Wall clock time and date at job start Tue Mar 31 2020 18:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46958 * 2 1 4 4 C 1.53002 * 109.46960 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46875 * 179.97438 * 4 3 2 6 6 N 1.28391 * 119.10252 * 270.27876 * 5 4 3 7 7 C 1.31401 * 122.26913 * 180.29823 * 6 5 4 8 8 C 1.47878 * 119.89922 * 179.70028 * 7 6 5 9 9 O 1.21552 * 120.00570 * 179.72689 * 8 7 6 10 10 N 1.34781 * 119.99843 * 359.72483 * 8 7 6 11 11 C 1.46500 * 119.99985 * 179.97438 * 10 8 7 12 12 H 1.09002 * 112.85221 * 334.67013 * 11 10 8 13 13 C 1.53785 * 113.68813 * 105.94035 * 11 10 8 14 14 C 1.53777 * 87.08241 * 89.12417 * 13 11 10 15 15 H 1.08994 * 113.61814 * 270.88533 * 14 13 11 16 16 N 1.46496 * 113.68901 * 139.98818 * 14 13 11 17 17 C 1.36940 * 119.99729 * 107.46546 * 16 14 13 18 18 H 1.07998 * 120.00237 * 0.02562 * 17 16 14 19 19 C 1.38819 * 120.00039 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99726 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99918 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46726 * 60.00858 * 21 19 17 23 23 H 1.48498 * 109.46926 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47166 * 300.00661 * 21 19 17 25 25 C 1.53781 * 113.61339 * 203.47543 * 11 10 8 26 26 C 1.41589 * 120.20952 * 359.42580 * 7 6 5 27 27 C 1.36331 * 118.23623 * 0.27410 * 26 7 6 28 28 C 1.34606 * 119.09962 * 89.99965 * 5 4 3 29 29 O 1.21980 * 120.22377 * 359.97438 * 28 5 4 30 30 H 1.09003 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47161 * 299.99824 * 1 2 3 32 32 H 1.09000 * 109.47137 * 60.00257 * 1 2 3 33 33 H 1.09005 * 109.47398 * 239.99915 * 2 1 3 34 34 H 1.09000 * 109.47137 * 119.99743 * 2 1 3 35 35 H 1.09000 * 109.46720 * 59.99931 * 3 2 1 36 36 H 1.09000 * 109.46987 * 299.99835 * 3 2 1 37 37 H 1.09000 * 109.47206 * 60.00540 * 4 3 2 38 38 H 1.09000 * 109.47390 * 299.99900 * 4 3 2 39 39 H 0.96998 * 119.99866 * 0.02562 * 10 8 7 40 40 H 1.08999 * 113.61060 * 203.67840 * 13 11 10 41 41 H 1.08997 * 113.61198 * 334.57634 * 13 11 10 42 42 H 0.97001 * 120.00876 * 287.46582 * 16 14 13 43 43 H 0.96998 * 119.99528 * 179.97438 * 20 19 17 44 44 H 1.09000 * 113.61578 * 25.34726 * 25 11 10 45 45 H 1.09001 * 113.61682 * 156.17306 * 25 11 10 46 46 H 1.07996 * 120.88230 * 180.25112 * 26 7 6 47 47 H 1.07996 * 121.03240 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 7 4.2617 3.4137 -1.1220 7 6 4.7041 4.6489 -1.1952 8 6 4.9263 5.2752 -2.5162 9 8 5.3308 6.4193 -2.5862 10 7 4.6804 4.5774 -3.6428 11 6 4.9000 5.1981 -4.9515 12 1 4.8281 6.2853 -4.9218 13 6 6.1545 4.6832 -5.6768 14 6 5.2586 3.5917 -6.2856 15 1 5.1943 2.6898 -5.6769 16 7 5.5498 3.3084 -7.6931 17 6 6.1764 2.1417 -8.0413 18 1 6.4556 1.4301 -7.2783 19 6 6.4519 1.8730 -9.3751 20 7 6.1113 2.7400 -10.3050 21 14 7.3073 0.2817 -9.8499 22 1 6.4815 -0.8731 -9.4146 23 1 7.4852 0.2360 -11.3235 24 1 8.6356 0.2174 -9.1891 25 6 4.0789 4.5572 -6.0828 26 6 4.9633 5.3840 -0.0132 27 6 4.7468 4.7736 1.1865 28 6 4.2759 3.4417 1.1759 29 8 4.0676 2.8558 2.2253 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9337 0.9287 -0.8891 38 1 3.9330 0.9289 0.8909 39 1 4.3573 3.6645 -3.5871 40 1 6.5515 5.3828 -6.4124 41 1 6.9194 4.2954 -5.0041 42 1 5.2989 3.9473 -8.3785 43 1 6.3042 2.5524 -11.2369 44 1 3.1682 4.0674 -5.7379 45 1 3.9072 5.2227 -6.9289 46 1 5.3232 6.4011 -0.0607 47 1 4.9291 5.2923 2.1160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021035173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:43 Heat of formation + Delta-G solvation = 18.503094 kcal Electronic energy + Delta-G solvation = -28208.290498 eV Core-core repulsion = 24200.357780 eV Total energy + Delta-G solvation = -4007.932718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.53933 -40.09219 -38.36110 -37.82987 -36.55945 -34.46779 -34.16015 -32.88555 -31.66562 -30.09022 -29.64794 -26.39878 -25.28427 -25.17358 -24.48802 -23.38643 -22.41884 -21.67253 -21.49242 -19.11208 -19.02114 -18.25515 -17.18713 -17.00727 -16.93186 -16.37952 -15.91948 -15.81969 -15.14301 -14.88295 -14.71683 -14.26832 -14.20471 -13.91772 -13.79757 -13.61491 -13.42188 -13.35589 -12.98048 -12.69502 -12.21745 -12.05653 -11.93327 -11.89712 -11.79221 -11.67339 -11.55810 -11.04105 -10.92112 -10.83183 -10.79321 -10.42439 -10.37363 -10.24848 -10.09576 -9.94818 -9.60820 -9.06334 -8.93034 -8.82268 -7.01507 -5.82576 -3.11718 0.04478 0.78371 1.67401 2.52325 2.89107 3.22078 3.40380 3.45198 3.46061 3.55730 4.21301 4.30383 4.37700 4.41291 4.49847 4.55222 4.58790 4.81750 4.96188 4.98027 5.07022 5.15306 5.16259 5.24885 5.29766 5.39755 5.40301 5.45244 5.47494 5.50622 5.62938 5.70510 5.78184 5.82833 5.86041 5.88830 6.06379 6.21773 6.27720 6.41625 6.58264 6.63534 7.01251 7.10854 7.37866 7.60752 7.64395 8.02917 8.35863 9.47131 10.04155 10.38444 11.39633 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010376 B = 0.002653 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.842905 B =10550.804674 C =12253.842002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.134 4.134 4 C 0.106 3.894 5 N -0.333 5.333 6 N -0.178 5.178 7 C 0.020 3.980 8 C 0.588 3.412 9 O -0.529 6.529 10 N -0.685 5.685 11 C 0.113 3.887 12 H 0.099 0.901 13 C -0.175 4.175 14 C 0.166 3.834 15 H 0.074 0.926 16 N -0.711 5.711 17 C -0.246 4.246 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.158 4.158 26 C -0.029 4.029 27 C -0.194 4.194 28 C 0.480 3.520 29 O -0.526 6.526 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.409 0.591 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.386 0.614 43 H 0.257 0.743 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.164 0.836 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 1.071 22.986 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.173 4.173 4 C -0.013 4.013 5 N -0.155 5.155 6 N -0.008 5.008 7 C -0.152 4.152 8 C 0.371 3.629 9 O -0.403 6.403 10 N -0.335 5.335 11 C 0.008 3.992 12 H 0.117 0.883 13 C -0.218 4.218 14 C 0.054 3.946 15 H 0.092 0.908 16 N -0.349 5.349 17 C -0.378 4.378 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.198 4.198 26 C -0.053 4.053 27 C -0.224 4.224 28 C 0.279 3.721 29 O -0.403 6.403 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.245 0.755 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.220 0.780 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.112 0.888 46 H 0.182 0.818 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.523 0.620 22.961 24.500 hybrid contribution 0.535 -0.461 0.078 0.711 sum -7.987 0.159 23.039 24.385 Atomic orbital electron populations 1.21750 0.95239 1.01973 1.02024 1.21428 0.96501 0.95178 1.02712 1.21971 0.93046 0.98813 1.03441 1.22238 0.95826 0.77302 1.05959 1.46923 1.51110 1.14951 1.02492 1.71058 1.06341 1.10577 1.12828 1.21836 1.06374 0.90526 0.96414 1.17160 0.78216 0.85357 0.82175 1.90825 1.46243 1.16952 1.86279 1.45576 1.65484 1.17493 1.04972 1.21928 0.98931 0.97846 0.80459 0.88278 1.24321 0.96660 1.01447 0.99326 1.21627 0.91614 0.93650 0.87709 0.90797 1.42387 1.69439 1.22065 1.01036 1.19244 1.30586 0.96182 0.91756 0.91166 1.24767 1.01668 0.98502 0.95817 1.69647 1.52343 1.35811 1.00146 0.86269 0.79484 0.83177 0.77261 1.21214 1.21658 1.21216 1.23868 0.98672 1.00124 0.97160 1.22259 0.91056 1.01666 0.90277 1.22694 1.04981 0.94232 1.00468 1.18124 0.80966 0.89004 0.84008 1.90974 1.52899 1.67107 1.29351 0.92362 0.92732 0.92477 0.91181 0.91498 0.91145 0.90746 0.87526 0.87302 0.75550 0.89353 0.92305 0.77981 0.93348 0.91629 0.88805 0.81798 0.81378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.71 5.93 -26.73 -0.16 -0.87 16 3 C -0.13 -0.95 5.54 -26.73 -0.15 -1.10 16 4 C 0.11 0.81 5.55 -4.04 -0.02 0.79 16 5 N -0.33 -3.25 3.22 -63.33 -0.20 -3.45 16 6 N -0.18 -1.78 10.10 33.42 0.34 -1.44 16 7 C 0.02 0.21 6.84 -82.83 -0.57 -0.35 16 8 C 0.59 7.39 7.81 -12.31 -0.10 7.30 16 9 O -0.53 -8.01 16.00 5.32 0.09 -7.92 16 10 N -0.69 -8.37 5.26 -53.94 -0.28 -8.66 16 11 C 0.11 1.58 4.30 -67.12 -0.29 1.29 16 12 H 0.10 1.41 7.50 -51.93 -0.39 1.02 16 13 C -0.18 -2.91 7.68 -25.92 -0.20 -3.11 16 14 C 0.17 3.04 4.37 -67.12 -0.29 2.75 16 15 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 16 N -0.71 -17.03 5.40 -52.64 -0.28 -17.31 16 17 C -0.25 -6.62 9.97 -15.06 -0.15 -6.77 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 21 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 C -0.16 -2.34 7.57 -25.91 -0.20 -2.54 16 26 C -0.03 -0.26 9.68 -38.99 -0.38 -0.63 16 27 C -0.19 -1.70 10.11 -39.12 -0.40 -2.09 16 28 C 0.48 5.25 7.47 -15.18 -0.11 5.13 16 29 O -0.53 -7.02 16.62 4.94 0.08 -6.94 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.11 0.83 7.36 -51.93 -0.38 0.45 16 39 H 0.41 4.44 8.04 -40.82 -0.33 4.12 16 40 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.39 9.82 7.93 -40.82 -0.32 9.50 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.09 1.42 8.12 -51.93 -0.42 1.00 16 46 H 0.16 1.20 7.72 -52.49 -0.41 0.80 16 47 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 397.28 15.07 5.99 5.99 Total: -1.00 -32.45 397.28 -8.60 -41.05 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -7.29 Total: 9.80 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -2.73 Total: -1.16 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.29 Total: -57.63 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.17 Total: -14.87 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.45 -8.60 -41.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021035173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.552 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds