Wall clock time and date at job start Tue Mar 31 2020 19:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47204 * 2 1 4 4 H 1.09001 * 109.47288 * 305.00009 * 3 2 1 5 5 C 1.50701 * 109.47025 * 185.00377 * 3 2 1 6 6 H 1.08003 * 119.99908 * 240.00109 * 5 3 2 7 7 C 1.37872 * 120.00438 * 59.99771 * 5 3 2 8 8 N 1.31517 * 119.99770 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00287 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47171 * 60.00111 * 9 7 5 11 11 H 1.48498 * 109.47403 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47088 * 300.00389 * 9 7 5 13 13 N 1.46501 * 109.47211 * 65.00060 * 3 2 1 14 14 C 1.34769 * 120.00119 * 274.72578 * 13 3 2 15 15 O 1.21285 * 120.00038 * 0.27406 * 14 13 3 16 16 C 1.50701 * 120.00268 * 180.27278 * 14 13 3 17 17 H 1.09002 * 109.59904 * 60.32112 * 16 14 13 18 18 C 1.53343 * 109.60201 * 300.00295 * 16 14 13 19 19 C 1.53072 * 108.42274 * 172.71080 * 18 16 14 20 20 C 1.50172 * 109.89425 * 48.90034 * 19 18 16 21 21 O 1.21299 * 118.25027 * 162.44152 * 20 19 18 22 22 N 1.33356 * 123.50700 * 342.41427 * 20 19 18 23 23 C 1.40762 * 117.94764 * 182.22437 * 22 20 19 24 24 C 1.40254 * 126.08112 * 354.17986 * 23 22 20 25 25 N 1.30825 * 108.33730 * 179.97438 * 24 23 22 26 26 N 1.40075 * 108.36798 * 359.97438 * 25 24 23 27 27 C 1.46498 * 126.05119 * 180.02562 * 26 25 24 28 28 C 1.35756 * 126.08076 * 173.86795 * 23 22 20 29 29 C 1.45755 * 124.10517 * 2.22759 * 22 20 19 30 30 H 1.09001 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46753 * 299.99692 * 1 2 3 32 32 H 1.08992 * 109.46937 * 59.99863 * 1 2 3 33 33 H 1.09003 * 109.46753 * 240.00308 * 2 1 3 34 34 H 1.09000 * 109.47511 * 120.00311 * 2 1 3 35 35 H 0.97001 * 120.00030 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99683 * 94.99882 * 13 3 2 37 37 H 1.09000 * 109.67354 * 292.44213 * 18 16 14 38 38 H 1.09000 * 109.67525 * 52.94078 * 18 16 14 39 39 H 1.09008 * 109.40039 * 169.02996 * 19 18 16 40 40 H 1.09003 * 109.39943 * 288.76552 * 19 18 16 41 41 H 1.08002 * 125.82786 * 359.97438 * 24 23 22 42 42 H 1.09005 * 109.46803 * 89.98203 * 27 26 25 43 43 H 1.09001 * 109.47366 * 209.97798 * 27 26 25 44 44 H 1.08996 * 109.47231 * 329.98345 * 27 26 25 45 45 H 1.07998 * 126.21497 * 0.03104 * 28 23 22 46 46 H 1.09001 * 109.30121 * 220.61162 * 29 22 20 47 47 H 1.08993 * 109.30147 * 101.23563 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8887 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3819 10 1 6.5976 0.1472 -0.2351 11 1 6.3978 0.2176 -2.6510 12 1 6.4995 2.2814 -1.3822 13 7 1.6525 2.0974 1.2518 14 6 0.4374 2.6692 1.3651 15 8 -0.3373 2.6371 0.4324 16 6 0.0410 3.3483 2.6507 17 1 0.7308 4.1660 2.8600 18 6 0.0800 2.3351 3.8010 19 6 -0.1465 3.0864 5.1153 20 6 -1.3421 3.9865 4.9899 21 8 -1.8564 4.4028 6.0065 22 7 -1.8682 4.3529 3.8206 23 6 -2.9612 5.2398 3.8380 24 6 -3.6358 5.6971 4.9794 25 7 -4.5912 6.5047 4.5969 26 7 -4.5614 6.5931 3.1993 27 6 -5.4626 7.3935 2.3666 28 6 -3.5461 5.8092 2.7532 29 6 -1.3825 3.8927 2.5257 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8292 -0.0605 -2.9503 36 1 2.2720 2.1231 1.9977 37 1 -0.7057 1.5925 3.6627 38 1 1.0517 1.8416 3.8226 39 1 -0.3162 2.3687 5.9180 40 1 0.7347 3.6849 5.3468 41 1 -3.4057 5.4283 5.9999 42 1 -5.0388 8.3877 2.2245 43 1 -5.5876 6.9100 1.3977 44 1 -6.4318 7.4786 2.8580 45 1 -3.2577 5.6635 1.7227 46 1 -1.3894 4.7249 1.8218 47 1 -2.0380 3.1052 2.1542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935398974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:03 Heat of formation + Delta-G solvation = 11.820481 kcal Electronic energy + Delta-G solvation = -29354.552730 eV Core-core repulsion = 25346.330233 eV Total energy + Delta-G solvation = -4008.222497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.73543 -40.30636 -39.14935 -36.49436 -35.11475 -34.54501 -32.91346 -32.37039 -31.06382 -29.90328 -29.49840 -27.26477 -26.68488 -24.88665 -23.56410 -22.97535 -21.68249 -20.86256 -20.23237 -19.43578 -18.90467 -17.90424 -17.03467 -16.45580 -16.13123 -16.04004 -15.69341 -15.37812 -15.16817 -14.85666 -14.44417 -14.19935 -14.10588 -13.92828 -13.48188 -13.26711 -13.00831 -12.88261 -12.82659 -12.74729 -12.28535 -12.06468 -11.82340 -11.57286 -11.34015 -11.31368 -11.14665 -11.04522 -10.87789 -10.86007 -10.39482 -10.25987 -10.19386 -9.71282 -9.67621 -9.48881 -9.15301 -9.09044 -8.56876 -7.94472 -7.77597 -6.19131 -4.29056 1.61174 2.21624 2.32988 2.87483 3.02320 3.18597 3.20932 3.26815 3.27400 3.84193 4.27223 4.37484 4.43207 4.51272 4.57556 4.71504 4.76702 4.90510 5.05862 5.12534 5.14663 5.18205 5.20730 5.40652 5.48223 5.50146 5.53359 5.62741 5.68575 5.84575 5.97631 6.02919 6.31863 6.37537 6.57819 6.73602 6.87256 6.95522 7.10902 7.25780 7.27478 7.34017 7.53505 7.58735 7.64068 7.81685 8.02138 8.10613 8.53958 8.68440 8.99042 9.38498 10.86013 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.002630 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.908684 B =10643.515103 C =11244.415227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.512 3.488 15 O -0.547 6.547 16 C -0.127 4.127 17 H 0.104 0.896 18 C -0.117 4.117 19 C -0.127 4.127 20 C 0.517 3.483 21 O -0.548 6.548 22 N -0.517 5.517 23 C -0.004 4.004 24 C 0.056 3.944 25 N -0.294 5.294 26 N -0.378 5.378 27 C 0.108 3.892 28 C 0.023 3.977 29 C 0.131 3.869 30 H 0.022 0.978 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.031 0.969 35 H 0.265 0.735 36 H 0.389 0.611 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.212 0.788 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.179 0.821 46 H 0.085 0.915 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.644 8.145 10.070 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.350 5.350 14 C 0.296 3.704 15 O -0.426 6.426 16 C -0.149 4.149 17 H 0.122 0.878 18 C -0.155 4.155 19 C -0.167 4.167 20 C 0.307 3.693 21 O -0.427 6.427 22 N -0.241 5.241 23 C -0.107 4.107 24 C -0.131 4.131 25 N -0.117 5.117 26 N -0.163 5.163 27 C -0.033 4.033 28 C -0.124 4.124 29 C 0.008 3.992 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.221 0.779 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.228 0.772 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.196 0.804 46 H 0.103 0.897 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.417 8.995 9.980 18.295 hybrid contribution 2.121 -0.563 -0.330 2.219 sum -10.296 8.432 9.650 16.439 Atomic orbital electron populations 1.21835 0.98352 0.98090 1.01139 1.21933 0.92581 0.99761 1.02353 1.18801 0.94208 0.89196 0.80838 0.93252 1.21182 0.90682 1.39273 1.06357 0.92133 1.24875 0.98592 0.94744 0.95378 1.69877 1.35268 1.37432 1.09312 0.86525 0.84842 0.78332 0.77506 1.20136 1.21133 1.20195 1.46483 1.14508 1.55339 1.18639 1.19836 0.83085 0.79509 0.88009 1.90692 1.51346 1.60170 1.40360 1.21635 0.97468 0.99858 0.95914 0.87836 1.21709 1.04560 0.97467 0.91776 1.21652 0.96335 0.98831 0.99876 1.20297 0.85440 0.81479 0.82104 1.90518 1.61126 1.55898 1.35154 1.44448 1.29195 1.43262 1.07236 1.17854 0.96493 1.02569 0.93793 1.24808 0.92167 0.95234 1.00879 1.77388 1.22841 1.22377 0.89069 1.48264 1.25892 1.37092 1.05033 1.21815 0.93272 0.94725 0.93536 1.22037 0.93422 0.97781 0.99194 1.21301 0.94445 1.00780 0.82624 0.95857 0.94316 0.93173 0.88302 0.94987 0.92453 0.77856 0.90257 0.89268 0.87457 0.87656 0.77220 0.90860 0.89428 0.89338 0.80432 0.89666 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.52 37.16 0.32 -2.49 16 2 C -0.13 -2.87 5.45 -26.73 -0.15 -3.02 16 3 C 0.27 6.24 2.24 -69.08 -0.15 6.08 16 4 H 0.05 1.34 7.57 -51.93 -0.39 0.94 16 5 C -0.54 -13.25 8.73 -34.44 -0.30 -13.55 16 6 H 0.06 1.42 7.74 -52.48 -0.41 1.02 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.63 11.29 55.43 0.63 -23.01 16 9 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 10 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.70 -12.55 4.87 -54.93 -0.27 -12.82 16 14 C 0.51 8.41 5.74 -10.99 -0.06 8.35 16 15 O -0.55 -10.85 12.99 5.55 0.07 -10.77 16 16 C -0.13 -1.48 2.60 -91.64 -0.24 -1.72 16 17 H 0.10 1.07 8.12 -51.93 -0.42 0.65 16 18 C -0.12 -1.14 5.28 -26.52 -0.14 -1.28 16 19 C -0.13 -1.16 6.03 -28.10 -0.17 -1.33 16 20 C 0.52 6.45 7.44 -11.87 -0.09 6.36 16 21 O -0.55 -8.18 13.59 5.54 0.08 -8.11 16 22 N -0.52 -6.38 3.07 -114.87 -0.35 -6.73 16 23 C 0.00 -0.05 6.54 -83.88 -0.55 -0.60 16 24 C 0.06 0.79 10.68 -17.22 -0.18 0.61 16 25 N -0.29 -4.10 12.56 30.70 0.39 -3.71 16 26 N -0.38 -4.25 4.04 -67.82 -0.27 -4.53 16 27 C 0.11 0.70 11.48 59.85 0.69 1.39 16 28 C 0.02 0.26 10.61 -16.68 -0.18 0.08 16 29 C 0.13 1.54 4.70 -4.49 -0.02 1.52 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.75 5.66 -51.93 -0.29 0.45 16 32 H 0.05 1.10 7.85 -51.93 -0.41 0.70 16 33 H 0.10 2.52 5.95 -51.93 -0.31 2.21 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 36 H 0.39 5.94 7.91 -40.82 -0.32 5.61 16 37 H 0.08 0.83 8.13 -51.93 -0.42 0.40 16 38 H 0.09 0.79 7.41 -51.93 -0.38 0.41 16 39 H 0.11 0.87 8.14 -51.92 -0.42 0.44 16 40 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.21 3.06 5.69 -52.49 -0.30 2.76 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.18 1.55 7.24 -52.49 -0.38 1.17 16 46 H 0.09 0.97 7.00 -51.93 -0.36 0.60 16 47 H 0.09 1.09 7.78 -51.93 -0.40 0.69 16 LS Contribution 373.95 15.07 5.64 5.64 Total: -1.00 -31.83 373.95 -7.34 -39.17 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.90 Total: 8.11 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.32 Total: 2.04 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.12 Total: -50.80 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.15 Total: -18.88 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.83 -7.34 -39.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935398974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.995 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds