Wall clock time and date at job start Tue Mar 31 2020 19:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47204 * 2 1 4 4 H 1.09001 * 109.47288 * 305.00009 * 3 2 1 5 5 C 1.50701 * 109.47025 * 185.00377 * 3 2 1 6 6 H 1.08003 * 119.99908 * 240.00109 * 5 3 2 7 7 C 1.37872 * 120.00438 * 59.99771 * 5 3 2 8 8 N 1.31517 * 119.99770 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00287 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47171 * 60.00111 * 9 7 5 11 11 H 1.48498 * 109.47403 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47088 * 300.00389 * 9 7 5 13 13 N 1.46501 * 109.47211 * 65.00060 * 3 2 1 14 14 C 1.34769 * 120.00119 * 274.72578 * 13 3 2 15 15 O 1.21285 * 120.00038 * 0.27406 * 14 13 3 16 16 C 1.50701 * 120.00268 * 180.27278 * 14 13 3 17 17 H 1.09002 * 109.59904 * 60.32112 * 16 14 13 18 18 C 1.53343 * 109.60201 * 300.00295 * 16 14 13 19 19 C 1.53072 * 108.42274 * 172.71080 * 18 16 14 20 20 C 1.50172 * 109.89425 * 48.90034 * 19 18 16 21 21 O 1.21299 * 118.25027 * 162.44152 * 20 19 18 22 22 N 1.33356 * 123.50700 * 342.41427 * 20 19 18 23 23 C 1.40762 * 117.94764 * 182.22437 * 22 20 19 24 24 C 1.40254 * 126.08112 * 354.17986 * 23 22 20 25 25 N 1.30825 * 108.33730 * 179.97438 * 24 23 22 26 26 N 1.40075 * 108.36798 * 359.97438 * 25 24 23 27 27 C 1.46498 * 126.05119 * 180.02562 * 26 25 24 28 28 C 1.35756 * 126.08076 * 173.86795 * 23 22 20 29 29 C 1.45755 * 124.10517 * 2.22759 * 22 20 19 30 30 H 1.09001 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46753 * 299.99692 * 1 2 3 32 32 H 1.08992 * 109.46937 * 59.99863 * 1 2 3 33 33 H 1.09003 * 109.46753 * 240.00308 * 2 1 3 34 34 H 1.09000 * 109.47511 * 120.00311 * 2 1 3 35 35 H 0.97001 * 120.00030 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99683 * 94.99882 * 13 3 2 37 37 H 1.09000 * 109.67354 * 292.44213 * 18 16 14 38 38 H 1.09000 * 109.67525 * 52.94078 * 18 16 14 39 39 H 1.09008 * 109.40039 * 169.02996 * 19 18 16 40 40 H 1.09003 * 109.39943 * 288.76552 * 19 18 16 41 41 H 1.08002 * 125.82786 * 359.97438 * 24 23 22 42 42 H 1.09005 * 109.46803 * 89.98203 * 27 26 25 43 43 H 1.09001 * 109.47366 * 209.97798 * 27 26 25 44 44 H 1.08996 * 109.47231 * 329.98345 * 27 26 25 45 45 H 1.07998 * 126.21497 * 0.03104 * 28 23 22 46 46 H 1.09001 * 109.30121 * 220.61162 * 29 22 20 47 47 H 1.08993 * 109.30147 * 101.23563 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8887 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3819 10 1 6.5976 0.1472 -0.2351 11 1 6.3978 0.2176 -2.6510 12 1 6.4995 2.2814 -1.3822 13 7 1.6525 2.0974 1.2518 14 6 0.4374 2.6692 1.3651 15 8 -0.3373 2.6371 0.4324 16 6 0.0410 3.3483 2.6507 17 1 0.7308 4.1660 2.8600 18 6 0.0800 2.3351 3.8010 19 6 -0.1465 3.0864 5.1153 20 6 -1.3421 3.9865 4.9899 21 8 -1.8564 4.4028 6.0065 22 7 -1.8682 4.3529 3.8206 23 6 -2.9612 5.2398 3.8380 24 6 -3.6358 5.6971 4.9794 25 7 -4.5912 6.5047 4.5969 26 7 -4.5614 6.5931 3.1993 27 6 -5.4626 7.3935 2.3666 28 6 -3.5461 5.8092 2.7532 29 6 -1.3825 3.8927 2.5257 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8292 -0.0605 -2.9503 36 1 2.2720 2.1231 1.9977 37 1 -0.7057 1.5925 3.6627 38 1 1.0517 1.8416 3.8226 39 1 -0.3162 2.3687 5.9180 40 1 0.7347 3.6849 5.3468 41 1 -3.4057 5.4283 5.9999 42 1 -5.0388 8.3877 2.2245 43 1 -5.5876 6.9100 1.3977 44 1 -6.4318 7.4786 2.8580 45 1 -3.2577 5.6635 1.7227 46 1 -1.3894 4.7249 1.8218 47 1 -2.0380 3.1052 2.1542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935398974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:02 Heat of formation + Delta-G solvation = -9.206981 kcal Electronic energy + Delta-G solvation = -29355.464550 eV Core-core repulsion = 25346.330233 eV Total energy + Delta-G solvation = -4009.134317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.66891 -41.34207 -40.41554 -37.63310 -36.71666 -35.45077 -34.21258 -33.66861 -32.67285 -30.92986 -30.39615 -28.91414 -27.59345 -25.90682 -24.87356 -24.33135 -22.78999 -21.79560 -21.62153 -20.95266 -19.86671 -19.07922 -18.35332 -17.49707 -17.33569 -17.11670 -16.95048 -16.64975 -16.17246 -16.10069 -15.93359 -15.21980 -15.06424 -14.93112 -14.71451 -14.52148 -14.38181 -13.87909 -13.69004 -13.56281 -13.44816 -13.38556 -13.14785 -13.01990 -12.88179 -12.74403 -12.61314 -12.24533 -12.12827 -12.03729 -11.93763 -11.79417 -11.50420 -11.15466 -10.99304 -10.64767 -10.55246 -10.41906 -10.38795 -9.54965 -8.71295 -8.11626 -6.27904 0.71393 1.35258 1.41167 1.48833 1.49167 1.56675 1.88029 1.98330 2.06123 2.40106 2.67804 3.18409 3.47472 3.49288 3.69943 3.79923 3.80795 3.92836 4.24329 4.30421 4.33350 4.45149 4.45889 4.54446 4.58150 4.61334 4.65334 4.69752 4.70972 4.78613 4.84275 4.93968 5.01707 5.07284 5.14658 5.18955 5.34829 5.50960 5.63295 5.69106 5.78585 5.87518 5.99039 6.04487 6.24293 6.34929 6.63611 6.81275 7.05220 7.09773 7.39519 7.64960 8.93005 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.002630 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.908684 B =10643.515103 C =11244.415227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.280 3.720 4 H 0.001 0.999 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.964 3.036 10 H -0.265 1.265 11 H -0.291 1.291 12 H -0.272 1.272 13 N -0.700 5.700 14 C 0.513 3.487 15 O -0.582 6.582 16 C -0.112 4.112 17 H 0.126 0.874 18 C -0.111 4.111 19 C -0.115 4.115 20 C 0.506 3.494 21 O -0.578 6.578 22 N -0.514 5.514 23 C -0.030 4.030 24 C 0.040 3.960 25 N -0.320 5.320 26 N -0.374 5.374 27 C 0.096 3.904 28 C 0.033 3.967 29 C 0.136 3.864 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.405 0.595 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.200 0.800 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.205 0.795 46 H 0.090 0.910 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 8.595 10.985 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.019 0.981 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.789 3.211 10 H -0.190 1.190 11 H -0.217 1.217 12 H -0.198 1.198 13 N -0.348 5.348 14 C 0.299 3.701 15 O -0.463 6.463 16 C -0.134 4.134 17 H 0.144 0.856 18 C -0.149 4.149 19 C -0.155 4.155 20 C 0.298 3.702 21 O -0.459 6.459 22 N -0.238 5.238 23 C -0.134 4.134 24 C -0.146 4.146 25 N -0.144 5.144 26 N -0.159 5.159 27 C -0.043 4.043 28 C -0.115 4.115 29 C 0.014 3.986 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.240 0.760 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.216 0.784 42 H 0.106 0.894 43 H 0.132 0.868 44 H 0.112 0.888 45 H 0.221 0.779 46 H 0.108 0.892 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.596 9.467 10.932 18.536 hybrid contribution 1.750 -0.628 -0.675 1.978 sum -9.845 8.839 10.257 16.741 Atomic orbital electron populations 1.21676 0.96883 0.98997 1.00468 1.21777 0.93794 0.99244 1.01207 1.18320 0.93293 0.89145 0.81569 0.98147 1.21581 0.91730 1.38567 1.06474 0.90912 1.25696 1.02765 0.94614 0.95255 1.70037 1.36919 1.38521 1.09848 0.85527 0.79835 0.78350 0.77391 1.18996 1.21660 1.19765 1.46191 1.15624 1.55533 1.17499 1.20538 0.81897 0.78534 0.89134 1.90686 1.52206 1.61211 1.42205 1.21521 0.97696 1.00523 0.93624 0.85571 1.21703 1.05319 0.96811 0.91074 1.21666 0.95447 0.98605 0.99749 1.21002 0.86060 0.81519 0.81617 1.90518 1.62199 1.57147 1.36043 1.44469 1.28967 1.43018 1.07357 1.18095 0.97452 1.03749 0.94063 1.24689 0.92922 0.96052 1.00952 1.77316 1.23230 1.22961 0.90870 1.48707 1.26000 1.36693 1.04451 1.22228 0.92849 0.95242 0.94000 1.22473 0.92612 0.96564 0.99878 1.21216 0.94234 1.00651 0.82495 0.94084 0.93144 0.95586 0.91473 0.93935 0.92773 0.75976 0.90852 0.87604 0.85990 0.85416 0.78416 0.89358 0.86792 0.88767 0.77851 0.89175 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 8.52 71.98 0.61 -4.40 16 2 C -0.12 -5.47 5.45 30.59 0.17 -5.30 16 3 C 0.28 12.94 2.24 44.24 0.10 13.04 16 4 H 0.00 0.04 7.57 -2.39 -0.02 0.02 16 5 C -0.55 -26.63 8.73 25.60 0.22 -26.40 16 6 H 0.07 3.29 7.74 -2.91 -0.02 3.27 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.91 -50.07 11.29 21.45 0.24 -49.83 16 9 Si 0.96 40.07 29.54 68.60 2.03 42.09 16 10 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 11 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 13 N -0.70 -24.01 4.87 -446.11 -2.17 -26.18 16 14 C 0.51 16.13 5.74 87.66 0.50 16.63 16 15 O -0.58 -22.96 12.99 -3.04 -0.04 -23.00 16 16 C -0.11 -2.33 2.60 -11.45 -0.03 -2.36 16 17 H 0.13 2.16 8.12 -2.39 -0.02 2.14 16 18 C -0.11 -1.83 5.28 30.73 0.16 -1.67 16 19 C -0.12 -1.76 6.03 29.71 0.18 -1.58 16 20 C 0.51 11.93 7.44 87.71 0.65 12.58 16 21 O -0.58 -17.10 13.59 -3.09 -0.04 -17.15 16 22 N -0.51 -12.06 3.07 -636.50 -1.95 -14.01 16 23 C -0.03 -0.79 6.54 37.62 0.25 -0.54 16 24 C 0.04 1.14 10.68 85.33 0.91 2.05 16 25 N -0.32 -8.90 12.56 -56.77 -0.71 -9.61 16 26 N -0.37 -7.93 4.04 -368.48 -1.49 -9.42 16 27 C 0.10 1.05 11.48 127.77 1.47 2.51 16 28 C 0.03 0.70 10.61 83.50 0.89 1.59 16 29 C 0.14 2.99 4.70 86.49 0.41 3.39 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.90 5.66 -2.39 -0.01 1.89 16 32 H 0.02 1.15 7.85 -2.39 -0.02 1.13 16 33 H 0.07 3.49 5.95 -2.39 -0.01 3.48 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.40 11.29 7.91 -92.71 -0.73 10.56 16 37 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 38 H 0.11 1.46 7.41 -2.39 -0.02 1.44 16 39 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.20 6.06 5.69 -2.91 -0.02 6.05 16 42 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.20 3.06 7.24 -2.91 -0.02 3.04 16 46 H 0.09 1.88 7.00 -2.39 -0.02 1.86 16 47 H 0.07 1.82 7.78 -2.39 -0.02 1.80 16 Total: -1.00 -71.45 373.95 3.06 -68.39 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.26 Total: 27.86 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.93 Total: 10.86 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -6.08 Total: -109.05 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.08 Total: -40.15 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.09 kcal Total: -71.45 3.06 -68.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935398974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.182 kcal (2) G-P(sol) polarization free energy of solvation -71.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds