Wall clock time and date at job start Tue Mar 31 2020 18:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47258 * 180.02562 * 4 3 2 6 6 N 1.28387 * 119.09530 * 269.99951 * 5 4 3 7 7 C 1.31409 * 122.25845 * 179.97438 * 6 5 4 8 8 C 1.47883 * 119.88818 * 180.02562 * 7 6 5 9 9 O 1.21552 * 120.00053 * 180.02562 * 8 7 6 10 10 N 1.34782 * 120.00362 * 359.97438 * 8 7 6 11 11 C 1.46498 * 120.00099 * 180.02562 * 10 8 7 12 12 H 1.08993 * 110.88698 * 31.11740 * 11 10 8 13 13 C 1.55156 * 111.00353 * 154.99919 * 11 10 8 14 14 C 1.54321 * 102.94348 * 153.57217 * 13 11 10 15 15 N 1.47025 * 107.27136 * 337.80939 * 14 13 11 16 16 C 1.36938 * 125.64849 * 178.95860 * 15 14 13 17 17 H 1.08000 * 119.99679 * 179.97438 * 16 15 14 18 18 C 1.38809 * 120.00144 * 359.97438 * 16 15 14 19 19 N 1.31619 * 119.99838 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00163 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46831 * 89.99697 * 20 18 16 22 22 H 1.48498 * 109.47242 * 210.00125 * 20 18 16 23 23 H 1.48499 * 109.47118 * 329.99927 * 20 18 16 24 24 C 1.47428 * 108.70317 * 358.93596 * 15 14 13 25 25 C 1.41571 * 120.21624 * 359.97438 * 7 6 5 26 26 C 1.36326 * 118.24170 * 359.97438 * 25 7 6 27 27 C 1.34608 * 119.10139 * 89.72269 * 5 4 3 28 28 O 1.21976 * 120.22541 * 0.02878 * 27 5 4 29 29 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 32 32 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 33 33 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 34 34 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 35 35 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 36 36 H 1.09001 * 109.46997 * 299.99574 * 4 3 2 37 37 H 1.08992 * 109.47534 * 59.99520 * 4 3 2 38 38 H 0.97001 * 119.99323 * 0.02562 * 10 8 7 39 39 H 1.08998 * 110.72016 * 271.93449 * 13 11 10 40 40 H 1.09001 * 110.72250 * 35.03247 * 13 11 10 41 41 H 1.09002 * 109.88593 * 97.22569 * 14 13 11 42 42 H 1.08999 * 109.88646 * 218.38973 * 14 13 11 43 43 H 0.96998 * 119.99896 * 180.02562 * 19 18 16 44 44 H 1.08995 * 110.36413 * 265.29409 * 24 15 14 45 45 H 1.09000 * 110.36624 * 142.96721 * 24 15 14 46 46 H 1.08000 * 120.88070 * 179.97438 * 25 7 6 47 47 H 1.08001 * 121.03663 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 7 4.2661 3.4130 -1.1216 7 6 4.7030 4.6502 -1.1936 8 6 4.9236 5.2782 -2.5142 9 8 5.3281 6.4224 -2.5831 10 7 4.6771 4.5816 -3.6414 11 6 4.8963 5.2035 -4.9495 12 1 5.7100 5.9273 -4.9043 13 6 5.1661 4.1305 -6.0372 14 6 4.6959 4.8254 -7.3324 15 7 3.7523 5.8833 -6.9424 16 6 3.1224 6.7464 -7.7989 17 1 2.4435 7.4918 -7.4117 18 6 3.3563 6.6632 -9.1646 19 7 4.1840 5.7550 -9.6363 20 14 2.4965 7.8401 -10.3329 21 1 3.3314 9.0545 -10.5154 22 1 2.2955 7.1757 -11.6457 23 1 1.1791 8.2256 -9.7665 24 6 3.5962 5.8606 -5.4766 25 6 4.9620 5.3843 -0.0111 26 6 4.7455 4.7730 1.1881 27 6 4.2718 3.4422 1.1764 28 8 4.0605 2.8564 2.2252 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.9337 0.9286 0.8892 37 1 3.9330 0.9288 -0.8907 38 1 4.3547 3.6684 -3.5863 39 1 6.2288 3.8941 -6.0905 40 1 4.5815 3.2309 -5.8450 41 1 5.5499 5.2627 -7.8497 42 1 4.1973 4.1042 -7.9801 43 1 4.3478 5.6971 -10.5906 44 1 2.7286 5.2630 -5.1968 45 1 3.5000 6.8751 -5.0896 46 1 5.3217 6.4015 -0.0577 47 1 4.9287 5.2907 2.1181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016227942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:33 Heat of formation + Delta-G solvation = -7.882218 kcal Electronic energy + Delta-G solvation = -28485.000848 eV Core-core repulsion = 24475.923978 eV Total energy + Delta-G solvation = -4009.076871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.32384 -40.98392 -39.14745 -38.73120 -37.19929 -35.71416 -35.09238 -33.88442 -32.59704 -31.02906 -30.50096 -28.86040 -27.10070 -26.40000 -25.72511 -24.01888 -22.81146 -22.16141 -22.00555 -21.65993 -19.92180 -19.21543 -18.76963 -17.87652 -17.70914 -17.41803 -17.03849 -16.64127 -16.39911 -16.11505 -15.79318 -15.66902 -15.01556 -14.85701 -14.67717 -14.38856 -14.17989 -14.13307 -14.10496 -13.89728 -13.68263 -13.53655 -12.94533 -12.84712 -12.76041 -12.54848 -12.39647 -12.34978 -12.12861 -12.05580 -12.02196 -11.79561 -11.55655 -11.54173 -11.46609 -11.35768 -10.95865 -10.69762 -10.20257 -9.73383 -8.89549 -7.84532 -5.20217 -0.70151 -0.04664 0.93388 1.47628 1.49453 1.57790 1.62650 1.89218 2.37813 2.51195 2.74639 3.34416 3.50864 3.53875 3.69085 3.70048 3.75719 3.86874 3.92172 4.03547 4.06951 4.23939 4.31821 4.41121 4.48638 4.51799 4.62017 4.63413 4.73591 4.74415 4.83278 4.89367 4.91042 4.92223 5.00307 5.02298 5.07718 5.21007 5.29548 5.41554 5.44564 5.48574 5.67253 5.76976 6.20689 6.28078 6.42270 6.79111 7.04795 7.11745 7.77125 8.39930 9.25501 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.002499 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.638004 B =11200.515964 C =12400.608604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.129 4.129 4 C 0.102 3.898 5 N -0.329 5.329 6 N -0.171 5.171 7 C 0.016 3.984 8 C 0.590 3.410 9 O -0.556 6.556 10 N -0.684 5.684 11 C 0.145 3.855 12 H 0.087 0.913 13 C -0.128 4.128 14 C 0.184 3.816 15 N -0.626 5.626 16 C -0.244 4.244 17 H 0.079 0.921 18 C -0.063 4.063 19 N -0.948 5.948 20 Si 0.978 3.022 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.270 1.270 24 C 0.127 3.873 25 C -0.026 4.026 26 C -0.188 4.188 27 C 0.471 3.529 28 O -0.555 6.555 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.419 0.581 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.015 0.985 42 H 0.016 0.984 43 H 0.248 0.752 44 H 0.031 0.969 45 H 0.031 0.969 46 H 0.178 0.822 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.366 -11.783 22.229 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.168 4.168 4 C -0.017 4.017 5 N -0.151 5.151 6 N -0.002 5.002 7 C -0.154 4.154 8 C 0.373 3.627 9 O -0.432 6.432 10 N -0.335 5.335 11 C 0.039 3.961 12 H 0.105 0.895 13 C -0.167 4.167 14 C 0.059 3.941 15 N -0.353 5.353 16 C -0.373 4.373 17 H 0.096 0.904 18 C -0.256 4.256 19 N -0.597 5.597 20 Si 0.806 3.194 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.195 1.195 24 C 0.001 3.999 25 C -0.049 4.049 26 C -0.218 4.218 27 C 0.272 3.728 28 O -0.436 6.436 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.128 0.872 37 H 0.146 0.854 38 H 0.257 0.743 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.050 0.950 46 H 0.195 0.805 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.470 -12.020 22.059 25.126 hybrid contribution -0.408 0.993 -0.392 1.143 sum -0.878 -11.027 21.667 24.328 Atomic orbital electron populations 1.21778 0.95515 1.02326 1.01640 1.21410 0.96226 0.94251 1.03451 1.21911 0.92893 0.99553 1.02397 1.22457 0.95894 0.76330 1.06976 1.47105 1.50266 1.15565 1.02149 1.71039 1.05976 1.10411 1.12794 1.21549 1.07255 0.90976 0.95644 1.17426 0.77418 0.84958 0.82850 1.90841 1.47442 1.18121 1.86768 1.45629 1.65841 1.17853 1.04189 1.21939 0.97394 0.95695 0.81057 0.89488 1.23005 1.02695 0.97514 0.93492 1.20945 0.91542 0.89033 0.92616 1.44671 1.51547 1.37670 1.01375 1.19415 1.19916 1.09860 0.88136 0.90360 1.25613 1.00793 1.00906 0.98261 1.70150 1.40112 1.37199 1.12256 0.85096 0.78294 0.77956 0.78083 1.21370 1.21826 1.19532 1.21948 0.95894 0.98058 0.84041 1.22349 0.90780 1.02145 0.89596 1.22882 1.04151 0.93405 1.01321 1.18460 0.80836 0.89647 0.83892 1.90958 1.54426 1.67864 1.30311 0.91576 0.93246 0.92887 0.90979 0.90067 0.91240 0.92829 0.87195 0.85447 0.74251 0.89050 0.89121 0.96677 0.96553 0.94262 0.95091 0.95029 0.80470 0.79178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.12 -1.13 5.93 30.60 0.18 -0.95 16 3 C -0.13 -1.69 5.54 30.59 0.17 -1.52 16 4 C 0.10 1.32 5.55 86.38 0.48 1.80 16 5 N -0.33 -5.86 3.22 -472.48 -1.52 -7.38 16 6 N -0.17 -3.12 10.10 -48.20 -0.49 -3.60 16 7 C 0.02 0.33 6.84 42.58 0.29 0.62 16 8 C 0.59 15.27 7.81 86.80 0.68 15.95 16 9 O -0.56 -18.18 16.02 -3.88 -0.06 -18.24 16 10 N -0.68 -17.10 5.19 -438.78 -2.28 -19.37 16 11 C 0.15 4.77 3.42 46.38 0.16 4.93 16 12 H 0.09 3.18 7.54 -2.39 -0.02 3.16 16 13 C -0.13 -4.15 6.60 31.78 0.21 -3.94 16 14 C 0.18 8.68 5.37 86.73 0.47 9.14 16 15 N -0.63 -31.93 3.39 -691.98 -2.35 -34.28 16 16 C -0.24 -13.77 10.28 84.03 0.86 -12.91 16 17 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 18 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 19 N -0.95 -56.23 10.31 21.65 0.22 -56.00 16 20 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.13 5.20 6.93 86.86 0.60 5.80 16 25 C -0.03 -0.43 9.67 22.65 0.22 -0.21 16 26 C -0.19 -3.07 10.11 22.57 0.23 -2.84 16 27 C 0.47 9.76 7.46 85.01 0.63 10.39 16 28 O -0.56 -14.40 16.62 -5.24 -0.09 -14.49 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.11 1.43 7.36 -2.39 -0.02 1.41 16 37 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.42 8.30 7.90 -92.71 -0.73 7.56 16 39 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.09 2.46 8.00 -2.39 -0.02 2.44 16 41 H 0.01 0.80 7.38 -2.39 -0.02 0.78 16 42 H 0.02 0.85 7.51 -2.39 -0.02 0.84 16 43 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.18 2.54 7.72 -2.91 -0.02 2.52 16 47 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -72.70 389.81 2.07 -70.62 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.25 Total: 12.80 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 6.36 Total: 22.21 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -6.41 Total: -120.64 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.15 Total: -32.73 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -72.70 2.07 -70.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016227942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.741 kcal (2) G-P(sol) polarization free energy of solvation -72.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds