Wall clock time and date at job start Tue Mar 31 2020 17:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47373 * 2 1 4 4 C 1.50707 * 109.47260 * 119.99805 * 2 1 3 5 5 N 1.29950 * 126.28382 * 300.02721 * 4 2 1 6 6 O 1.21299 * 110.24868 * 179.97438 * 5 4 2 7 7 C 1.33647 * 109.80988 * 0.02562 * 6 5 4 8 8 C 1.50703 * 126.54640 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46948 * 270.01845 * 8 7 6 10 10 C 1.50698 * 109.47000 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00479 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00160 * 180.02562 * 10 9 8 13 13 C 1.47871 * 126.94134 * 0.02562 * 12 10 9 14 14 C 1.56017 * 105.19197 * 181.93000 * 13 12 10 15 15 H 1.09005 * 116.24768 * 158.88693 * 14 13 12 16 16 C 1.57354 * 99.49054 * 32.81616 * 14 13 12 17 17 C 1.49290 * 126.95095 * 180.02562 * 12 10 9 18 18 H 1.09003 * 116.14531 * 16.72183 * 17 12 10 19 19 C 1.56017 * 104.09049 * 247.58168 * 17 12 10 20 20 N 1.49287 * 104.09581 * 288.81918 * 14 13 12 21 21 C 1.36940 * 126.94714 * 246.69311 * 20 14 13 22 22 H 1.07996 * 119.99717 * 353.71814 * 21 20 14 23 23 C 1.38815 * 120.00036 * 173.71136 * 21 20 14 24 24 N 1.31623 * 119.99511 * 6.45066 * 23 21 20 25 25 Si 1.86793 * 119.99957 * 186.44838 * 23 21 20 26 26 H 1.48497 * 109.47347 * 94.98798 * 25 23 21 27 27 H 1.48498 * 109.47095 * 214.98602 * 25 23 21 28 28 H 1.48495 * 109.47232 * 334.98452 * 25 23 21 29 29 N 1.31127 * 106.89770 * 0.22041 * 7 6 5 30 30 H 1.09001 * 109.47463 * 300.00145 * 1 2 3 31 31 H 1.09003 * 109.47202 * 60.00067 * 1 2 3 32 32 H 1.09003 * 109.47047 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47463 * 239.99855 * 2 1 3 34 34 H 1.09001 * 109.46944 * 59.99537 * 3 2 1 35 35 H 1.08999 * 109.47246 * 179.97438 * 3 2 1 36 36 H 1.09003 * 109.46901 * 300.00117 * 3 2 1 37 37 H 1.09005 * 109.47063 * 150.02104 * 8 7 6 38 38 H 1.08997 * 109.47324 * 30.02226 * 8 7 6 39 39 H 1.08997 * 109.47218 * 60.00475 * 9 8 7 40 40 H 1.08997 * 109.47419 * 300.00323 * 9 8 7 41 41 H 1.08996 * 110.32323 * 300.89095 * 13 12 10 42 42 H 1.09005 * 110.31610 * 62.97869 * 13 12 10 43 43 H 1.08998 * 112.35696 * 191.71711 * 16 14 13 44 44 H 1.09003 * 112.44813 * 64.30597 * 16 14 13 45 45 H 1.08993 * 110.31939 * 47.67044 * 19 17 12 46 46 H 1.09000 * 110.31244 * 169.85761 * 19 17 12 47 47 H 0.96999 * 119.99037 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7945 -0.3748 2.4632 6 8 2.3408 -1.1479 3.2217 7 6 2.9994 -2.0780 2.5236 8 6 3.8068 -3.2189 3.0873 9 6 5.2573 -2.7714 3.2789 10 6 6.0647 -3.9124 3.8420 11 8 5.5326 -4.9787 4.0674 12 7 7.3782 -3.7480 4.0952 13 6 8.1780 -2.5229 3.8809 14 6 9.6331 -2.9074 4.2923 15 1 10.4295 -2.2835 3.8866 16 6 9.6335 -4.4205 3.8604 17 6 8.3197 -4.7658 4.6487 18 1 7.9855 -5.8025 4.6065 19 6 8.6859 -4.2157 6.0619 20 7 9.5691 -3.0348 5.7784 21 6 10.1857 -2.2320 6.7006 22 1 10.8757 -1.4674 6.3755 23 6 9.9239 -2.4009 8.0533 24 7 9.1840 -3.4110 8.4592 25 14 10.6216 -1.1948 9.2974 26 1 9.6099 -0.1492 9.5944 27 1 10.9677 -1.9178 10.5475 28 1 11.8419 -0.5587 8.7396 29 7 2.8133 -1.8050 1.2546 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 3.7749 -4.0623 2.3974 38 1 3.3892 -3.5195 4.0482 39 1 5.2892 -1.9281 3.9688 40 1 5.6748 -2.4707 2.3180 41 1 8.1466 -2.2289 2.8318 42 1 7.8078 -1.7142 4.5111 43 1 10.5002 -4.9602 4.2418 44 1 9.5163 -4.5461 2.7840 45 1 7.7848 -3.9148 6.5961 46 1 9.2309 -4.9685 6.6315 47 1 9.0014 -3.5292 9.4045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032552046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:45 Heat of formation + Delta-G solvation = 78.582924 kcal Electronic energy + Delta-G solvation = -28740.367199 eV Core-core repulsion = 24735.039738 eV Total energy + Delta-G solvation = -4005.327461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.73948 -40.10218 -38.08672 -37.11985 -35.37019 -33.65380 -33.54372 -31.71419 -30.83968 -29.10750 -28.54434 -27.61841 -25.89467 -25.18751 -24.80830 -23.53751 -22.86465 -20.62836 -20.12590 -19.89380 -18.53908 -18.14330 -17.75211 -17.24993 -16.41061 -15.86943 -15.62153 -15.36037 -15.02506 -14.65322 -14.30550 -14.05207 -13.82486 -13.59589 -13.44696 -13.08425 -12.66225 -12.60064 -12.54402 -12.18954 -12.02869 -11.95729 -11.91310 -11.66705 -11.50605 -11.38911 -11.37655 -11.32024 -11.08558 -11.06154 -10.91587 -10.81192 -10.63065 -10.31715 -10.09681 -10.07970 -9.66711 -9.52167 -8.74287 -8.08262 -6.96992 -5.81801 -3.15079 0.97293 2.03794 2.61573 2.93337 3.26108 3.35162 3.40283 3.42817 3.43121 3.84194 4.38308 4.45696 4.61361 4.63124 4.67205 4.76619 4.89290 4.99534 5.13104 5.14971 5.19511 5.28670 5.34986 5.37947 5.39210 5.45982 5.52187 5.57873 5.58570 5.62520 5.72239 5.76773 5.78164 5.80809 5.88000 5.92116 6.12651 6.22955 6.35985 6.42903 6.54566 6.62879 7.34334 7.44956 7.66513 7.99749 8.01364 8.03468 8.46742 9.02982 9.66724 10.35692 11.31183 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.002473 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.139111 B =11321.299838 C =12046.046136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.004 4.004 3 C -0.145 4.145 4 C 0.173 3.827 5 N -0.382 5.382 6 O 0.078 5.922 7 C 0.191 3.809 8 C -0.012 4.012 9 C -0.133 4.133 10 C 0.532 3.468 11 O -0.556 6.556 12 N -0.604 5.604 13 C 0.081 3.919 14 C 0.143 3.857 15 H 0.107 0.893 16 C -0.152 4.152 17 C 0.098 3.902 18 H 0.113 0.887 19 C 0.175 3.825 20 N -0.600 5.600 21 C -0.233 4.233 22 H 0.080 0.920 23 C -0.005 4.005 24 N -0.917 5.917 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 N -0.482 5.482 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.367 4.306 -17.094 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 C -0.204 4.204 4 C -0.101 4.101 5 N -0.090 5.090 6 O 0.020 5.980 7 C -0.029 4.029 8 C -0.051 4.051 9 C -0.174 4.174 10 C 0.320 3.680 11 O -0.435 6.435 12 N -0.337 5.337 13 C -0.044 4.044 14 C 0.034 3.966 15 H 0.124 0.876 16 C -0.191 4.191 17 C -0.005 4.005 18 H 0.131 0.869 19 C 0.051 3.949 20 N -0.325 5.325 21 C -0.361 4.361 22 H 0.098 0.902 23 C -0.202 4.202 24 N -0.564 5.564 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 N -0.216 5.216 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.159 4.418 -16.900 21.283 hybrid contribution 0.372 0.646 0.922 1.185 sum -11.787 5.064 -15.978 20.491 Atomic orbital electron populations 1.21849 0.92916 1.02567 1.02972 1.19555 0.96374 0.95423 0.91013 1.21854 1.01595 0.93936 1.02973 1.25839 0.96658 0.92929 0.94627 1.74587 1.17684 1.13897 1.02823 1.85328 1.47695 1.29701 1.35272 1.28877 0.94364 0.93826 0.85881 1.19995 0.91223 0.90047 1.03849 1.21566 0.93207 0.98944 1.03690 1.19758 0.81046 0.88783 0.78370 1.90685 1.69908 1.28252 1.54688 1.49191 1.07326 1.15059 1.62107 1.23343 0.95057 0.87160 0.98866 1.23175 0.92755 0.94061 0.86614 0.87551 1.24201 0.97544 0.98965 0.98409 1.24358 0.86707 0.92681 0.96736 0.86912 1.22324 0.94514 0.88943 0.89145 1.45784 1.56043 1.32297 0.98363 1.19056 1.19779 1.10994 0.86243 0.90178 1.24830 0.99978 0.98374 0.96989 1.69914 1.42309 1.29566 1.14578 0.86127 0.78273 0.80417 0.81092 1.21627 1.21758 1.20592 1.71925 1.17283 1.14265 1.18119 0.91839 0.91059 0.92296 0.88062 0.91828 0.92184 0.91054 0.86350 0.86978 0.88218 0.88372 0.92787 0.90961 0.89782 0.91607 0.92869 0.92722 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.18 37.16 0.34 -0.71 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.15 -1.09 9.18 37.16 0.34 -0.75 16 4 C 0.17 2.06 6.72 -156.37 -1.05 1.01 16 5 N -0.38 -5.02 12.16 30.90 0.38 -4.64 16 6 O 0.08 1.01 11.31 18.09 0.20 1.22 16 7 C 0.19 2.28 7.77 -13.06 -0.10 2.18 16 8 C -0.01 -0.13 5.13 -27.88 -0.14 -0.27 16 9 C -0.13 -1.60 4.97 -27.88 -0.14 -1.74 16 10 C 0.53 8.64 7.89 -10.99 -0.09 8.55 16 11 O -0.56 -10.51 16.33 5.56 0.09 -10.42 16 12 N -0.60 -10.30 2.94 -156.80 -0.46 -10.76 16 13 C 0.08 1.29 6.00 -1.68 -0.01 1.28 16 14 C 0.14 2.51 5.54 -62.40 -0.35 2.17 16 15 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 16 C -0.15 -2.42 6.83 -22.16 -0.15 -2.58 16 17 C 0.10 1.78 5.18 -62.57 -0.32 1.46 16 18 H 0.11 2.01 8.06 -51.93 -0.42 1.59 16 19 C 0.18 4.03 4.88 -0.38 0.00 4.03 16 20 N -0.60 -13.91 3.07 -154.29 -0.47 -14.38 16 21 C -0.23 -6.04 10.37 -15.06 -0.16 -6.19 16 22 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 23 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 24 N -0.92 -26.19 10.62 55.49 0.59 -25.60 16 25 Si 0.91 21.37 29.56 -169.99 -5.02 16.35 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 N -0.48 -6.11 11.55 -9.87 -0.11 -6.23 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.12 1.27 8.10 -51.93 -0.42 0.85 16 38 H 0.11 1.19 8.10 -51.93 -0.42 0.77 16 39 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.05 1.41 7.59 -51.93 -0.39 1.02 16 46 H 0.05 1.39 7.65 -51.93 -0.40 0.99 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -31.72 386.99 -8.73 -40.45 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.52 Total: 0.33 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -2.24 Total: 7.87 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.08 Total: -61.62 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.30 Total: -9.21 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.72 -8.73 -40.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032552046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.036 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds