Wall clock time and date at job start Tue Mar 31 2020 18:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47464 * 2 1 4 4 C 1.52996 * 109.47312 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47164 * 179.97438 * 4 3 2 6 6 N 1.28392 * 119.10278 * 270.28084 * 5 4 3 7 7 C 1.31407 * 122.26386 * 180.25536 * 6 5 4 8 8 C 1.47890 * 119.88962 * 179.74444 * 7 6 5 9 9 O 1.21550 * 119.99463 * 179.72509 * 8 7 6 10 10 N 1.34776 * 120.00229 * 359.72213 * 8 7 6 11 11 C 1.46499 * 120.00077 * 179.97438 * 10 8 7 12 12 H 1.08994 * 110.88689 * 322.57390 * 11 10 8 13 13 C 1.55155 * 111.00231 * 198.65266 * 11 10 8 14 14 C 1.54330 * 102.94292 * 277.42746 * 13 11 10 15 15 N 1.47026 * 107.26840 * 337.81024 * 14 13 11 16 16 C 1.36935 * 125.64362 * 178.90400 * 15 14 13 17 17 H 1.08001 * 119.99939 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00563 * 0.02562 * 16 15 14 19 19 N 1.31620 * 119.99425 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00494 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46916 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47340 * 119.99904 * 20 18 16 23 23 H 1.48502 * 109.47284 * 240.00100 * 20 18 16 24 24 C 1.47420 * 108.70428 * 358.94103 * 15 14 13 25 25 C 1.41569 * 120.21486 * 359.46517 * 7 6 5 26 26 C 1.36332 * 118.23917 * 0.26092 * 25 7 6 27 27 C 1.34607 * 119.10137 * 90.00585 * 5 4 3 28 28 O 1.21984 * 120.22363 * 359.97438 * 27 5 4 29 29 H 1.09006 * 109.46686 * 59.99624 * 1 2 3 30 30 H 1.08995 * 109.47128 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47200 * 300.00174 * 1 2 3 32 32 H 1.09003 * 109.47200 * 239.99826 * 2 1 3 33 33 H 1.09002 * 109.47378 * 120.00223 * 2 1 3 34 34 H 1.09003 * 109.47054 * 59.99736 * 3 2 1 35 35 H 1.08998 * 109.47391 * 300.00156 * 3 2 1 36 36 H 1.09003 * 109.46985 * 60.00051 * 4 3 2 37 37 H 1.09002 * 109.47745 * 300.00355 * 4 3 2 38 38 H 0.97002 * 119.99742 * 0.02562 * 10 8 7 39 39 H 1.08998 * 110.71769 * 159.06867 * 13 11 10 40 40 H 1.08991 * 110.72382 * 35.79264 * 13 11 10 41 41 H 1.08998 * 109.88224 * 218.39343 * 14 13 11 42 42 H 1.08998 * 109.88221 * 97.22736 * 14 13 11 43 43 H 0.97001 * 119.99700 * 179.97438 * 19 18 16 44 44 H 1.08997 * 110.36858 * 142.96748 * 24 15 14 45 45 H 1.08997 * 110.36396 * 265.17736 * 24 15 14 46 46 H 1.08002 * 120.88458 * 180.27602 * 25 7 6 47 47 H 1.07996 * 121.03795 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 7 4.2619 3.4135 -1.1220 7 6 4.7036 4.6490 -1.1951 8 6 4.9249 5.2756 -2.5163 9 8 5.3288 6.4200 -2.5860 10 7 4.6790 4.5779 -3.6428 11 6 4.8977 5.1988 -4.9515 12 1 4.6121 6.2506 -4.9352 13 6 4.1362 4.4322 -6.0650 14 6 5.0900 3.2647 -6.3951 15 7 6.4369 3.6660 -5.9632 16 6 7.5675 2.8995 -6.0603 17 1 8.5138 3.2866 -5.7126 18 6 7.4973 1.6250 -6.6058 19 7 6.3441 1.1534 -7.0301 20 14 9.0394 0.5792 -6.7377 21 1 10.1974 1.3342 -6.1950 22 1 8.8563 -0.6731 -5.9608 23 1 9.2908 0.2453 -8.1627 24 6 6.3684 5.0297 -5.4074 25 6 4.9627 5.3840 -0.0132 26 6 4.7467 4.7735 1.1865 27 6 4.2763 3.4415 1.1759 28 8 4.0680 2.8555 2.2253 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9564 -0.8899 36 1 3.9337 0.9284 -0.8891 37 1 3.9331 0.9287 0.8908 38 1 4.3564 3.6648 -3.5870 39 1 3.9878 5.0675 -6.9382 40 1 3.1828 4.0578 -5.6926 41 1 5.0861 3.0749 -7.4684 42 1 4.7796 2.3690 -5.8570 43 1 6.2951 0.2629 -7.4116 44 1 7.0429 5.1270 -4.5567 45 1 6.6168 5.7643 -6.1733 46 1 5.3218 6.4015 -0.0607 47 1 4.9291 5.2922 2.1160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016227938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:29 Heat of formation + Delta-G solvation = -7.354427 kcal Electronic energy + Delta-G solvation = -29183.308186 eV Core-core repulsion = 25174.254202 eV Total energy + Delta-G solvation = -4009.053984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.32333 -40.97953 -39.14336 -38.68789 -37.20819 -35.48919 -35.09059 -33.79156 -32.53961 -31.01916 -30.49345 -28.94393 -27.09048 -26.40908 -25.78357 -24.06235 -22.90308 -22.18061 -21.91116 -21.32056 -19.92871 -19.19005 -18.73367 -17.88838 -17.71784 -17.36693 -17.06665 -16.62645 -16.41220 -16.09943 -15.74179 -15.52293 -15.16832 -14.87453 -14.76059 -14.39995 -14.28615 -14.15349 -13.88957 -13.80442 -13.55639 -13.53546 -12.89612 -12.82360 -12.81660 -12.55115 -12.37634 -12.24116 -12.11101 -12.06401 -11.98746 -11.78670 -11.58950 -11.56690 -11.47010 -11.31764 -10.93431 -10.70030 -10.14647 -9.74026 -8.82683 -7.83158 -5.16269 -0.68605 -0.03558 0.93733 1.45569 1.46813 1.56089 1.64260 2.00628 2.39988 2.50286 2.77615 3.36104 3.51766 3.57722 3.69332 3.71300 3.74006 3.83447 3.87140 4.01038 4.11440 4.28648 4.36173 4.37399 4.48573 4.51252 4.61212 4.72035 4.73187 4.78346 4.82064 4.86332 4.90412 4.94963 5.00474 5.02707 5.08282 5.19285 5.27466 5.39767 5.47579 5.53441 5.71614 5.81109 6.23127 6.28835 6.44852 6.80089 7.05994 7.14909 7.80784 8.44143 9.26884 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.003542 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.143505 B = 7902.667733 C = 9035.291507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.123 4.123 4 C 0.100 3.900 5 N -0.331 5.331 6 N -0.181 5.181 7 C 0.013 3.987 8 C 0.590 3.410 9 O -0.553 6.553 10 N -0.684 5.684 11 C 0.141 3.859 12 H 0.114 0.886 13 C -0.133 4.133 14 C 0.183 3.817 15 N -0.621 5.621 16 C -0.238 4.238 17 H 0.073 0.927 18 C -0.058 4.058 19 N -0.945 5.945 20 Si 0.969 3.031 21 H -0.272 1.272 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.121 3.879 25 C -0.023 4.023 26 C -0.188 4.188 27 C 0.470 3.530 28 O -0.557 6.557 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.411 0.589 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.009 0.991 42 H 0.018 0.982 43 H 0.246 0.754 44 H 0.029 0.971 45 H 0.037 0.963 46 H 0.184 0.816 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 4.369 14.143 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.162 4.162 4 C -0.019 4.019 5 N -0.152 5.152 6 N -0.011 5.011 7 C -0.157 4.157 8 C 0.373 3.627 9 O -0.430 6.430 10 N -0.333 5.333 11 C 0.035 3.965 12 H 0.132 0.868 13 C -0.171 4.171 14 C 0.058 3.942 15 N -0.348 5.348 16 C -0.367 4.367 17 H 0.090 0.910 18 C -0.251 4.251 19 N -0.594 5.594 20 Si 0.798 3.202 21 H -0.197 1.197 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.005 4.005 25 C -0.046 4.046 26 C -0.217 4.217 27 C 0.270 3.730 28 O -0.437 6.437 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.248 0.752 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.027 0.973 42 H 0.037 0.963 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.055 0.945 46 H 0.201 0.799 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -11.300 3.917 14.095 18.485 hybrid contribution 1.126 -0.777 0.211 1.385 sum -10.174 3.139 14.306 17.834 Atomic orbital electron populations 1.21750 0.94861 1.02403 1.01873 1.21429 0.96764 0.94305 1.03147 1.21871 0.92169 0.99541 1.02605 1.22416 0.96521 0.76630 1.06311 1.47063 1.50425 1.15440 1.02260 1.71108 1.06557 1.10591 1.12891 1.21756 1.06854 0.90834 0.96291 1.17332 0.77574 0.85090 0.82668 1.90785 1.47560 1.17868 1.86782 1.45734 1.64959 1.17726 1.04909 1.22107 0.94976 0.98019 0.81369 0.86815 1.23084 0.98507 0.97656 0.97902 1.20965 0.83048 0.93610 0.96571 1.44711 1.05132 1.12970 1.71995 1.19365 0.87590 0.95842 1.33889 0.90954 1.25458 0.99643 0.98537 1.01460 1.70146 1.24107 1.17423 1.47700 0.85147 0.79501 0.78601 0.76913 1.19707 1.21905 1.21917 1.22091 0.95792 0.86930 0.95694 1.22376 0.90613 1.02270 0.89347 1.22898 1.04220 0.93151 1.01449 1.18529 0.80851 0.89821 0.83758 1.90946 1.54633 1.67981 1.30171 0.92666 0.91607 0.92804 0.90818 0.91055 0.92195 0.91108 0.86891 0.87281 0.75248 0.88635 0.88766 0.97284 0.96327 0.94419 0.95213 0.94545 0.79904 0.78811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.12 -1.71 5.93 30.59 0.18 -1.53 16 3 C -0.12 -2.16 5.54 30.59 0.17 -1.99 16 4 C 0.10 2.00 5.55 86.38 0.48 2.48 16 5 N -0.33 -7.92 3.22 -472.47 -1.52 -9.44 16 6 N -0.18 -4.55 10.11 -48.20 -0.49 -5.04 16 7 C 0.01 0.34 6.84 42.59 0.29 0.63 16 8 C 0.59 17.26 7.81 86.80 0.68 17.93 16 9 O -0.55 -18.10 16.13 -3.87 -0.06 -18.16 16 10 N -0.68 -20.61 5.21 -438.80 -2.29 -22.90 16 11 C 0.14 4.43 3.32 46.38 0.15 4.58 16 12 H 0.11 3.18 7.73 -2.39 -0.02 3.16 16 13 C -0.13 -4.16 6.52 31.78 0.21 -3.95 16 14 C 0.18 8.25 5.36 86.73 0.47 8.72 16 15 N -0.62 -30.49 3.39 -692.00 -2.35 -32.84 16 16 C -0.24 -13.10 10.28 84.03 0.86 -12.24 16 17 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 18 C -0.06 -3.19 5.49 84.86 0.47 -2.73 16 19 N -0.94 -54.52 10.31 21.65 0.22 -54.29 16 20 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 C 0.12 4.86 6.93 86.86 0.60 5.46 16 25 C -0.02 -0.46 9.67 22.65 0.22 -0.24 16 26 C -0.19 -3.66 10.11 22.57 0.23 -3.44 16 27 C 0.47 11.82 7.47 85.01 0.63 12.45 16 28 O -0.56 -16.65 16.62 -5.26 -0.09 -16.74 16 29 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.11 2.11 8.14 -2.39 -0.02 2.10 16 37 H 0.11 2.16 7.36 -2.39 -0.02 2.14 16 38 H 0.41 12.38 7.95 -92.71 -0.74 11.64 16 39 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.01 0.46 7.51 -2.39 -0.02 0.44 16 42 H 0.02 0.93 7.38 -2.39 -0.02 0.91 16 43 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.18 2.91 7.72 -2.91 -0.02 2.89 16 47 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -69.43 390.13 2.05 -67.38 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.24 Total: 19.92 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 6.35 Total: 24.83 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -6.42 Total: -124.50 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.15 Total: -34.90 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.43 2.05 -67.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016227938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.023 kcal (2) G-P(sol) polarization free energy of solvation -69.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds