Wall clock time and date at job start Tue Mar 31 2020 19:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47608 * 2 1 4 4 H 1.08998 * 109.49963 * 305.00143 * 3 2 1 5 5 C 1.53197 * 109.49885 * 65.06788 * 3 2 1 6 6 N 1.46917 * 108.78159 * 174.58566 * 5 3 2 7 7 C 1.34768 * 120.63465 * 126.40908 * 6 5 3 8 8 O 1.21482 * 120.00072 * 352.55152 * 7 6 5 9 9 C 1.48453 * 120.00366 * 172.54990 * 7 6 5 10 10 C 1.39184 * 120.51827 * 171.10734 * 9 7 6 11 11 C 1.39600 * 118.20573 * 180.02562 * 10 9 7 12 12 O 1.35512 * 120.49180 * 179.97438 * 11 10 9 13 13 C 1.42902 * 117.00062 * 180.02562 * 12 11 10 14 14 N 1.32665 * 119.01658 * 0.02562 * 11 10 9 15 15 C 1.31858 * 120.94113 * 359.97438 * 14 11 10 16 16 N 1.31564 * 121.98786 * 359.72121 * 15 14 11 17 17 C 1.46933 * 118.73563 * 306.39392 * 6 5 3 18 18 C 1.53191 * 108.77770 * 53.60589 * 17 6 5 19 19 C 1.53039 * 109.33736 * 305.37976 * 18 17 6 20 20 H 1.08994 * 109.43468 * 301.31419 * 19 18 17 21 21 N 1.46495 * 109.48434 * 181.35424 * 19 18 17 22 22 C 1.36943 * 120.00204 * 84.91647 * 21 19 18 23 23 H 1.07994 * 119.99565 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00053 * 179.97438 * 22 21 19 25 25 N 1.31623 * 120.00157 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99777 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46916 * 90.00601 * 26 24 22 28 28 H 1.48498 * 109.47396 * 209.99906 * 26 24 22 29 29 H 1.48500 * 109.47604 * 330.00503 * 26 24 22 30 30 H 1.09001 * 109.46738 * 299.99864 * 1 2 3 31 31 H 1.09001 * 109.47027 * 59.99281 * 1 2 3 32 32 H 1.08991 * 109.47553 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46930 * 239.99628 * 2 1 3 34 34 H 1.09001 * 109.47027 * 120.00719 * 2 1 3 35 35 H 1.09005 * 109.58355 * 294.37368 * 5 3 2 36 36 H 1.09000 * 109.58463 * 54.65115 * 5 3 2 37 37 H 1.07997 * 120.90129 * 359.97438 * 10 9 7 38 38 H 1.08999 * 109.47341 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.47052 * 300.00169 * 13 12 11 40 40 H 1.08997 * 109.47340 * 60.00337 * 13 12 11 41 41 H 1.08003 * 119.00720 * 180.02562 * 15 14 11 42 42 H 1.09002 * 109.58351 * 173.38886 * 17 6 5 43 43 H 1.08999 * 109.58499 * 293.67120 * 17 6 5 44 44 H 1.09004 * 109.49568 * 65.31483 * 18 17 6 45 45 H 1.09002 * 109.49554 * 185.38066 * 18 17 6 46 46 H 0.97008 * 120.00257 * 264.91459 * 21 19 18 47 47 H 0.96995 * 119.99973 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6058 1.9819 -0.8416 5 6 1.6367 2.1274 1.3095 6 7 2.2432 3.4649 1.3501 7 6 1.4837 4.5571 1.5657 8 8 0.2732 4.4593 1.5939 9 6 2.1263 5.8799 1.7687 10 6 1.3585 7.0401 1.8081 11 6 2.0128 8.2581 2.0011 12 8 1.3106 9.4162 2.0466 13 6 2.0555 10.6191 2.2468 14 7 3.3323 8.2651 2.1382 15 6 4.0244 7.1435 2.0949 16 7 3.4467 5.9744 1.9210 17 6 3.6937 3.5891 1.1514 18 6 4.0742 2.8878 -0.1564 19 6 3.5655 1.4447 -0.1241 20 1 4.0001 0.9260 0.7303 21 7 3.9557 0.7613 -1.3597 22 6 5.1939 0.1854 -1.4620 23 1 5.8828 0.2354 -0.6319 24 6 5.5634 -0.4626 -2.6327 25 7 4.7238 -0.5231 -3.6446 26 14 7.2526 -1.2475 -2.7724 27 1 7.1837 -2.6564 -2.3079 28 1 7.6981 -1.2147 -4.1886 29 1 8.2189 -0.4959 -1.9319 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5513 2.2169 1.3558 36 1 1.9910 1.5374 2.1548 37 1 0.2856 6.9994 1.6918 38 1 1.3743 11.4699 2.2635 39 1 2.5888 10.5625 3.1958 40 1 2.7716 10.7426 1.4344 41 1 5.0974 7.1854 2.2106 42 1 3.9656 4.6431 1.0932 43 1 4.2180 3.1219 1.9850 44 1 3.6211 3.4140 -0.9966 45 1 5.1584 2.8894 -0.2680 46 1 3.3369 0.7167 -2.1055 47 1 4.9821 -0.9756 -4.4627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037847181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:34 Heat of formation + Delta-G solvation = -14.676252 kcal Electronic energy + Delta-G solvation = -29267.771584 eV Core-core repulsion = 25258.400102 eV Total energy + Delta-G solvation = -4009.371482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.63761 -41.17951 -39.61515 -39.10533 -36.30125 -35.42580 -34.39736 -33.45232 -33.00403 -31.06881 -30.14877 -28.71275 -27.17897 -25.78556 -25.45443 -24.92480 -24.11653 -22.23813 -21.72772 -20.86616 -19.50428 -19.34005 -18.95985 -17.55870 -17.36542 -17.16817 -16.81285 -16.67765 -16.49580 -16.11656 -15.71263 -15.51178 -15.33332 -15.14546 -14.99982 -14.66887 -14.50409 -14.44253 -13.95919 -13.58712 -13.30522 -13.05421 -12.93008 -12.83396 -12.74054 -12.62599 -12.51527 -12.17090 -12.10523 -11.84137 -11.79632 -11.58226 -11.57041 -11.52734 -11.47922 -11.07588 -10.90359 -10.39063 -10.04361 -9.71036 -8.91108 -7.88858 -5.16109 -0.71543 -0.17249 1.48905 1.49704 1.50594 1.56259 1.58794 1.96903 2.59369 2.61070 2.72183 2.94895 3.37405 3.44770 3.73332 3.79306 3.80396 3.96941 4.05644 4.17380 4.37253 4.39695 4.40228 4.40570 4.41993 4.45868 4.52779 4.65335 4.69935 4.80177 4.81137 4.90201 4.92111 5.01899 5.07555 5.15746 5.25724 5.35010 5.40942 5.51389 5.54356 5.56936 5.61940 5.71407 5.92549 6.25436 6.32690 6.71657 6.90605 7.38924 8.15327 8.38793 9.34818 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014744 B = 0.002895 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.671174 B = 9668.238540 C =11070.997561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.092 4.092 4 H 0.050 0.950 5 C 0.121 3.879 6 N -0.579 5.579 7 C 0.564 3.436 8 O -0.558 6.558 9 C 0.155 3.845 10 C -0.192 4.192 11 C 0.366 3.634 12 O -0.306 6.306 13 C 0.030 3.970 14 N -0.564 5.564 15 C 0.337 3.663 16 N -0.515 5.515 17 C 0.083 3.917 18 C -0.140 4.140 19 C 0.178 3.822 20 H 0.048 0.952 21 N -0.731 5.731 22 C -0.227 4.227 23 H 0.078 0.922 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.967 3.033 27 H -0.290 1.290 28 H -0.301 1.301 29 H -0.267 1.267 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.164 0.836 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.247 0.753 42 H 0.155 0.845 43 H 0.080 0.920 44 H 0.036 0.964 45 H 0.066 0.934 46 H 0.370 0.630 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 19.513 16.005 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.309 5.309 7 C 0.350 3.650 8 O -0.436 6.436 9 C 0.012 3.988 10 C -0.217 4.217 11 C 0.178 3.822 12 O -0.210 6.210 13 C -0.064 4.064 14 N -0.295 5.295 15 C 0.051 3.949 16 N -0.237 5.237 17 C -0.039 4.039 18 C -0.181 4.181 19 C 0.069 3.931 20 H 0.066 0.934 21 N -0.370 5.370 22 C -0.359 4.359 23 H 0.096 0.904 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.797 3.203 27 H -0.218 1.218 28 H -0.228 1.228 29 H -0.192 1.192 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.181 0.819 38 H 0.146 0.854 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.263 0.737 42 H 0.171 0.829 43 H 0.098 0.902 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.201 0.799 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.502 19.521 16.172 25.746 hybrid contribution 0.020 -0.665 -1.161 1.338 sum -4.482 18.856 15.011 24.515 Atomic orbital electron populations 1.21782 0.94801 1.01949 1.01772 1.21352 0.96112 0.94983 1.02026 1.21619 0.95893 0.96581 0.97141 0.93123 1.21816 0.99615 0.81287 0.97367 1.48093 1.09852 1.05926 1.66986 1.17992 0.85870 0.83489 0.77601 1.90760 1.14083 1.85529 1.53276 1.21199 0.90170 0.93411 0.94003 1.21875 1.03981 0.89727 1.06081 1.20104 0.87769 0.87070 0.87301 1.86269 1.35870 1.13918 1.84897 1.23297 0.98055 0.82346 1.02654 1.68168 1.06419 1.34269 1.20597 1.25722 1.02399 0.80381 0.86379 1.68401 1.09356 1.28844 1.17082 1.23099 0.77404 1.07021 0.96419 1.22494 1.01125 0.97515 0.97004 1.20457 0.92338 0.91370 0.88925 0.93362 1.42598 1.15487 1.65004 1.13905 1.19596 0.92552 1.25442 0.98299 0.90439 1.25486 1.01613 1.03346 0.96575 1.69826 1.37125 1.50219 1.05172 0.85217 0.80450 0.78383 0.76207 1.21770 1.22814 1.19211 0.91551 0.93674 0.92066 0.93499 0.91517 0.88953 0.89326 0.81878 0.85429 0.91359 0.91587 0.73737 0.82944 0.90225 0.94503 0.91552 0.79878 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.67 71.98 0.70 -3.25 16 2 C -0.11 -3.47 5.31 30.59 0.16 -3.30 16 3 C -0.09 -3.06 1.92 -10.72 -0.02 -3.08 16 4 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 5 C 0.12 3.40 5.34 86.37 0.46 3.86 16 6 N -0.58 -16.27 2.97 -821.62 -2.44 -18.71 16 7 C 0.56 16.37 7.67 86.97 0.67 17.03 16 8 O -0.56 -18.72 15.88 -3.66 -0.06 -18.78 16 9 C 0.16 3.75 6.61 41.88 0.28 4.03 16 10 C -0.19 -4.26 9.67 22.83 0.22 -4.04 16 11 C 0.37 7.16 7.53 84.90 0.64 7.80 16 12 O -0.31 -5.26 10.49 -88.15 -0.92 -6.18 16 13 C 0.03 0.30 10.41 113.37 1.18 1.48 16 14 N -0.56 -9.74 9.36 -313.00 -2.93 -12.67 16 15 C 0.34 5.15 12.27 180.93 2.22 7.37 16 16 N -0.52 -10.45 6.30 -189.34 -1.19 -11.64 16 17 C 0.08 2.18 5.92 86.36 0.51 2.69 16 18 C -0.14 -4.78 5.66 30.67 0.17 -4.61 16 19 C 0.18 6.74 2.19 45.02 0.10 6.84 16 20 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 21 N -0.73 -35.82 4.33 -322.82 -1.40 -37.22 16 22 C -0.23 -12.20 9.93 84.03 0.83 -11.37 16 23 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 25 N -0.97 -59.46 13.06 21.65 0.28 -59.17 16 26 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 27 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 28 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 29 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 30 H 0.07 1.58 6.70 -2.39 -0.02 1.56 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.88 7.22 -2.39 -0.02 1.87 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.63 5.72 -2.38 -0.01 2.61 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.16 3.59 7.76 -2.91 -0.02 3.56 16 38 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 40 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 41 H 0.25 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.15 3.69 4.01 -62.08 -0.25 3.44 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.37 20.01 7.51 -92.70 -0.70 19.31 16 47 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -69.03 379.59 2.01 -67.02 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.06 Total: 32.09 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 8.59 Total: 17.49 kcal Atomic # 7 Polarization: -131.73 SS G_CDS: -7.68 Total: -139.41 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.98 Total: -24.96 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.03 2.01 -67.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037847181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.345 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds