Wall clock time and date at job start Tue Mar 31 2020 19:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47322 * 2 1 4 4 H 1.09003 * 109.49993 * 55.06090 * 3 2 1 5 5 C 1.53198 * 109.49414 * 294.99757 * 3 2 1 6 6 N 1.46925 * 108.77409 * 185.41260 * 5 3 2 7 7 C 1.34774 * 120.63126 * 233.63193 * 6 5 3 8 8 O 1.21465 * 120.00338 * 356.42626 * 7 6 5 9 9 C 1.48565 * 120.00116 * 176.43095 * 7 6 5 10 10 C 1.37921 * 120.20936 * 217.68969 * 9 7 6 11 11 C 1.41611 * 118.32847 * 179.74392 * 10 9 7 12 12 O 1.21909 * 120.71460 * 180.26151 * 11 10 9 13 13 N 1.34977 * 118.57419 * 0.49468 * 11 10 9 14 14 C 1.46500 * 119.89459 * 179.75646 * 13 11 10 15 15 C 1.34779 * 120.21460 * 359.78301 * 13 11 10 16 16 N 1.30431 * 121.82364 * 359.95519 * 15 13 11 17 17 C 1.46932 * 118.73912 * 53.60931 * 6 5 3 18 18 C 1.53188 * 108.77366 * 306.39258 * 17 6 5 19 19 C 1.53038 * 109.49848 * 175.16128 * 3 2 1 20 20 H 1.09005 * 109.45922 * 301.33405 * 19 3 2 21 21 N 1.46500 * 109.46079 * 61.29304 * 19 3 2 22 22 C 1.36936 * 120.00236 * 205.00144 * 21 19 3 23 23 H 1.07995 * 119.99569 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00003 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99694 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00325 * 359.97438 * 24 22 21 27 27 H 1.48510 * 109.46836 * 90.00256 * 26 24 22 28 28 H 1.48494 * 109.47451 * 210.00152 * 26 24 22 29 29 H 1.48495 * 109.47045 * 330.00468 * 26 24 22 30 30 H 1.09000 * 109.46791 * 59.99914 * 1 2 3 31 31 H 1.09006 * 109.46694 * 300.00037 * 1 2 3 32 32 H 1.08996 * 109.47063 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46665 * 119.99601 * 2 1 3 34 34 H 1.08998 * 109.47178 * 239.99564 * 2 1 3 35 35 H 1.09001 * 109.58500 * 305.20197 * 5 3 2 36 36 H 1.09000 * 109.58447 * 65.48462 * 5 3 2 37 37 H 1.08003 * 120.83303 * 359.96980 * 10 9 7 38 38 H 1.09000 * 109.47284 * 180.02562 * 14 13 11 39 39 H 1.08997 * 109.47569 * 300.02625 * 14 13 11 40 40 H 1.09003 * 109.47002 * 60.02868 * 14 13 11 41 41 H 1.08001 * 119.08783 * 179.97438 * 15 13 11 42 42 H 1.08996 * 109.58146 * 66.17619 * 17 6 5 43 43 H 1.08994 * 109.58729 * 186.45936 * 17 6 5 44 44 H 1.08999 * 109.49653 * 174.58475 * 18 17 6 45 45 H 1.09001 * 109.49940 * 294.68194 * 18 17 6 46 46 H 0.97003 * 120.00182 * 25.00054 * 21 19 3 47 47 H 0.97008 * 119.99991 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9817 0.8423 5 6 1.6352 2.1279 -1.3089 6 7 2.2416 3.4655 -1.3495 7 6 1.4817 4.5579 -1.5630 8 8 0.2943 4.4371 -1.7887 9 6 2.0962 5.9099 -1.5226 10 6 1.4039 6.9708 -0.9772 11 6 2.0297 8.2409 -0.9541 12 8 1.4594 9.2075 -0.4781 13 7 3.2693 8.3594 -1.4749 14 6 3.9416 9.6610 -1.4711 15 6 3.8904 7.2841 -1.9990 16 7 3.3274 6.1079 -2.0218 17 6 3.6924 3.5898 -1.1523 18 6 4.0742 2.8879 0.1547 19 6 3.5656 1.4449 0.1217 20 1 3.8574 0.9358 1.0404 21 7 4.1481 0.7483 -1.0280 22 6 5.3861 0.1725 -0.9245 23 1 5.9333 0.2322 0.0047 24 6 5.9382 -0.4870 -2.0140 25 7 7.1280 -1.0409 -1.9143 26 14 4.9920 -0.5896 -3.6214 27 1 5.3326 0.5793 -4.4717 28 1 5.3570 -1.8415 -4.3317 29 1 3.5342 -0.5880 -3.3385 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.9909 1.5395 -2.1547 36 1 0.5496 2.2150 -1.3551 37 1 0.4110 6.8354 -0.5744 38 1 4.9257 9.5631 -1.9295 39 1 3.3473 10.3787 -2.0365 40 1 4.0522 10.0098 -0.4443 41 1 4.8820 7.3997 -2.4112 42 1 4.2157 3.1206 -1.9854 43 1 3.9646 4.6437 -1.0967 44 1 5.1586 2.8891 0.2649 45 1 3.6220 3.4138 0.9956 46 1 3.6567 0.6950 -1.8627 47 1 7.5136 -1.5022 -2.6756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037865034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:12 Heat of formation + Delta-G solvation = -20.797823 kcal Electronic energy + Delta-G solvation = -30037.126641 eV Core-core repulsion = 26027.489708 eV Total energy + Delta-G solvation = -4009.636933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.98617 -41.43435 -39.48691 -38.79371 -36.50489 -35.93465 -35.31594 -33.56615 -32.28712 -31.47510 -30.41688 -29.10516 -27.00990 -25.77004 -25.34340 -24.98632 -24.62655 -22.20024 -21.53492 -20.07012 -19.88302 -19.57762 -18.50563 -18.20141 -17.70211 -17.33225 -16.82526 -16.67722 -16.31150 -15.93681 -15.75574 -15.59926 -15.15407 -14.96651 -14.78207 -14.45346 -14.41613 -14.38563 -14.22176 -14.10109 -13.72229 -13.46088 -13.26844 -12.94245 -12.92651 -12.68212 -12.46894 -12.16734 -12.02189 -11.90889 -11.85536 -11.64032 -11.52810 -11.49268 -11.38065 -11.19654 -10.98125 -10.66605 -9.83049 -9.67346 -9.20406 -7.94855 -5.25502 -0.82783 0.49449 1.32715 1.40564 1.40881 1.43232 1.47908 1.72568 2.38082 2.52511 2.82143 3.16810 3.37687 3.55603 3.62478 3.72310 3.84968 3.94145 4.00707 4.07958 4.29424 4.33025 4.36027 4.40789 4.43053 4.44080 4.47559 4.59600 4.63957 4.80904 4.82286 4.94379 4.96530 5.02483 5.10776 5.15673 5.22665 5.26220 5.28823 5.36252 5.40366 5.48021 5.61142 5.87488 6.21045 6.29305 6.48964 6.54304 6.84799 7.15738 7.92343 8.10823 9.26987 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.003749 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.117007 B = 7467.375976 C = 8692.152173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.095 4.095 4 H 0.090 0.910 5 C 0.116 3.884 6 N -0.580 5.580 7 C 0.564 3.436 8 O -0.562 6.562 9 C 0.150 3.850 10 C -0.242 4.242 11 C 0.517 3.483 12 O -0.567 6.567 13 N -0.515 5.515 14 C 0.053 3.947 15 C 0.396 3.604 16 N -0.543 5.543 17 C 0.110 3.890 18 C -0.144 4.144 19 C 0.177 3.823 20 H 0.051 0.949 21 N -0.741 5.741 22 C -0.211 4.211 23 H 0.063 0.937 24 C -0.056 4.056 25 N -0.984 5.984 26 Si 0.936 3.064 27 H -0.280 1.280 28 H -0.302 1.302 29 H -0.258 1.258 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.272 0.728 42 H 0.060 0.940 43 H 0.125 0.875 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.361 0.639 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 19.356 1.085 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.115 4.115 4 H 0.108 0.892 5 C -0.006 4.006 6 N -0.310 5.310 7 C 0.351 3.649 8 O -0.442 6.442 9 C 0.028 3.972 10 C -0.269 4.269 11 C 0.316 3.684 12 O -0.447 6.447 13 N -0.231 5.231 14 C -0.087 4.087 15 C 0.114 3.886 16 N -0.268 5.268 17 C -0.011 4.011 18 C -0.185 4.185 19 C 0.069 3.931 20 H 0.069 0.931 21 N -0.385 5.385 22 C -0.342 4.342 23 H 0.081 0.919 24 C -0.247 4.247 25 N -0.635 5.635 26 Si 0.765 3.235 27 H -0.206 1.206 28 H -0.229 1.229 29 H -0.183 1.183 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.287 0.713 42 H 0.078 0.922 43 H 0.142 0.858 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.196 0.804 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.991 19.121 1.089 20.388 hybrid contribution -0.637 -0.110 -0.760 0.997 sum -7.628 19.012 0.329 20.487 Atomic orbital electron populations 1.21808 0.94592 1.02102 1.02051 1.21399 0.96256 0.94899 1.02189 1.21723 0.95571 0.96833 0.97395 0.89195 1.21740 0.99358 0.81445 0.98034 1.48092 1.09513 1.05809 1.67566 1.18233 0.85491 0.83989 0.77192 1.90763 1.16050 1.86392 1.50963 1.21058 0.90501 0.93417 0.92232 1.23215 1.03766 0.91321 1.08613 1.17164 0.81719 0.89571 0.79911 1.90930 1.64389 1.41052 1.48350 1.46800 1.15665 1.13972 1.46616 1.22614 1.00072 0.80550 1.05448 1.26287 0.98822 0.78977 0.84527 1.68495 1.10409 1.22223 1.25630 1.22189 0.77285 1.03813 0.97853 1.22418 1.01604 0.97339 0.97111 1.20415 0.90936 0.91469 0.90281 0.93133 1.42786 1.18116 1.65839 1.11732 1.18992 0.92723 1.24872 0.97598 0.91933 1.25241 0.97393 1.01246 1.00857 1.69853 1.18471 1.43572 1.31624 0.85703 0.79470 0.76830 0.81519 1.20593 1.22946 1.18330 0.92895 0.91868 0.92057 0.91608 0.93276 0.92458 0.88765 0.83062 0.83456 0.89963 0.89860 0.71264 0.92157 0.85797 0.91321 0.91045 0.80443 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.67 71.98 0.70 -2.72 16 2 C -0.11 -3.09 5.19 30.60 0.16 -2.93 16 3 C -0.10 -2.74 2.14 -10.71 -0.02 -2.76 16 4 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 5 C 0.12 3.51 5.02 86.36 0.43 3.94 16 6 N -0.58 -17.19 2.97 -821.49 -2.44 -19.63 16 7 C 0.56 17.19 7.51 87.00 0.65 17.85 16 8 O -0.56 -20.12 16.32 -3.61 -0.06 -20.18 16 9 C 0.15 3.74 6.07 41.45 0.25 4.00 16 10 C -0.24 -6.07 9.70 23.03 0.22 -5.85 16 11 C 0.52 11.82 7.47 85.04 0.64 12.45 16 12 O -0.57 -16.72 17.18 -5.02 -0.09 -16.80 16 13 N -0.52 -6.39 2.97 -678.25 -2.01 -8.40 16 14 C 0.05 0.22 10.13 127.77 1.29 1.52 16 15 C 0.40 3.72 11.48 180.37 2.07 5.79 16 16 N -0.54 -10.29 7.25 -188.16 -1.36 -11.65 16 17 C 0.11 3.14 5.78 86.36 0.50 3.64 16 18 C -0.14 -4.27 5.78 30.67 0.18 -4.09 16 19 C 0.18 6.01 2.53 45.02 0.11 6.12 16 20 H 0.05 1.82 8.08 -2.38 -0.02 1.81 16 21 N -0.74 -31.21 3.52 -322.82 -1.14 -32.35 16 22 C -0.21 -11.06 10.41 84.03 0.87 -10.18 16 23 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 24 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 25 N -0.98 -60.73 13.97 21.65 0.30 -60.43 16 26 Si 0.94 44.17 27.74 68.60 1.90 46.07 16 27 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 28 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 29 H -0.26 -11.18 6.52 99.48 0.65 -10.53 16 30 H 0.05 1.23 6.69 -2.39 -0.02 1.21 16 31 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.05 1.61 7.69 -2.39 -0.02 1.59 16 35 H 0.06 1.89 6.64 -2.39 -0.02 1.87 16 36 H 0.09 2.81 5.74 -2.39 -0.01 2.80 16 37 H 0.15 4.06 8.05 -2.91 -0.02 4.04 16 38 H 0.15 -0.85 7.71 -2.39 -0.02 -0.87 16 39 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.27 -0.86 7.79 -2.91 -0.02 -0.88 16 42 H 0.06 2.02 7.74 -2.39 -0.02 2.00 16 43 H 0.12 2.99 4.48 -2.39 -0.01 2.98 16 44 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.36 15.24 3.80 -92.71 -0.35 14.89 16 47 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -79.21 372.95 4.21 -75.00 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.58 Total: 24.28 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 8.52 Total: 24.10 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -6.65 Total: -132.47 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.15 Total: -36.98 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.90 Total: 46.07 kcal Total: -79.21 4.21 -75.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037865034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.203 kcal (2) G-P(sol) polarization free energy of solvation -79.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds