Wall clock time and date at job start Tue Mar 31 2020 18:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47258 * 180.02562 * 4 3 2 6 6 N 1.28387 * 119.09530 * 269.99951 * 5 4 3 7 7 C 1.31409 * 122.25845 * 179.97438 * 6 5 4 8 8 C 1.47883 * 119.88818 * 180.02562 * 7 6 5 9 9 O 1.21552 * 120.00053 * 180.02562 * 8 7 6 10 10 N 1.34782 * 120.00362 * 359.97438 * 8 7 6 11 11 C 1.46498 * 120.00099 * 180.02562 * 10 8 7 12 12 H 1.08993 * 110.88698 * 31.11740 * 11 10 8 13 13 C 1.55156 * 111.00353 * 154.99919 * 11 10 8 14 14 C 1.54321 * 102.94348 * 153.57217 * 13 11 10 15 15 N 1.47025 * 107.27136 * 337.80939 * 14 13 11 16 16 C 1.36938 * 125.64849 * 178.95860 * 15 14 13 17 17 H 1.08000 * 119.99679 * 179.97438 * 16 15 14 18 18 C 1.38809 * 120.00144 * 359.97438 * 16 15 14 19 19 N 1.31619 * 119.99838 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00163 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46831 * 89.99697 * 20 18 16 22 22 H 1.48498 * 109.47242 * 210.00125 * 20 18 16 23 23 H 1.48499 * 109.47118 * 329.99927 * 20 18 16 24 24 C 1.47428 * 108.70317 * 358.93596 * 15 14 13 25 25 C 1.41571 * 120.21624 * 359.97438 * 7 6 5 26 26 C 1.36326 * 118.24170 * 359.97438 * 25 7 6 27 27 C 1.34608 * 119.10139 * 89.72269 * 5 4 3 28 28 O 1.21976 * 120.22541 * 0.02878 * 27 5 4 29 29 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 32 32 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 33 33 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 34 34 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 35 35 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 36 36 H 1.09001 * 109.46997 * 299.99574 * 4 3 2 37 37 H 1.08992 * 109.47534 * 59.99520 * 4 3 2 38 38 H 0.97001 * 119.99323 * 0.02562 * 10 8 7 39 39 H 1.08998 * 110.72016 * 271.93449 * 13 11 10 40 40 H 1.09001 * 110.72250 * 35.03247 * 13 11 10 41 41 H 1.09002 * 109.88593 * 97.22569 * 14 13 11 42 42 H 1.08999 * 109.88646 * 218.38973 * 14 13 11 43 43 H 0.96998 * 119.99896 * 180.02562 * 19 18 16 44 44 H 1.08995 * 110.36413 * 265.29409 * 24 15 14 45 45 H 1.09000 * 110.36624 * 142.96721 * 24 15 14 46 46 H 1.08000 * 120.88070 * 179.97438 * 25 7 6 47 47 H 1.08001 * 121.03663 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 7 4.2661 3.4130 -1.1216 7 6 4.7030 4.6502 -1.1936 8 6 4.9236 5.2782 -2.5142 9 8 5.3281 6.4224 -2.5831 10 7 4.6771 4.5816 -3.6414 11 6 4.8963 5.2035 -4.9495 12 1 5.7100 5.9273 -4.9043 13 6 5.1661 4.1305 -6.0372 14 6 4.6959 4.8254 -7.3324 15 7 3.7523 5.8833 -6.9424 16 6 3.1224 6.7464 -7.7989 17 1 2.4435 7.4918 -7.4117 18 6 3.3563 6.6632 -9.1646 19 7 4.1840 5.7550 -9.6363 20 14 2.4965 7.8401 -10.3329 21 1 3.3314 9.0545 -10.5154 22 1 2.2955 7.1757 -11.6457 23 1 1.1791 8.2256 -9.7665 24 6 3.5962 5.8606 -5.4766 25 6 4.9620 5.3843 -0.0111 26 6 4.7455 4.7730 1.1881 27 6 4.2718 3.4422 1.1764 28 8 4.0605 2.8564 2.2252 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.9337 0.9286 0.8892 37 1 3.9330 0.9288 -0.8907 38 1 4.3547 3.6684 -3.5863 39 1 6.2288 3.8941 -6.0905 40 1 4.5815 3.2309 -5.8450 41 1 5.5499 5.2627 -7.8497 42 1 4.1973 4.1042 -7.9801 43 1 4.3478 5.6971 -10.5906 44 1 2.7286 5.2630 -5.1968 45 1 3.5000 6.8751 -5.0896 46 1 5.3217 6.4015 -0.0577 47 1 4.9287 5.2907 2.1181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016227942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:35 Heat of formation + Delta-G solvation = 13.720477 kcal Electronic energy + Delta-G solvation = -28484.064085 eV Core-core repulsion = 24475.923978 eV Total energy + Delta-G solvation = -4008.140107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.49403 -39.79030 -38.06125 -37.32345 -36.52089 -34.44897 -34.17058 -32.27362 -31.50218 -29.92377 -29.14487 -27.30598 -26.14349 -25.13323 -24.38454 -23.28691 -21.73476 -21.52037 -20.41984 -20.06723 -18.89819 -18.27602 -17.11360 -16.89865 -16.79668 -16.32404 -15.92043 -15.82466 -14.91593 -14.70069 -14.51715 -14.26736 -14.19999 -13.98854 -13.66925 -13.53585 -13.32733 -12.97795 -12.86231 -12.46326 -12.27948 -12.01198 -11.92857 -11.83192 -11.77064 -11.55101 -11.07108 -11.03632 -10.93639 -10.78818 -10.74605 -10.51180 -10.23093 -10.11758 -9.95534 -9.94174 -9.72276 -9.00415 -8.78917 -8.61210 -6.86113 -5.72981 -3.06638 0.09113 0.84477 1.71260 2.60265 3.00532 3.30123 3.40731 3.45813 3.47409 3.61327 4.25204 4.32774 4.41581 4.44121 4.49037 4.55148 4.63591 4.81719 4.97267 5.07806 5.18778 5.22228 5.29694 5.31727 5.40702 5.41350 5.50542 5.52664 5.58953 5.67055 5.70625 5.72324 5.75540 5.78805 5.89600 6.12214 6.27483 6.38841 6.50347 6.64141 6.88784 7.14915 7.46249 7.53176 7.55630 7.67122 7.79862 8.14173 8.23828 9.20179 9.80001 10.44432 11.38924 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.002499 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.638004 B =11200.515964 C =12400.608604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.136 4.136 4 C 0.108 3.892 5 N -0.334 5.334 6 N -0.180 5.180 7 C 0.024 3.976 8 C 0.584 3.416 9 O -0.525 6.525 10 N -0.695 5.695 11 C 0.125 3.875 12 H 0.101 0.899 13 C -0.149 4.149 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.227 4.227 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.129 3.871 25 C -0.029 4.029 26 C -0.195 4.195 27 C 0.480 3.520 28 O -0.527 6.527 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.406 0.594 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.253 0.747 44 H 0.021 0.979 45 H 0.044 0.956 46 H 0.165 0.835 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 -10.889 20.942 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.174 4.174 4 C -0.012 4.012 5 N -0.156 5.156 6 N -0.011 5.011 7 C -0.148 4.148 8 C 0.366 3.634 9 O -0.399 6.399 10 N -0.345 5.345 11 C 0.020 3.980 12 H 0.119 0.881 13 C -0.188 4.188 14 C 0.054 3.946 15 N -0.330 5.330 16 C -0.355 4.355 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.002 3.998 25 C -0.052 4.052 26 C -0.225 4.225 27 C 0.279 3.721 28 O -0.405 6.405 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.241 0.759 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.183 0.817 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.342 -11.103 20.741 23.528 hybrid contribution -0.400 0.745 -0.045 0.847 sum -0.743 -10.357 20.696 23.155 Atomic orbital electron populations 1.21758 0.95220 1.01933 1.02137 1.21418 0.96529 0.95197 1.02562 1.21981 0.93081 0.98768 1.03581 1.22198 0.95817 0.77399 1.05741 1.46908 1.51239 1.14926 1.02544 1.71064 1.06507 1.10755 1.12747 1.21912 1.05994 0.90348 0.96550 1.17206 0.78494 0.85464 0.82196 1.90848 1.46178 1.16646 1.86191 1.45887 1.65728 1.17350 1.05497 1.22449 0.99986 0.96085 0.79490 0.88098 1.23194 1.00913 0.97432 0.97258 1.21156 0.93451 0.89962 0.90024 1.44388 1.51479 1.37596 0.99581 1.19067 1.19797 1.09429 0.87232 0.90354 1.24801 0.99759 0.99125 0.96739 1.69941 1.38905 1.35791 1.12453 0.86098 0.78981 0.80121 0.80442 1.21542 1.21682 1.20687 1.21823 0.93632 0.98128 0.86232 1.22280 0.90943 1.01689 0.90283 1.22691 1.05032 0.94255 1.00474 1.18117 0.80974 0.88999 0.83984 1.90968 1.53016 1.67116 1.29425 0.92399 0.92691 0.92416 0.91542 0.91309 0.90682 0.91084 0.87408 0.87689 0.75908 0.91474 0.91913 0.93144 0.93516 0.93715 0.96167 0.93739 0.81749 0.81402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.69 5.93 -26.73 -0.16 -0.85 16 3 C -0.14 -0.99 5.54 -26.73 -0.15 -1.13 16 4 C 0.11 0.81 5.55 -4.04 -0.02 0.79 16 5 N -0.33 -3.32 3.22 -63.33 -0.20 -3.52 16 6 N -0.18 -1.86 10.10 33.41 0.34 -1.52 16 7 C 0.02 0.27 6.84 -82.83 -0.57 -0.30 16 8 C 0.58 8.09 7.81 -12.31 -0.10 8.00 16 9 O -0.52 -8.87 16.02 5.32 0.09 -8.79 16 10 N -0.69 -9.46 5.19 -52.66 -0.27 -9.74 16 11 C 0.12 2.13 3.42 -65.78 -0.23 1.91 16 12 H 0.10 1.88 7.54 -51.93 -0.39 1.49 16 13 C -0.15 -2.55 6.60 -24.90 -0.16 -2.71 16 14 C 0.18 4.17 5.37 -3.06 -0.02 4.15 16 15 N -0.60 -15.20 3.39 -170.07 -0.58 -15.78 16 16 C -0.23 -6.30 10.28 -15.06 -0.15 -6.46 16 17 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 18 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -26.69 10.31 55.49 0.57 -26.12 16 20 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.13 2.67 6.93 -2.53 -0.02 2.65 16 25 C -0.03 -0.27 9.67 -39.00 -0.38 -0.65 16 26 C -0.19 -1.80 10.11 -39.12 -0.40 -2.19 16 27 C 0.48 5.38 7.46 -15.18 -0.11 5.27 16 28 O -0.53 -7.15 16.62 4.94 0.08 -7.06 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 0.80 7.36 -51.93 -0.38 0.42 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.41 4.65 7.90 -40.82 -0.32 4.33 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.95 8.00 -51.93 -0.42 0.54 16 41 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 42 H 0.05 1.20 7.51 -51.93 -0.39 0.81 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.16 1.35 7.72 -52.49 -0.41 0.95 16 47 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 389.81 15.07 5.87 5.87 Total: -1.00 -32.93 389.81 -8.62 -41.55 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.31 Total: 0.55 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -2.18 Total: 7.59 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.14 Total: -56.68 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.17 Total: -15.85 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.93 -8.62 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016227942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.267 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds