Wall clock time and date at job start Tue Mar 31 2020 18:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47464 * 2 1 4 4 C 1.52996 * 109.47312 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47164 * 179.97438 * 4 3 2 6 6 N 1.28392 * 119.10278 * 270.28084 * 5 4 3 7 7 C 1.31407 * 122.26386 * 180.25536 * 6 5 4 8 8 C 1.47890 * 119.88962 * 179.74444 * 7 6 5 9 9 O 1.21550 * 119.99463 * 179.72509 * 8 7 6 10 10 N 1.34776 * 120.00229 * 359.72213 * 8 7 6 11 11 C 1.46499 * 120.00077 * 179.97438 * 10 8 7 12 12 H 1.08994 * 110.88689 * 322.57390 * 11 10 8 13 13 C 1.55155 * 111.00231 * 198.65266 * 11 10 8 14 14 C 1.54330 * 102.94292 * 277.42746 * 13 11 10 15 15 N 1.47026 * 107.26840 * 337.81024 * 14 13 11 16 16 C 1.36935 * 125.64362 * 178.90400 * 15 14 13 17 17 H 1.08001 * 119.99939 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00563 * 0.02562 * 16 15 14 19 19 N 1.31620 * 119.99425 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00494 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46916 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47340 * 119.99904 * 20 18 16 23 23 H 1.48502 * 109.47284 * 240.00100 * 20 18 16 24 24 C 1.47420 * 108.70428 * 358.94103 * 15 14 13 25 25 C 1.41569 * 120.21486 * 359.46517 * 7 6 5 26 26 C 1.36332 * 118.23917 * 0.26092 * 25 7 6 27 27 C 1.34607 * 119.10137 * 90.00585 * 5 4 3 28 28 O 1.21984 * 120.22363 * 359.97438 * 27 5 4 29 29 H 1.09006 * 109.46686 * 59.99624 * 1 2 3 30 30 H 1.08995 * 109.47128 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47200 * 300.00174 * 1 2 3 32 32 H 1.09003 * 109.47200 * 239.99826 * 2 1 3 33 33 H 1.09002 * 109.47378 * 120.00223 * 2 1 3 34 34 H 1.09003 * 109.47054 * 59.99736 * 3 2 1 35 35 H 1.08998 * 109.47391 * 300.00156 * 3 2 1 36 36 H 1.09003 * 109.46985 * 60.00051 * 4 3 2 37 37 H 1.09002 * 109.47745 * 300.00355 * 4 3 2 38 38 H 0.97002 * 119.99742 * 0.02562 * 10 8 7 39 39 H 1.08998 * 110.71769 * 159.06867 * 13 11 10 40 40 H 1.08991 * 110.72382 * 35.79264 * 13 11 10 41 41 H 1.08998 * 109.88224 * 218.39343 * 14 13 11 42 42 H 1.08998 * 109.88221 * 97.22736 * 14 13 11 43 43 H 0.97001 * 119.99700 * 179.97438 * 19 18 16 44 44 H 1.08997 * 110.36858 * 142.96748 * 24 15 14 45 45 H 1.08997 * 110.36396 * 265.17736 * 24 15 14 46 46 H 1.08002 * 120.88458 * 180.27602 * 25 7 6 47 47 H 1.07996 * 121.03795 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 7 4.2619 3.4135 -1.1220 7 6 4.7036 4.6490 -1.1951 8 6 4.9249 5.2756 -2.5163 9 8 5.3288 6.4200 -2.5860 10 7 4.6790 4.5779 -3.6428 11 6 4.8977 5.1988 -4.9515 12 1 4.6121 6.2506 -4.9352 13 6 4.1362 4.4322 -6.0650 14 6 5.0900 3.2647 -6.3951 15 7 6.4369 3.6660 -5.9632 16 6 7.5675 2.8995 -6.0603 17 1 8.5138 3.2866 -5.7126 18 6 7.4973 1.6250 -6.6058 19 7 6.3441 1.1534 -7.0301 20 14 9.0394 0.5792 -6.7377 21 1 10.1974 1.3342 -6.1950 22 1 8.8563 -0.6731 -5.9608 23 1 9.2908 0.2453 -8.1627 24 6 6.3684 5.0297 -5.4074 25 6 4.9627 5.3840 -0.0132 26 6 4.7467 4.7735 1.1865 27 6 4.2763 3.4415 1.1759 28 8 4.0680 2.8555 2.2253 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9564 -0.8899 36 1 3.9337 0.9284 -0.8891 37 1 3.9331 0.9287 0.8908 38 1 4.3564 3.6648 -3.5870 39 1 3.9878 5.0675 -6.9382 40 1 3.1828 4.0578 -5.6926 41 1 5.0861 3.0749 -7.4684 42 1 4.7796 2.3690 -5.8570 43 1 6.2951 0.2629 -7.4116 44 1 7.0429 5.1270 -4.5567 45 1 6.6168 5.7643 -6.1733 46 1 5.3218 6.4015 -0.0607 47 1 4.9291 5.2922 2.1160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016227938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:31 Heat of formation + Delta-G solvation = 13.125342 kcal Electronic energy + Delta-G solvation = -29182.420116 eV Core-core repulsion = 25174.254202 eV Total energy + Delta-G solvation = -4008.165914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.33263 -39.69759 -37.93885 -37.28311 -36.37346 -34.29594 -33.87582 -32.20071 -31.33815 -29.78291 -29.15488 -27.36615 -26.05372 -24.99862 -24.40653 -23.18221 -21.72539 -21.44250 -20.15385 -19.90514 -18.78758 -18.14319 -16.99966 -16.73364 -16.72862 -16.15372 -15.88721 -15.69166 -14.81413 -14.67408 -14.48587 -14.12537 -13.98111 -13.83557 -13.60913 -13.44881 -13.19470 -13.14546 -12.84671 -12.42090 -11.97079 -11.90451 -11.83535 -11.76368 -11.62256 -11.42616 -10.99340 -10.93502 -10.89981 -10.75748 -10.60480 -10.47456 -10.14090 -10.10527 -10.00549 -9.83365 -9.71308 -8.89795 -8.71758 -8.55898 -6.84576 -5.74581 -3.06884 0.25387 0.99649 1.88478 2.74683 3.17545 3.37462 3.44118 3.45812 3.46562 3.78397 4.39899 4.47813 4.48773 4.55810 4.59147 4.68180 4.78210 4.97211 5.16294 5.21773 5.22174 5.32850 5.40011 5.43921 5.45043 5.45520 5.54263 5.63099 5.67347 5.72255 5.79119 5.79876 5.83838 5.91931 6.01281 6.13931 6.31668 6.44165 6.45010 6.65731 6.93565 7.30287 7.51176 7.53024 7.64989 7.77716 7.85333 8.22154 8.30430 9.19734 9.79599 10.44851 11.37437 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.003542 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.143505 B = 7902.667733 C = 9035.291507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.133 4.133 4 C 0.106 3.894 5 N -0.332 5.332 6 N -0.174 5.174 7 C 0.021 3.979 8 C 0.586 3.414 9 O -0.536 6.536 10 N -0.681 5.681 11 C 0.127 3.873 12 H 0.091 0.909 13 C -0.153 4.153 14 C 0.175 3.825 15 N -0.604 5.604 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.125 3.875 25 C -0.027 4.027 26 C -0.198 4.198 27 C 0.480 3.520 28 O -0.530 6.530 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.411 0.589 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.047 0.953 43 H 0.251 0.749 44 H 0.043 0.957 45 H 0.030 0.970 46 H 0.164 0.836 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.809 3.516 13.316 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.171 4.171 4 C -0.014 4.014 5 N -0.154 5.154 6 N -0.004 5.004 7 C -0.151 4.151 8 C 0.369 3.631 9 O -0.411 6.411 10 N -0.331 5.331 11 C 0.022 3.978 12 H 0.109 0.891 13 C -0.192 4.192 14 C 0.051 3.949 15 N -0.330 5.330 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.571 5.571 20 Si 0.740 3.260 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.002 4.002 25 C -0.051 4.051 26 C -0.227 4.227 27 C 0.279 3.721 28 O -0.408 6.408 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.247 0.753 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.181 0.819 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.831 3.038 13.267 17.394 hybrid contribution 0.956 -0.518 0.470 1.185 sum -9.875 2.520 13.738 17.105 Atomic orbital electron populations 1.21747 0.95330 1.01868 1.01949 1.21429 0.96388 0.95296 1.02752 1.21953 0.93162 0.98704 1.03320 1.22226 0.95697 0.77417 1.06020 1.46906 1.51038 1.14942 1.02507 1.71133 1.06296 1.10422 1.12588 1.21886 1.06226 0.90422 0.96521 1.17148 0.78387 0.85382 0.82215 1.90797 1.46855 1.17109 1.86375 1.45724 1.64813 1.17609 1.04957 1.22244 0.97825 0.96771 0.80986 0.89080 1.23227 0.99044 0.99839 0.97055 1.21183 0.82459 0.92011 0.99291 1.44476 1.05136 1.11661 1.71774 1.19095 0.86562 0.95214 1.34312 0.90521 1.24754 0.97057 0.97405 1.01171 1.69956 1.22612 1.17510 1.47001 0.86075 0.82246 0.80310 0.77339 1.20566 1.21848 1.21761 1.21939 0.93307 0.88734 0.96195 1.22254 0.90863 1.01625 0.90324 1.22661 1.05394 0.94294 1.00379 1.18117 0.80956 0.88998 0.84024 1.90959 1.53213 1.67205 1.29401 0.92513 0.92433 0.92786 0.91126 0.91530 0.91234 0.90780 0.87419 0.87391 0.75347 0.90692 0.91476 0.93696 0.93532 0.93877 0.93825 0.95226 0.81876 0.81508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.13 -1.20 5.54 -26.73 -0.15 -1.35 16 4 C 0.11 1.08 5.55 -4.04 -0.02 1.06 16 5 N -0.33 -4.11 3.22 -63.33 -0.20 -4.32 16 6 N -0.17 -2.28 10.11 33.41 0.34 -1.94 16 7 C 0.02 0.28 6.84 -82.83 -0.57 -0.29 16 8 C 0.59 9.05 7.81 -12.31 -0.10 8.95 16 9 O -0.54 -9.28 16.13 5.32 0.09 -9.20 16 10 N -0.68 -10.77 5.21 -52.66 -0.27 -11.05 16 11 C 0.13 2.13 3.32 -65.78 -0.22 1.91 16 12 H 0.09 1.42 7.73 -51.93 -0.40 1.02 16 13 C -0.15 -2.54 6.52 -24.89 -0.16 -2.71 16 14 C 0.18 3.93 5.36 -3.06 -0.02 3.92 16 15 N -0.60 -14.72 3.39 -170.08 -0.58 -15.30 16 16 C -0.22 -6.09 10.28 -15.06 -0.15 -6.24 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 19 N -0.92 -26.10 10.31 55.49 0.57 -25.53 16 20 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 C 0.13 2.56 6.93 -2.53 -0.02 2.54 16 25 C -0.03 -0.30 9.67 -39.00 -0.38 -0.68 16 26 C -0.20 -2.13 10.11 -39.12 -0.40 -2.53 16 27 C 0.48 6.30 7.47 -15.18 -0.11 6.19 16 28 O -0.53 -8.11 16.62 4.93 0.08 -8.03 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.11 1.08 7.36 -51.93 -0.38 0.70 16 38 H 0.41 6.39 7.95 -40.82 -0.32 6.07 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 42 H 0.05 1.14 7.38 -51.93 -0.38 0.76 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.16 1.52 7.72 -52.49 -0.41 1.12 16 47 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -32.05 390.13 -8.62 -40.68 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.33 Total: 3.35 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -2.17 Total: 8.65 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.15 Total: -58.13 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.17 Total: -17.22 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.05 -8.62 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016227938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.803 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds