Wall clock time and date at job start Tue Mar 31 2020 18:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47294 * 179.97438 * 4 3 2 6 6 N 1.28384 * 119.10175 * 269.72820 * 5 4 3 7 7 C 1.31414 * 122.26665 * 179.74856 * 6 5 4 8 8 C 1.47882 * 119.89127 * 180.24551 * 7 6 5 9 9 O 1.21559 * 119.99981 * 180.26834 * 8 7 6 10 10 N 1.34775 * 120.00489 * 0.27629 * 8 7 6 11 11 C 1.47430 * 125.64522 * 0.02562 * 10 8 7 12 12 C 1.54907 * 104.83070 * 204.09533 * 11 10 8 13 13 C 1.55155 * 101.58437 * 322.99243 * 12 11 10 14 14 H 1.09007 * 110.71875 * 277.13983 * 13 12 11 15 15 N 1.46497 * 110.72425 * 153.86503 * 13 12 11 16 16 C 1.36935 * 120.00016 * 154.99560 * 15 13 12 17 17 H 1.08001 * 120.00488 * 0.02562 * 16 15 13 18 18 C 1.38816 * 119.99897 * 180.02562 * 16 15 13 19 19 N 1.31616 * 120.00072 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00039 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46688 * 60.00339 * 20 18 16 22 22 H 1.48496 * 109.46994 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47096 * 300.00243 * 20 18 16 24 24 C 1.47023 * 125.64997 * 179.71591 * 10 8 7 25 25 C 1.41568 * 120.21184 * 0.52179 * 7 6 5 26 26 C 1.36330 * 118.23955 * 359.74808 * 25 7 6 27 27 C 1.34606 * 119.10222 * 89.99630 * 5 4 3 28 28 O 1.21985 * 120.22872 * 359.95943 * 27 5 4 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 36 36 H 1.09001 * 109.47289 * 299.99953 * 4 3 2 37 37 H 1.09004 * 109.47261 * 59.99697 * 4 3 2 38 38 H 1.08997 * 110.36611 * 322.93216 * 11 10 8 39 39 H 1.08996 * 110.36690 * 85.25989 * 11 10 8 40 40 H 1.09003 * 111.00540 * 81.06397 * 12 11 10 41 41 H 1.08999 * 111.00884 * 204.88175 * 12 11 10 42 42 H 0.96996 * 119.99812 * 335.00038 * 15 13 12 43 43 H 0.97002 * 120.00358 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.88011 * 298.38743 * 24 10 8 45 45 H 1.08994 * 109.88158 * 59.55719 * 24 10 8 46 46 H 1.08001 * 120.88180 * 179.77121 * 25 7 6 47 47 H 1.08001 * 121.03273 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8237 0.0000 6 7 4.2720 3.4100 -1.1220 7 6 4.7051 4.6485 -1.1951 8 6 4.9284 5.2744 -2.5162 9 8 5.3337 6.4183 -2.5862 10 7 4.6824 4.5767 -3.6428 11 6 4.1899 3.1884 -3.7033 12 6 4.6540 2.6629 -5.0846 13 6 4.4815 3.9240 -5.9717 14 1 3.4481 4.0232 -6.3043 15 7 5.3942 3.8811 -7.1169 16 6 5.0902 4.5695 -8.2609 17 1 4.1778 5.1444 -8.3189 18 6 5.9547 4.5283 -9.3462 19 7 7.0664 3.8273 -9.2758 20 14 5.5404 5.4680 -10.9066 21 1 5.4229 6.9155 -10.5962 22 1 6.6165 5.2619 -11.9090 23 1 4.2522 4.9731 -11.4551 24 6 4.8545 5.0761 -5.0148 25 6 4.9643 5.3835 -0.0133 26 6 4.7473 4.7734 1.1864 27 6 4.2760 3.4417 1.1759 28 8 4.0674 2.8560 2.2254 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.9330 0.9289 0.8909 37 1 3.9337 0.9285 -0.8891 38 1 4.6315 2.5940 -2.9034 39 1 3.1022 3.1685 -3.6358 40 1 5.6969 2.3475 -5.0524 41 1 4.0131 1.8514 -5.4294 42 1 6.2138 3.3649 -7.0647 43 1 7.6708 3.7988 -10.0340 44 1 4.1971 5.9289 -5.1841 45 1 5.8924 5.3676 -5.1757 46 1 5.3240 6.4007 -0.0608 47 1 4.9297 5.2922 2.1159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019760685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:02 Heat of formation + Delta-G solvation = -7.953164 kcal Electronic energy + Delta-G solvation = -28887.408178 eV Core-core repulsion = 24878.328231 eV Total energy + Delta-G solvation = -4009.079947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.34397 -41.06905 -39.03917 -38.69350 -37.17230 -35.95132 -35.08836 -33.56918 -32.55082 -31.08998 -30.57449 -29.04752 -27.13832 -26.13474 -25.51285 -24.04850 -23.86962 -22.16772 -21.88480 -21.20247 -19.65460 -19.31125 -18.58719 -17.92843 -17.82213 -17.37474 -17.10296 -16.61163 -16.41851 -16.34331 -15.61771 -15.24379 -15.05533 -14.89647 -14.83385 -14.55544 -14.32952 -14.11983 -14.00574 -13.86012 -13.53420 -13.43059 -13.17779 -12.89913 -12.77478 -12.51343 -12.44604 -12.40390 -12.29603 -12.13612 -12.02747 -11.73430 -11.53604 -11.50163 -11.46830 -11.39373 -10.98347 -10.81684 -9.83995 -9.63127 -9.07223 -7.94570 -5.24390 -0.71328 -0.05708 0.93686 1.50177 1.52464 1.58118 1.61384 1.78760 2.35534 2.57155 2.71309 3.34151 3.42613 3.50494 3.67504 3.72106 3.78174 3.89479 3.96315 4.05519 4.05771 4.34223 4.39879 4.40790 4.43175 4.47849 4.52982 4.57967 4.65360 4.74078 4.80335 4.83630 4.88169 4.93650 4.97728 5.05103 5.07110 5.23876 5.24737 5.26000 5.33145 5.40971 5.45063 5.55044 6.26882 6.30134 6.41322 6.73007 6.94065 7.34205 8.06644 8.29426 9.28118 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.002675 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.483149 B =10463.147811 C =11857.790927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.127 4.127 4 C 0.101 3.899 5 N -0.331 5.331 6 N -0.164 5.164 7 C 0.017 3.983 8 C 0.591 3.409 9 O -0.568 6.568 10 N -0.593 5.593 11 C 0.110 3.890 12 C -0.132 4.132 13 C 0.165 3.835 14 H 0.076 0.924 15 N -0.724 5.724 16 C -0.246 4.246 17 H 0.080 0.920 18 C -0.071 4.071 19 N -0.967 5.967 20 Si 0.970 3.030 21 H -0.281 1.281 22 H -0.298 1.298 23 H -0.274 1.274 24 C 0.093 3.907 25 C -0.026 4.026 26 C -0.186 4.186 27 C 0.471 3.529 28 O -0.555 6.555 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.056 0.944 45 H 0.042 0.958 46 H 0.175 0.825 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.996 -7.101 22.143 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.165 4.165 4 C -0.018 4.018 5 N -0.152 5.152 6 N 0.005 4.995 7 C -0.153 4.153 8 C 0.377 3.623 9 O -0.446 6.446 10 N -0.324 5.324 11 C -0.012 4.012 12 C -0.171 4.171 13 C 0.055 3.945 14 H 0.094 0.906 15 N -0.363 5.363 16 C -0.378 4.378 17 H 0.098 0.902 18 C -0.263 4.263 19 N -0.617 5.617 20 Si 0.799 3.201 21 H -0.207 1.207 22 H -0.224 1.224 23 H -0.200 1.200 24 C -0.033 4.033 25 C -0.050 4.050 26 C -0.215 4.215 27 C 0.272 3.728 28 O -0.435 6.435 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.126 0.874 37 H 0.145 0.855 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.192 0.808 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.235 -7.451 22.111 25.897 hybrid contribution 0.756 1.277 -0.480 1.559 sum -10.480 -6.174 21.631 24.816 Atomic orbital electron populations 1.21768 0.95408 1.02281 1.01705 1.21415 0.96293 0.94285 1.03418 1.21897 0.92550 0.99519 1.02556 1.22485 0.96175 0.76193 1.06931 1.47236 1.49942 1.15809 1.02209 1.71397 1.06254 1.10069 1.11799 1.21467 1.07496 0.91095 0.95257 1.17209 0.78177 0.84678 0.82228 1.90809 1.48696 1.18523 1.86577 1.48431 1.62871 1.16069 1.05069 1.22769 1.00339 0.80065 0.98022 1.23080 1.02528 0.97730 0.93748 1.21429 0.94340 0.92598 0.86153 0.90583 1.42520 1.24271 1.58257 1.11225 1.19627 1.04123 1.22311 0.91698 0.90228 1.25534 0.97158 1.02009 1.01643 1.69795 1.13327 1.46624 1.31968 0.85273 0.76941 0.78471 0.79438 1.20748 1.22432 1.20030 1.22938 1.00340 0.99505 0.80550 1.22298 0.90984 1.02092 0.89582 1.22884 1.04045 0.93483 1.01123 1.18437 0.80811 0.89595 0.83990 1.90959 1.54411 1.67876 1.30275 0.91712 0.92610 0.93324 0.91247 0.89968 0.90823 0.92865 0.87376 0.85459 0.87375 0.89056 0.91548 0.87650 0.79143 0.93993 0.92603 0.93906 0.80751 0.79133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.05 5.93 30.60 0.18 -0.86 16 3 C -0.13 -1.53 5.54 30.60 0.17 -1.36 16 4 C 0.10 1.29 5.55 86.38 0.48 1.77 16 5 N -0.33 -5.99 3.22 -472.48 -1.52 -7.51 16 6 N -0.16 -3.16 7.18 -48.20 -0.35 -3.51 16 7 C 0.02 0.38 6.81 42.58 0.29 0.67 16 8 C 0.59 17.44 7.84 86.80 0.68 18.12 16 9 O -0.57 -20.58 16.71 -3.90 -0.07 -20.64 16 10 N -0.59 -17.21 3.33 -815.12 -2.71 -19.92 16 11 C 0.11 2.38 5.95 86.85 0.52 2.90 16 12 C -0.13 -3.45 6.72 31.98 0.21 -3.23 16 13 C 0.17 5.83 3.60 46.18 0.17 6.00 16 14 H 0.08 2.59 8.09 -2.38 -0.02 2.57 16 15 N -0.72 -34.13 5.15 -317.30 -1.64 -35.76 16 16 C -0.25 -12.99 9.96 84.03 0.84 -12.15 16 17 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 18 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 19 N -0.97 -57.56 13.06 21.65 0.28 -57.28 16 20 Si 0.97 44.93 29.55 68.60 2.03 46.95 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 C 0.09 3.30 6.63 86.73 0.58 3.88 16 25 C -0.03 -0.49 9.67 22.65 0.22 -0.27 16 26 C -0.19 -3.18 10.11 22.57 0.23 -2.95 16 27 C 0.47 9.96 7.47 85.01 0.63 10.60 16 28 O -0.55 -14.52 16.62 -5.27 -0.09 -14.61 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.11 1.44 7.36 -2.39 -0.02 1.42 16 37 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.11 2.01 5.90 -2.39 -0.01 1.99 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.89 8.01 -2.39 -0.02 1.87 16 41 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.38 19.18 7.76 -92.71 -0.72 18.46 16 43 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.04 1.81 8.03 -2.39 -0.02 1.79 16 46 H 0.18 2.81 7.72 -2.91 -0.02 2.79 16 47 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -70.42 389.95 2.58 -67.85 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.26 Total: 25.58 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 6.37 Total: 18.86 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -5.93 Total: -123.99 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.15 Total: -35.25 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -70.42 2.58 -67.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019760685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.893 kcal (2) G-P(sol) polarization free energy of solvation -70.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds