Wall clock time and date at job start Tue Mar 31 2020 19:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46535 * 2 1 4 4 H 1.08999 * 109.47095 * 55.00864 * 3 2 1 5 5 C 1.50706 * 109.46679 * 175.00254 * 3 2 1 6 6 H 1.07999 * 120.00144 * 120.00517 * 5 3 2 7 7 C 1.37876 * 119.99732 * 299.99839 * 5 3 2 8 8 N 1.31512 * 120.00420 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99563 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46999 * 90.00516 * 9 7 5 11 11 H 1.48501 * 109.46889 * 210.00342 * 9 7 5 12 12 H 1.48499 * 109.47312 * 330.00256 * 9 7 5 13 13 N 1.46501 * 109.47658 * 295.00127 * 3 2 1 14 14 C 1.34770 * 119.99942 * 85.00151 * 13 3 2 15 15 O 1.21287 * 119.99827 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00293 * 180.02562 * 14 13 3 17 17 H 1.08995 * 109.60188 * 60.32250 * 16 14 13 18 18 C 1.53346 * 109.60075 * 299.99985 * 16 14 13 19 19 C 1.53065 * 108.42542 * 172.71271 * 18 16 14 20 20 C 1.50176 * 109.88847 * 48.91446 * 19 18 16 21 21 O 1.21304 * 118.25056 * 162.37918 * 20 19 18 22 22 N 1.33357 * 123.50600 * 342.37970 * 20 19 18 23 23 C 1.40766 * 117.94451 * 182.24284 * 22 20 19 24 24 C 1.40253 * 126.08064 * 354.20561 * 23 22 20 25 25 N 1.30827 * 108.33273 * 180.02562 * 24 23 22 26 26 N 1.40064 * 108.37175 * 359.97438 * 25 24 23 27 27 C 1.46504 * 126.05656 * 180.02562 * 26 25 24 28 28 C 1.35757 * 126.08042 * 173.89595 * 23 22 20 29 29 C 1.45750 * 124.10850 * 2.27062 * 22 20 19 30 30 H 1.08998 * 109.47036 * 299.99038 * 1 2 3 31 31 H 1.09000 * 109.47453 * 59.99887 * 1 2 3 32 32 H 1.09005 * 109.46609 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46690 * 240.00541 * 2 1 3 34 34 H 1.08991 * 109.47388 * 120.00304 * 2 1 3 35 35 H 0.97002 * 119.99818 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99860 * 265.00124 * 13 3 2 37 37 H 1.08997 * 109.67303 * 292.44591 * 18 16 14 38 38 H 1.09004 * 109.67534 * 52.97905 * 18 16 14 39 39 H 1.08996 * 109.40220 * 169.02836 * 19 18 16 40 40 H 1.09004 * 109.40030 * 288.77033 * 19 18 16 41 41 H 1.07997 * 125.83378 * 0.03165 * 24 23 22 42 42 H 1.08995 * 109.47177 * 89.97206 * 27 26 25 43 43 H 1.09001 * 109.47231 * 209.97836 * 27 26 25 44 44 H 1.09004 * 109.46624 * 329.97802 * 27 26 25 45 45 H 1.08001 * 126.21010 * 0.02562 * 28 23 22 46 46 H 1.08995 * 109.30265 * 220.59267 * 29 22 20 47 47 H 1.08995 * 109.13670 * 101.10077 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0049 0.8814 1.3816 10 1 6.4416 2.1143 2.0848 11 1 6.4396 -0.3097 2.1547 12 1 6.6135 0.8419 0.0276 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6644 -1.3668 15 8 -0.3394 2.6326 -0.4339 16 6 0.0360 3.3378 -2.6546 17 1 0.0608 2.6136 -3.4689 18 6 1.0068 4.4856 -2.9573 19 6 0.6914 5.0310 -4.3522 20 6 -0.7834 5.2839 -4.4804 21 8 -1.1663 6.0063 -5.3765 22 7 -1.6946 4.7569 -3.6616 23 6 -3.0507 5.0337 -3.9182 24 6 -3.5442 5.9111 -4.8949 25 7 -4.8509 5.9050 -4.8310 26 7 -5.2390 5.0245 -3.8132 27 6 -6.6155 4.7235 -3.4119 28 6 -4.1136 4.4945 -3.2683 29 6 -1.3744 3.9127 -2.5175 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8294 -0.0611 2.9498 36 1 2.2718 2.1233 -1.9977 37 1 0.8824 5.2762 -2.2173 38 1 2.0319 4.1158 -2.9310 39 1 1.2334 5.9638 -4.5074 40 1 1.0010 4.3045 -5.1036 41 1 -2.9474 6.4923 -5.5822 42 1 -6.9862 3.8779 -3.9911 43 1 -6.6385 4.4752 -2.3508 44 1 -7.2459 5.5937 -3.5952 45 1 -4.0716 3.7772 -2.4621 46 1 -2.0927 3.0949 -2.4608 47 1 -1.4336 4.5081 -1.6064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935398971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:50 Heat of formation + Delta-G solvation = -9.167590 kcal Electronic energy + Delta-G solvation = -29327.967499 eV Core-core repulsion = 25318.834891 eV Total energy + Delta-G solvation = -4009.132608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.66825 -41.33816 -40.41648 -37.64274 -36.71205 -35.45738 -34.21107 -33.67299 -32.65517 -30.93931 -30.39112 -28.91156 -27.59555 -25.90373 -24.90994 -24.30459 -22.78187 -21.79727 -21.62398 -20.95456 -19.85753 -19.09848 -18.35408 -17.52698 -17.32533 -17.05884 -16.95323 -16.63964 -16.24240 -16.11199 -15.87160 -15.18823 -15.14958 -14.96653 -14.65811 -14.54002 -14.33022 -13.88028 -13.72371 -13.54467 -13.45066 -13.38899 -13.16775 -13.01061 -12.86746 -12.74096 -12.65088 -12.22483 -12.10564 -12.01309 -11.96731 -11.79351 -11.51005 -11.15305 -10.98778 -10.65182 -10.55227 -10.42485 -10.38792 -9.54626 -8.71184 -8.11642 -6.27592 0.71655 1.35155 1.41400 1.47616 1.49202 1.58170 1.88028 1.98063 2.06130 2.40495 2.67633 3.18772 3.47417 3.49289 3.69853 3.79900 3.80891 3.93026 4.24201 4.30380 4.33004 4.45370 4.45791 4.54505 4.57214 4.61312 4.65218 4.70032 4.71333 4.78730 4.83814 4.93747 5.01292 5.07334 5.14535 5.18834 5.34381 5.50825 5.63308 5.69334 5.78722 5.87317 5.98954 6.04806 6.24162 6.34735 6.63819 6.81788 7.05221 7.09604 7.39770 7.65005 8.93264 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019820 B = 0.002694 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.403589 B =10392.422761 C =11545.710576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.280 3.720 4 H 0.001 0.999 5 C -0.543 4.543 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.963 3.037 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.260 1.260 13 N -0.700 5.700 14 C 0.513 3.487 15 O -0.582 6.582 16 C -0.111 4.111 17 H 0.129 0.871 18 C -0.112 4.112 19 C -0.115 4.115 20 C 0.507 3.493 21 O -0.578 6.578 22 N -0.514 5.514 23 C -0.031 4.031 24 C 0.039 3.961 25 N -0.320 5.320 26 N -0.374 5.374 27 C 0.096 3.904 28 C 0.034 3.966 29 C 0.137 3.863 30 H 0.026 0.974 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.263 0.737 36 H 0.405 0.595 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.199 0.801 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.206 0.794 46 H 0.093 0.907 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.203 5.509 -12.224 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.176 3.824 4 H 0.019 0.981 5 C -0.581 4.581 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.789 3.211 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.184 1.184 13 N -0.348 5.348 14 C 0.299 3.701 15 O -0.463 6.463 16 C -0.133 4.133 17 H 0.147 0.853 18 C -0.150 4.150 19 C -0.154 4.154 20 C 0.298 3.702 21 O -0.459 6.459 22 N -0.238 5.238 23 C -0.134 4.134 24 C -0.146 4.146 25 N -0.144 5.144 26 N -0.158 5.158 27 C -0.043 4.043 28 C -0.115 4.115 29 C 0.014 3.986 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.240 0.760 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.215 0.785 42 H 0.107 0.893 43 H 0.132 0.868 44 H 0.112 0.888 45 H 0.222 0.778 46 H 0.111 0.889 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.073 6.171 -12.260 18.955 hybrid contribution 1.822 -0.494 0.750 2.031 sum -11.251 5.677 -11.510 17.067 Atomic orbital electron populations 1.21678 0.96792 0.99054 1.00496 1.21795 0.93938 0.99315 1.01180 1.18326 0.93370 0.89092 0.81582 0.98119 1.21607 0.91681 1.38393 1.06428 0.90799 1.25699 1.02747 0.94646 0.95304 1.70041 1.36845 1.38612 1.09886 0.85478 0.79887 0.77180 0.78582 1.20668 1.21464 1.18359 1.46190 1.15503 1.55655 1.17495 1.20539 0.81935 0.78427 0.89211 1.90687 1.52318 1.61147 1.42139 1.21525 0.95556 0.99468 0.96751 0.85287 1.21700 1.00263 0.96557 0.96489 1.21662 0.88712 1.05975 0.99087 1.20992 0.90105 0.78850 0.80250 1.90519 1.81033 1.39195 1.35153 1.44472 1.02908 1.48053 1.28396 1.18096 0.85002 1.06263 1.04017 1.24685 0.90792 0.99458 0.99710 1.77313 1.14080 1.13809 1.09191 1.48707 1.07449 1.33105 1.26568 1.22231 0.75842 1.03441 1.02806 1.22477 0.84985 1.01995 1.02017 1.21230 0.96308 0.94277 0.86759 0.95476 0.93162 0.93999 0.94058 0.91420 0.92804 0.75976 0.91155 0.87701 0.86123 0.85284 0.78456 0.89308 0.86783 0.88803 0.77782 0.88898 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 8.51 71.98 0.61 -4.35 16 2 C -0.12 -5.57 5.45 30.60 0.17 -5.40 16 3 C 0.28 12.91 2.24 44.25 0.10 13.01 16 4 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 5 C -0.54 -26.43 8.73 25.60 0.22 -26.20 16 6 H 0.07 3.32 7.74 -2.91 -0.02 3.30 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -50.10 11.29 21.45 0.24 -49.86 16 9 Si 0.96 40.08 29.54 68.60 2.03 42.10 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 13 N -0.70 -23.99 4.87 -446.09 -2.17 -26.16 16 14 C 0.51 16.10 5.73 87.66 0.50 16.60 16 15 O -0.58 -22.93 12.98 -3.05 -0.04 -22.96 16 16 C -0.11 -2.32 2.60 -11.45 -0.03 -2.35 16 17 H 0.13 2.11 8.12 -2.39 -0.02 2.09 16 18 C -0.11 -1.94 5.28 30.73 0.16 -1.77 16 19 C -0.12 -1.80 6.03 29.71 0.18 -1.62 16 20 C 0.51 12.03 7.44 87.71 0.65 12.68 16 21 O -0.58 -17.20 13.59 -3.10 -0.04 -17.24 16 22 N -0.51 -12.08 3.07 -636.49 -1.95 -14.03 16 23 C -0.03 -0.79 6.54 37.62 0.25 -0.54 16 24 C 0.04 1.13 10.68 85.33 0.91 2.04 16 25 N -0.32 -8.88 12.56 -56.78 -0.71 -9.59 16 26 N -0.37 -7.87 4.04 -368.47 -1.49 -9.35 16 27 C 0.10 1.03 11.48 127.77 1.47 2.50 16 28 C 0.03 0.71 10.61 83.50 0.89 1.59 16 29 C 0.14 2.99 4.69 86.49 0.41 3.39 16 30 H 0.03 1.19 7.85 -2.39 -0.02 1.17 16 31 H 0.05 1.88 5.65 -2.39 -0.01 1.86 16 32 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 3.52 5.95 -2.39 -0.01 3.51 16 35 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 36 H 0.40 11.29 7.91 -92.71 -0.73 10.56 16 37 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 38 H 0.10 1.56 7.41 -2.38 -0.02 1.54 16 39 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.13 1.46 8.14 -2.38 -0.02 1.45 16 41 H 0.20 6.07 5.69 -2.91 -0.02 6.05 16 42 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 0.92 8.14 -2.38 -0.02 0.91 16 45 H 0.21 2.99 7.24 -2.91 -0.02 2.97 16 46 H 0.09 1.88 7.00 -2.39 -0.02 1.86 16 47 H 0.07 1.80 7.79 -2.39 -0.02 1.78 16 Total: -1.00 -71.49 373.91 3.06 -68.43 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.26 Total: 27.83 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 6.93 Total: 10.84 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -6.08 Total: -109.01 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.08 Total: -40.21 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.10 kcal Total: -71.49 3.06 -68.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935398971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.266 kcal (2) G-P(sol) polarization free energy of solvation -71.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds