.426 16 C -0.148 4.148 17 H 0.121 0.879 18 C -0.156 4.156 19 C -0.167 4.167 20 C 0.307 3.693 21 O -0.427 6.427 22 N -0.242 5.242 23 C -0.107 4.107 24 C -0.131 4.131 25 N -0.117 5.117 26 N -0.163 5.163 27 C -0.033 4.033 28 C -0.125 4.125 29 C 0.009 3.991 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.221 0.779 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.228 0.772 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.196 0.804 46 H 0.103 0.897 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.424 6.640 -10.918 18.534 hybrid contribution 2.072 -0.662 0.304 2.196 sum -11.352 5.977 -10.615 16.652 Atomic orbital electron populations 1.21838 0.98384 0.98069 1.01114 1.21942 0.92582 0.99833 1.02367 1.18808 0.94260 0.89156 0.80855 0.93210 1.21213 0.90652 1.39164 1.06333 0.92060 1.24878 0.98597 0.94741 0.95403 1.69885 1.35182 1.37499 1.09327 0.86469 0.84841 0.77690 0.78227 1.20556 1.21079 1.19837 1.46484 1.14370 1.55479 1.18637 1.19838 0.83105 0.79418 0.88081 1.90692 1.51430 1.60147 1.40295 1.21636 0.95349 0.98728 0.99137 0.87934 1.21715 1.00055 0.97566 0.96215 1.21653 0.91175 1.04664 0.99202 1.20309 0.88835 0.79411 0.80764 1.90518 1.80400 1.37899 1.33885 1.44457 1.03063 1.48180 1.28476 1.17857 0.84117 1.05391 1.03326 1.24811 0.90485 0.98724 0.99071 1.77386 1.14133 1.12437 1.07719 1.48262 1.05851 1.34393 1.27772 1.21816 0.78047 1.02565 1.00920 1.22034 0.85518 1.02572 1.02338 1.21311 0.95972 0.94379 0.87462 0.93120 0.94390 0.95864 0.95006 0.88259 0.92516 0.77850 0.90180 0.89179 0.87439 0.87690 0.77214 0.90868 0.89429 0.89333 0.80444 0.89690 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.51 37.16 0.32 -2.48 16 2 C -0.13 -2.90 5.45 -26.73 -0.15 -3.05 16 3 C 0.27 6.22 2.24 -69.08 -0.15 6.07 16 4 H 0.05 1.35 7.58 -51.93 -0.39 0.95 16 5 C -0.54 -13.17 8.73 -34.44 -0.30 -13.47 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.88 -23.62 11.29 55.43 0.63 -22.99 16 9 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 N -0.70 -12.55 4.87 -54.93 -0.27 -12.82 16 14 C 0.51 8.40 5.73 -10.99 -0.06 8.34 16 15 O -0.55 -10.84 12.98 5.55 0.07 -10.77 16 16 C -0.13 -1.48 2.60 -91.63 -0.24 -1.71 16 17 H 0.10 1.05 8.12 -51.93 -0.42 0.63 16 18 C -0.12 -1.17 5.28 -26.52 -0.14 -1.31 16 19 C -0.13 -1.17 6.03 -28.10 -0.17 -1.34 16 20 C 0.52 6.48 7.44 -11.87 -0.09 6.39 16 21 O -0.55 -8.21 13.59 5.54 0.08 -8.14 16 22 N -0.52 -6.40 3.07 -114.86 -0.35 -6.75 16 23 C 0.00 -0.05 6.54 -83.88 -0.55 -0.60 16 24 C 0.06 0.79 10.68 -17.22 -0.18 0.61 16 25 N -0.29 -4.09 12.56 30.70 0.39 -3.71 16 26 N -0.38 -4.24 4.04 -67.82 -0.27 -4.52 16 27 C 0.11 0.70 11.48 59.85 0.69 1.38 16 28 C 0.02 0.26 10.61 -16.68 -0.18 0.08 16 29 C 0.13 1.55 4.69 -4.49 -0.02 1.52 16 30 H 0.05 1.11 7.85 -51.93 -0.41 0.70 16 31 H 0.04 0.73 5.65 -51.93 -0.29 0.44 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 2.53 5.95 -51.93 -0.31 2.22 16 35 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.39 5.94 7.91 -40.82 -0.32 5.62 16 37 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 38 H 0.09 0.83 7.41 -51.93 -0.38 0.45 16 39 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.21 3.07 5.69 -52.49 -0.30 2.77 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.18 1.54 7.24 -52.49 -0.38 1.16 16 46 H 0.08 0.96 7.00 -51.93 -0.36 0.59 16 47 H 0.09 1.10 7.79 -51.93 -0.40 0.70 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -31.80 373.91 -7.34 -39.15 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.90 Total: 8.16 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.32 Total: 2.05 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.12 Total: -50.79 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.15 Total: -18.91 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.80 -7.34 -39.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935398971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.994 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds