Wall clock time and date at job start Tue Mar 31 2020 18:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46958 * 2 1 4 4 C 1.53002 * 109.46960 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46875 * 179.97438 * 4 3 2 6 6 N 1.28391 * 119.10252 * 270.27876 * 5 4 3 7 7 C 1.31401 * 122.26913 * 180.29823 * 6 5 4 8 8 C 1.47878 * 119.89922 * 179.70028 * 7 6 5 9 9 O 1.21552 * 120.00570 * 179.72689 * 8 7 6 10 10 N 1.34781 * 119.99843 * 359.72483 * 8 7 6 11 11 C 1.46500 * 119.99985 * 179.97438 * 10 8 7 12 12 H 1.09002 * 112.85221 * 334.67013 * 11 10 8 13 13 C 1.53785 * 113.68813 * 105.94035 * 11 10 8 14 14 C 1.53777 * 87.08241 * 89.12417 * 13 11 10 15 15 H 1.08994 * 113.61814 * 270.88533 * 14 13 11 16 16 N 1.46496 * 113.68901 * 139.98818 * 14 13 11 17 17 C 1.36940 * 119.99729 * 107.46546 * 16 14 13 18 18 H 1.07998 * 120.00237 * 0.02562 * 17 16 14 19 19 C 1.38819 * 120.00039 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99726 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99918 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46726 * 60.00858 * 21 19 17 23 23 H 1.48498 * 109.46926 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47166 * 300.00661 * 21 19 17 25 25 C 1.53781 * 113.61339 * 203.47543 * 11 10 8 26 26 C 1.41589 * 120.20952 * 359.42580 * 7 6 5 27 27 C 1.36331 * 118.23623 * 0.27410 * 26 7 6 28 28 C 1.34606 * 119.09962 * 89.99965 * 5 4 3 29 29 O 1.21980 * 120.22377 * 359.97438 * 28 5 4 30 30 H 1.09003 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47161 * 299.99824 * 1 2 3 32 32 H 1.09000 * 109.47137 * 60.00257 * 1 2 3 33 33 H 1.09005 * 109.47398 * 239.99915 * 2 1 3 34 34 H 1.09000 * 109.47137 * 119.99743 * 2 1 3 35 35 H 1.09000 * 109.46720 * 59.99931 * 3 2 1 36 36 H 1.09000 * 109.46987 * 299.99835 * 3 2 1 37 37 H 1.09000 * 109.47206 * 60.00540 * 4 3 2 38 38 H 1.09000 * 109.47390 * 299.99900 * 4 3 2 39 39 H 0.96998 * 119.99866 * 0.02562 * 10 8 7 40 40 H 1.08999 * 113.61060 * 203.67840 * 13 11 10 41 41 H 1.08997 * 113.61198 * 334.57634 * 13 11 10 42 42 H 0.97001 * 120.00876 * 287.46582 * 16 14 13 43 43 H 0.96998 * 119.99528 * 179.97438 * 20 19 17 44 44 H 1.09000 * 113.61578 * 25.34726 * 25 11 10 45 45 H 1.09001 * 113.61682 * 156.17306 * 25 11 10 46 46 H 1.07996 * 120.88230 * 180.25112 * 26 7 6 47 47 H 1.07996 * 121.03240 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 7 4.2617 3.4137 -1.1220 7 6 4.7041 4.6489 -1.1952 8 6 4.9263 5.2752 -2.5162 9 8 5.3308 6.4193 -2.5862 10 7 4.6804 4.5774 -3.6428 11 6 4.9000 5.1981 -4.9515 12 1 4.8281 6.2853 -4.9218 13 6 6.1545 4.6832 -5.6768 14 6 5.2586 3.5917 -6.2856 15 1 5.1943 2.6898 -5.6769 16 7 5.5498 3.3084 -7.6931 17 6 6.1764 2.1417 -8.0413 18 1 6.4556 1.4301 -7.2783 19 6 6.4519 1.8730 -9.3751 20 7 6.1113 2.7400 -10.3050 21 14 7.3073 0.2817 -9.8499 22 1 6.4815 -0.8731 -9.4146 23 1 7.4852 0.2360 -11.3235 24 1 8.6356 0.2174 -9.1891 25 6 4.0789 4.5572 -6.0828 26 6 4.9633 5.3840 -0.0132 27 6 4.7468 4.7736 1.1865 28 6 4.2759 3.4417 1.1759 29 8 4.0676 2.8558 2.2253 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6765 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9337 0.9287 -0.8891 38 1 3.9330 0.9289 0.8909 39 1 4.3573 3.6645 -3.5871 40 1 6.5515 5.3828 -6.4124 41 1 6.9194 4.2954 -5.0041 42 1 5.2989 3.9473 -8.3785 43 1 6.3042 2.5524 -11.2369 44 1 3.1682 4.0674 -5.7379 45 1 3.9072 5.2227 -6.9289 46 1 5.3232 6.4011 -0.0607 47 1 4.9291 5.2923 2.1160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021035173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:41 Heat of formation + Delta-G solvation = -2.860057 kcal Electronic energy + Delta-G solvation = -28209.216873 eV Core-core repulsion = 24200.357780 eV Total energy + Delta-G solvation = -4008.859093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.33482 -41.20535 -39.50935 -38.82578 -37.20636 -35.79183 -35.10125 -34.28616 -32.62916 -31.67337 -30.48360 -27.24476 -26.52939 -26.37343 -25.81297 -24.26288 -23.70741 -22.61236 -22.16215 -20.39140 -19.98238 -19.24423 -18.89176 -17.91854 -17.72371 -17.32335 -16.99110 -16.62055 -16.38936 -16.10495 -15.85949 -15.52504 -15.34771 -14.87095 -14.85532 -14.51511 -14.20097 -14.19623 -14.12507 -13.62752 -13.46815 -13.41602 -13.27054 -12.85107 -12.76767 -12.58410 -12.53682 -12.36196 -12.19713 -12.06808 -11.82837 -11.71967 -11.55331 -11.47646 -11.39158 -11.17963 -10.96686 -10.80741 -10.12572 -9.74232 -8.95653 -7.92395 -5.20290 -0.70642 -0.05471 0.92139 1.49661 1.51841 1.57828 1.61223 1.90657 2.36897 2.58741 2.74437 3.39228 3.50549 3.55556 3.68872 3.73040 3.75032 3.85927 3.87438 4.00549 4.02124 4.30332 4.36236 4.36945 4.39645 4.47552 4.50895 4.61833 4.71632 4.75283 4.83010 4.88125 4.90549 4.95121 4.96623 5.01134 5.16705 5.20587 5.23345 5.26091 5.28691 5.40759 5.52889 5.69488 6.27043 6.29944 6.40935 6.78218 7.02931 7.36388 8.13840 8.35706 9.30666 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010376 B = 0.002653 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.842905 B =10550.804674 C =12253.842002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.126 4.126 4 C 0.100 3.900 5 N -0.330 5.330 6 N -0.174 5.174 7 C 0.014 3.986 8 C 0.593 3.407 9 O -0.554 6.554 10 N -0.680 5.680 11 C 0.134 3.866 12 H 0.102 0.898 13 C -0.172 4.172 14 C 0.150 3.850 15 H 0.081 0.919 16 N -0.727 5.727 17 C -0.243 4.243 18 H 0.078 0.922 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.969 3.031 22 H -0.276 1.276 23 H -0.298 1.298 24 H -0.280 1.280 25 C -0.142 4.142 26 C -0.024 4.024 27 C -0.189 4.189 28 C 0.470 3.530 29 O -0.556 6.556 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.417 0.583 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.181 0.819 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.824 0.564 24.456 26.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.165 4.165 4 C -0.018 4.018 5 N -0.151 5.151 6 N -0.006 5.006 7 C -0.157 4.157 8 C 0.377 3.623 9 O -0.430 6.430 10 N -0.331 5.331 11 C 0.029 3.971 12 H 0.120 0.880 13 C -0.214 4.214 14 C 0.041 3.959 15 H 0.099 0.901 16 N -0.364 5.364 17 C -0.375 4.375 18 H 0.095 0.905 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.799 3.201 22 H -0.202 1.202 23 H -0.225 1.225 24 H -0.207 1.207 25 C -0.182 4.182 26 C -0.047 4.047 27 C -0.218 4.218 28 C 0.271 3.729 29 O -0.436 6.436 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.254 0.746 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.198 0.802 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -8.841 0.099 24.487 26.034 hybrid contribution 0.610 -0.295 -0.290 0.737 sum -8.231 -0.196 24.197 25.559 Atomic orbital electron populations 1.21764 0.95266 1.02323 1.01766 1.21423 0.96440 0.94382 1.03302 1.21892 0.92576 0.99455 1.02549 1.22448 0.96172 0.76452 1.06742 1.47083 1.50351 1.15486 1.02201 1.71043 1.06210 1.10482 1.12815 1.21641 1.07104 0.90975 0.95949 1.17322 0.77363 0.84956 0.82678 1.90818 1.47324 1.18088 1.86738 1.45483 1.65401 1.17868 1.04325 1.21614 0.96627 0.97981 0.80919 0.87961 1.24158 0.97419 1.00555 0.99230 1.21990 0.93980 0.94904 0.85071 0.90146 1.42579 1.69622 1.21130 1.03068 1.19663 1.29104 0.96861 0.91894 0.90451 1.25537 1.03473 1.01671 0.96085 1.69801 1.54487 1.37723 1.00004 0.85270 0.78640 0.79942 0.76275 1.20171 1.22479 1.20659 1.23684 0.98260 0.98889 0.97334 1.22367 0.90678 1.02215 0.89476 1.22888 1.04192 0.93266 1.01449 1.18505 0.80830 0.89738 0.83849 1.90961 1.54473 1.67921 1.30287 0.91721 0.93059 0.92694 0.90362 0.91126 0.92601 0.90977 0.85914 0.87337 0.74573 0.90711 0.92550 0.79312 0.94082 0.89570 0.89051 0.80169 0.79129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.94 16 2 C -0.12 -1.22 5.93 30.59 0.18 -1.04 16 3 C -0.13 -1.65 5.54 30.60 0.17 -1.48 16 4 C 0.10 1.40 5.55 86.38 0.48 1.88 16 5 N -0.33 -5.94 3.22 -472.47 -1.52 -7.46 16 6 N -0.17 -3.15 10.10 -48.19 -0.49 -3.64 16 7 C 0.01 0.27 6.84 42.59 0.29 0.56 16 8 C 0.59 13.71 7.81 86.80 0.68 14.38 16 9 O -0.55 -15.77 16.00 -3.88 -0.06 -15.83 16 10 N -0.68 -15.12 5.26 -442.86 -2.33 -17.45 16 11 C 0.13 3.50 4.30 45.52 0.20 3.69 16 12 H 0.10 2.72 7.50 -2.39 -0.02 2.70 16 13 C -0.17 -5.54 7.68 31.12 0.24 -5.30 16 14 C 0.15 5.32 4.37 45.52 0.20 5.52 16 15 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 16 N -0.73 -34.70 5.40 -320.44 -1.73 -36.43 16 17 C -0.24 -12.99 9.97 84.03 0.84 -12.15 16 18 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 19 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16 20 N -0.97 -58.14 13.06 21.65 0.28 -57.86 16 21 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 C -0.14 -3.94 7.57 31.12 0.24 -3.70 16 26 C -0.02 -0.37 9.68 22.65 0.22 -0.15 16 27 C -0.19 -2.91 10.11 22.57 0.23 -2.69 16 28 C 0.47 9.66 7.47 85.01 0.63 10.30 16 29 O -0.56 -14.46 16.62 -5.25 -0.09 -14.54 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.12 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.11 1.55 7.36 -2.39 -0.02 1.53 16 39 H 0.42 8.01 8.04 -92.71 -0.75 7.27 16 40 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.37 19.32 7.93 -92.71 -0.73 18.59 16 43 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 44 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.09 2.64 8.12 -2.39 -0.02 2.62 16 46 H 0.18 2.19 7.72 -2.91 -0.02 2.16 16 47 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -69.23 397.28 1.38 -67.85 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.49 Total: 33.22 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.77 Total: 5.12 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -5.78 Total: -122.83 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.15 Total: -30.37 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -69.23 1.38 -67.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021035173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.992 kcal (2) G-P(sol) polarization free energy of solvation -69.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds