Wall clock time and date at job start Tue Mar 31 2020 18:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47294 * 179.97438 * 4 3 2 6 6 N 1.28384 * 119.10175 * 269.72820 * 5 4 3 7 7 C 1.31414 * 122.26665 * 179.74856 * 6 5 4 8 8 C 1.47882 * 119.89127 * 180.24551 * 7 6 5 9 9 O 1.21559 * 119.99981 * 180.26834 * 8 7 6 10 10 N 1.34775 * 120.00489 * 0.27629 * 8 7 6 11 11 C 1.47430 * 125.64522 * 0.02562 * 10 8 7 12 12 C 1.54907 * 104.83070 * 204.09533 * 11 10 8 13 13 C 1.55155 * 101.58437 * 322.99243 * 12 11 10 14 14 H 1.09007 * 110.71875 * 277.13983 * 13 12 11 15 15 N 1.46497 * 110.72425 * 153.86503 * 13 12 11 16 16 C 1.36935 * 120.00016 * 154.99560 * 15 13 12 17 17 H 1.08001 * 120.00488 * 0.02562 * 16 15 13 18 18 C 1.38816 * 119.99897 * 180.02562 * 16 15 13 19 19 N 1.31616 * 120.00072 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00039 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46688 * 60.00339 * 20 18 16 22 22 H 1.48496 * 109.46994 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47096 * 300.00243 * 20 18 16 24 24 C 1.47023 * 125.64997 * 179.71591 * 10 8 7 25 25 C 1.41568 * 120.21184 * 0.52179 * 7 6 5 26 26 C 1.36330 * 118.23955 * 359.74808 * 25 7 6 27 27 C 1.34606 * 119.10222 * 89.99630 * 5 4 3 28 28 O 1.21985 * 120.22872 * 359.95943 * 27 5 4 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 36 36 H 1.09001 * 109.47289 * 299.99953 * 4 3 2 37 37 H 1.09004 * 109.47261 * 59.99697 * 4 3 2 38 38 H 1.08997 * 110.36611 * 322.93216 * 11 10 8 39 39 H 1.08996 * 110.36690 * 85.25989 * 11 10 8 40 40 H 1.09003 * 111.00540 * 81.06397 * 12 11 10 41 41 H 1.08999 * 111.00884 * 204.88175 * 12 11 10 42 42 H 0.96996 * 119.99812 * 335.00038 * 15 13 12 43 43 H 0.97002 * 120.00358 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.88011 * 298.38743 * 24 10 8 45 45 H 1.08994 * 109.88158 * 59.55719 * 24 10 8 46 46 H 1.08001 * 120.88180 * 179.77121 * 25 7 6 47 47 H 1.08001 * 121.03273 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8237 0.0000 6 7 4.2720 3.4100 -1.1220 7 6 4.7051 4.6485 -1.1951 8 6 4.9284 5.2744 -2.5162 9 8 5.3337 6.4183 -2.5862 10 7 4.6824 4.5767 -3.6428 11 6 4.1899 3.1884 -3.7033 12 6 4.6540 2.6629 -5.0846 13 6 4.4815 3.9240 -5.9717 14 1 3.4481 4.0232 -6.3043 15 7 5.3942 3.8811 -7.1169 16 6 5.0902 4.5695 -8.2609 17 1 4.1778 5.1444 -8.3189 18 6 5.9547 4.5283 -9.3462 19 7 7.0664 3.8273 -9.2758 20 14 5.5404 5.4680 -10.9066 21 1 5.4229 6.9155 -10.5962 22 1 6.6165 5.2619 -11.9090 23 1 4.2522 4.9731 -11.4551 24 6 4.8545 5.0761 -5.0148 25 6 4.9643 5.3835 -0.0133 26 6 4.7473 4.7734 1.1864 27 6 4.2760 3.4417 1.1759 28 8 4.0674 2.8560 2.2254 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.9330 0.9289 0.8909 37 1 3.9337 0.9285 -0.8891 38 1 4.6315 2.5940 -2.9034 39 1 3.1022 3.1685 -3.6358 40 1 5.6969 2.3475 -5.0524 41 1 4.0131 1.8514 -5.4294 42 1 6.2138 3.3649 -7.0647 43 1 7.6708 3.7988 -10.0340 44 1 4.1971 5.9289 -5.1841 45 1 5.8924 5.3676 -5.1757 46 1 5.3240 6.4007 -0.0608 47 1 4.9297 5.2922 2.1159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019760685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:03 Heat of formation + Delta-G solvation = 12.372814 kcal Electronic energy + Delta-G solvation = -28886.526777 eV Core-core repulsion = 24878.328231 eV Total energy + Delta-G solvation = -4008.198547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.46764 -39.85247 -38.01136 -37.44124 -36.48876 -34.39364 -34.22067 -32.19025 -31.28555 -29.89838 -29.62176 -27.62746 -26.21108 -25.13868 -23.99915 -23.19669 -22.63305 -21.64056 -20.70165 -19.86960 -18.68006 -17.84996 -17.22431 -16.97641 -16.86824 -16.26448 -15.97915 -15.81329 -15.43567 -14.66793 -14.39480 -14.23533 -14.03545 -13.76098 -13.59568 -13.48303 -13.31485 -13.26573 -12.98032 -12.71522 -12.69463 -12.05233 -11.92891 -11.84449 -11.77475 -11.56626 -11.41222 -11.18557 -11.02542 -10.84786 -10.77772 -10.71545 -10.38283 -10.25709 -10.07361 -9.85318 -9.76744 -9.02818 -8.89905 -8.41933 -7.12194 -5.86237 -3.17322 0.12877 0.88964 1.76052 2.65059 2.94690 3.33487 3.40254 3.45184 3.45673 3.63011 4.27822 4.31297 4.43069 4.44060 4.50306 4.52369 4.59324 4.83246 4.96489 5.00413 5.08921 5.18313 5.21830 5.29459 5.32196 5.35249 5.42379 5.51632 5.53808 5.57894 5.64945 5.69702 5.71947 5.79304 5.85207 5.89988 5.97705 6.08604 6.27114 6.33840 6.45900 6.60971 6.82790 7.19589 7.58481 7.62383 7.65989 8.13125 8.31200 9.43113 9.96165 10.30768 11.35614 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.002675 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.483149 B =10463.147811 C =11857.790927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.134 4.134 4 C 0.108 3.892 5 N -0.338 5.338 6 N -0.175 5.175 7 C 0.027 3.973 8 C 0.591 3.409 9 O -0.533 6.533 10 N -0.590 5.590 11 C 0.102 3.898 12 C -0.144 4.144 13 C 0.172 3.828 14 H 0.069 0.931 15 N -0.711 5.711 16 C -0.251 4.251 17 H 0.073 0.927 18 C -0.008 4.008 19 N -0.930 5.930 20 Si 0.909 3.091 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.080 3.920 25 C -0.028 4.028 26 C -0.195 4.195 27 C 0.480 3.520 28 O -0.529 6.529 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.387 0.613 43 H 0.258 0.742 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.164 0.836 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.507 -6.218 21.045 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.173 4.173 4 C -0.012 4.012 5 N -0.159 5.159 6 N -0.005 5.005 7 C -0.145 4.145 8 C 0.375 3.625 9 O -0.409 6.409 10 N -0.322 5.322 11 C -0.021 4.021 12 C -0.183 4.183 13 C 0.059 3.941 14 H 0.087 0.913 15 N -0.351 5.351 16 C -0.382 4.382 17 H 0.091 0.909 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.045 4.045 25 C -0.052 4.052 26 C -0.225 4.225 27 C 0.279 3.721 28 O -0.407 6.407 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.181 0.819 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.691 -6.558 20.981 24.023 hybrid contribution 0.357 1.043 -0.248 1.130 sum -9.333 -5.516 20.733 23.396 Atomic orbital electron populations 1.21753 0.95273 1.01917 1.02048 1.21422 0.96463 0.95231 1.02642 1.21965 0.93110 0.98713 1.03475 1.22192 0.95778 0.77444 1.05758 1.47026 1.51063 1.15143 1.02699 1.71487 1.06849 1.10557 1.11591 1.21894 1.05932 0.90303 0.96351 1.16869 0.79132 0.85058 0.81394 1.90832 1.47265 1.16889 1.85882 1.48414 1.62693 1.14964 1.06147 1.22616 0.98942 0.81777 0.98749 1.23150 1.02356 0.99029 0.93773 1.21213 0.95247 0.90474 0.87118 0.91321 1.42367 1.23785 1.58604 1.10318 1.19223 1.04511 1.23451 0.90984 0.90931 1.24775 0.96824 1.00302 0.98533 1.69646 1.12134 1.44439 1.31474 0.86249 0.77206 0.79667 0.82937 1.21077 1.21641 1.21131 1.23398 1.02647 0.99802 0.78605 1.22258 0.90965 1.01671 0.90269 1.22684 1.05113 0.94297 1.00375 1.18119 0.80948 0.88992 0.84068 1.90965 1.53121 1.67174 1.29445 0.92407 0.92470 0.92740 0.91539 0.91229 0.90743 0.91153 0.87450 0.87696 0.89185 0.91432 0.90599 0.89983 0.77832 0.93258 0.91909 0.90535 0.81869 0.81463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.68 5.93 -26.73 -0.16 -0.84 16 3 C -0.13 -0.95 5.54 -26.73 -0.15 -1.10 16 4 C 0.11 0.83 5.55 -4.05 -0.02 0.81 16 5 N -0.34 -3.46 3.22 -63.33 -0.20 -3.66 16 6 N -0.17 -1.91 7.18 33.41 0.24 -1.67 16 7 C 0.03 0.32 6.81 -82.83 -0.56 -0.24 16 8 C 0.59 8.98 7.84 -12.31 -0.10 8.88 16 9 O -0.53 -9.64 16.71 5.31 0.09 -9.55 16 10 N -0.59 -8.90 3.33 -171.61 -0.57 -9.47 16 11 C 0.10 1.25 5.95 -2.53 -0.02 1.24 16 12 C -0.14 -2.03 6.72 -24.58 -0.17 -2.20 16 13 C 0.17 3.11 3.60 -66.09 -0.24 2.87 16 14 H 0.07 1.23 8.09 -51.92 -0.42 0.81 16 15 N -0.71 -16.66 5.15 -51.64 -0.27 -16.93 16 16 C -0.25 -6.62 9.96 -15.06 -0.15 -6.77 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.93 -27.12 13.06 55.49 0.72 -26.39 16 20 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 C 0.08 1.43 6.63 -3.06 -0.02 1.41 16 25 C -0.03 -0.29 9.67 -39.00 -0.38 -0.66 16 26 C -0.20 -1.88 10.11 -39.12 -0.40 -2.27 16 27 C 0.48 5.53 7.47 -15.18 -0.11 5.41 16 28 O -0.53 -7.31 16.62 4.93 0.08 -7.23 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.83 7.36 -51.93 -0.38 0.45 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.99 5.90 -51.93 -0.31 0.69 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.13 8.01 -51.93 -0.42 0.72 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.39 9.69 7.76 -40.82 -0.32 9.37 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.08 1.57 8.03 -51.93 -0.42 1.15 16 46 H 0.16 1.44 7.72 -52.49 -0.41 1.04 16 47 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -32.18 389.95 -8.53 -40.71 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.28 Total: 5.91 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -2.19 Total: 5.72 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.08 Total: -58.12 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.17 Total: -16.78 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.18 -8.53 -40.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019760685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.082 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds