Wall clock time and date at job start Tue Mar 31 2020 19:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46608 * 2 1 4 4 H 1.08997 * 109.52842 * 304.91705 * 3 2 1 5 5 C 1.53190 * 109.50005 * 65.00609 * 3 2 1 6 6 N 1.46925 * 108.89538 * 174.65307 * 5 3 2 7 7 C 1.34778 * 120.63104 * 126.29545 * 6 5 3 8 8 O 1.21461 * 120.00034 * 352.40842 * 7 6 5 9 9 C 1.48561 * 119.99884 * 172.40243 * 7 6 5 10 10 C 1.37922 * 120.20531 * 171.31868 * 9 7 6 11 11 C 1.41622 * 118.32716 * 180.02562 * 10 9 7 12 12 O 1.21901 * 120.71240 * 180.02562 * 11 10 9 13 13 N 1.34978 * 118.57115 * 359.97438 * 11 10 9 14 14 C 1.46505 * 119.89037 * 179.97438 * 13 11 10 15 15 C 1.34777 * 120.21888 * 359.97438 * 13 11 10 16 16 N 1.30440 * 121.82010 * 359.71320 * 15 13 11 17 17 C 1.46928 * 118.73995 * 306.31912 * 6 5 3 18 18 C 1.53193 * 108.77520 * 53.60677 * 17 6 5 19 19 C 1.53049 * 109.31187 * 305.36812 * 18 17 6 20 20 H 1.08996 * 109.45605 * 181.37522 * 19 18 17 21 21 N 1.46504 * 109.45813 * 301.34228 * 19 18 17 22 22 C 1.36939 * 119.99937 * 275.00260 * 21 19 18 23 23 H 1.07995 * 120.00072 * 359.97438 * 22 21 19 24 24 C 1.38807 * 119.99554 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00353 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99621 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47216 * 89.99827 * 26 24 22 28 28 H 1.48509 * 109.46637 * 209.99881 * 26 24 22 29 29 H 1.48501 * 109.46991 * 329.99504 * 26 24 22 30 30 H 1.08994 * 109.47606 * 59.99565 * 1 2 3 31 31 H 1.09001 * 109.47303 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47047 * 299.99666 * 1 2 3 33 33 H 1.08996 * 109.46562 * 240.00274 * 2 1 3 34 34 H 1.08991 * 109.47087 * 119.99887 * 2 1 3 35 35 H 1.08999 * 109.58776 * 54.79415 * 5 3 2 36 36 H 1.09004 * 109.58410 * 294.51339 * 5 3 2 37 37 H 1.07997 * 120.84054 * 0.02562 * 10 9 7 38 38 H 1.08993 * 109.47282 * 90.00360 * 14 13 11 39 39 H 1.09006 * 109.46928 * 210.00090 * 14 13 11 40 40 H 1.08996 * 109.46832 * 329.99524 * 14 13 11 41 41 H 1.08006 * 119.09005 * 179.97438 * 15 13 11 42 42 H 1.08995 * 109.58489 * 173.39395 * 17 6 5 43 43 H 1.08998 * 109.58286 * 293.82008 * 17 6 5 44 44 H 1.08996 * 109.49450 * 65.31761 * 18 17 6 45 45 H 1.08994 * 109.49417 * 185.38533 * 18 17 6 46 46 H 0.97000 * 119.99803 * 95.00349 * 21 19 18 47 47 H 0.97002 * 120.00168 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6070 1.9820 -0.8423 5 6 1.6351 2.1280 1.3088 6 7 2.2388 3.4668 1.3513 7 6 1.4764 4.5575 1.5647 8 8 0.2661 4.4576 1.5867 9 6 2.1163 5.8819 1.7733 10 6 1.3468 7.0257 1.8135 11 6 1.9981 8.2672 2.0139 12 8 1.3603 9.3051 2.0572 13 7 3.3403 8.2763 2.1569 14 6 4.0437 9.5444 2.3651 15 6 4.0354 7.1226 2.1089 16 7 3.4471 5.9721 1.9310 17 6 3.6895 3.5941 1.1562 18 6 4.0745 2.8941 -0.1509 19 6 3.5688 1.4499 -0.1197 20 1 3.8627 0.9423 -1.0384 21 7 4.1511 0.7536 1.0303 22 6 5.3899 0.1791 0.9275 23 1 5.9374 0.2390 -0.0015 24 6 5.9413 -0.4810 2.0169 25 7 5.2738 -0.5544 3.1489 26 14 7.6315 -1.2640 1.8768 27 1 8.6689 -0.2754 2.2661 28 1 7.7074 -2.4421 2.7779 29 1 7.8617 -1.6973 0.4752 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.9908 1.5397 2.1547 36 1 0.5495 2.2150 1.3551 37 1 0.2744 6.9761 1.6951 38 1 4.1107 9.7518 3.4330 39 1 5.0472 9.4766 1.9446 40 1 3.4969 10.3483 1.8724 41 1 5.1088 7.1511 2.2252 42 1 3.9594 4.6486 1.0992 43 1 4.2128 3.1253 1.9896 44 1 3.6225 3.4197 -0.9919 45 1 5.1590 2.8979 -0.2598 46 1 3.6591 0.6995 1.8645 47 1 5.6590 -1.0160 3.9101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037865035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:17 Heat of formation + Delta-G solvation = 5.205906 kcal Electronic energy + Delta-G solvation = -29916.198670 eV Core-core repulsion = 25907.689344 eV Total energy + Delta-G solvation = -4008.509327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.10952 -40.03793 -38.05966 -37.70109 -35.61670 -34.32528 -33.70888 -31.66930 -31.31110 -29.43715 -29.04114 -28.08283 -25.70880 -24.89522 -23.88147 -23.63821 -23.30213 -20.80340 -20.33975 -18.93821 -18.38347 -17.59158 -17.28277 -17.09529 -16.76352 -16.08505 -15.64718 -15.17564 -14.86637 -14.58676 -14.49059 -13.99506 -13.86171 -13.72994 -13.55030 -13.29795 -13.23532 -13.13157 -13.04978 -12.84895 -12.53288 -12.17372 -11.80948 -11.39861 -11.14189 -11.01731 -10.84086 -10.76800 -10.71650 -10.66648 -10.36407 -10.25234 -10.16770 -10.10446 -9.75438 -9.53274 -9.26792 -8.91312 -8.71231 -8.18565 -6.94258 -5.77361 -3.05189 0.05713 1.34724 2.05526 2.68520 3.05944 3.41291 3.47480 3.48813 3.49494 3.66766 4.11011 4.23812 4.53150 4.58511 4.76118 4.85674 5.08222 5.15947 5.20960 5.30763 5.39206 5.43699 5.59647 5.65169 5.71681 5.72383 5.85393 5.86457 5.92182 6.05440 6.13147 6.17667 6.21539 6.35393 6.41113 6.47407 6.55048 6.65396 6.68274 6.84038 6.86047 7.00309 7.06932 7.30682 7.43553 7.69466 7.69973 8.23148 8.41161 9.52792 10.10405 10.45599 11.45100 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003610 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.710970 B = 7754.670244 C = 9492.844574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.066 0.934 5 C 0.115 3.885 6 N -0.573 5.573 7 C 0.561 3.439 8 O -0.538 6.538 9 C 0.139 3.861 10 C -0.217 4.217 11 C 0.519 3.481 12 O -0.531 6.531 13 N -0.524 5.524 14 C 0.056 3.944 15 C 0.368 3.632 16 N -0.507 5.507 17 C 0.080 3.920 18 C -0.150 4.150 19 C 0.177 3.823 20 H 0.048 0.952 21 N -0.718 5.718 22 C -0.235 4.235 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.903 3.097 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.169 0.831 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.212 0.788 42 H 0.133 0.867 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.073 0.927 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.861 15.953 -3.680 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.007 4.007 6 N -0.302 5.302 7 C 0.346 3.654 8 O -0.416 6.416 9 C 0.018 3.982 10 C -0.244 4.244 11 C 0.317 3.683 12 O -0.408 6.408 13 N -0.242 5.242 14 C -0.087 4.087 15 C 0.084 3.916 16 N -0.230 5.230 17 C -0.041 4.041 18 C -0.191 4.191 19 C 0.066 3.934 20 H 0.066 0.934 21 N -0.360 5.360 22 C -0.366 4.366 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.734 3.266 27 H -0.219 1.219 28 H -0.220 1.220 29 H -0.209 1.209 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.186 0.814 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.228 0.772 42 H 0.150 0.850 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.473 15.693 -3.722 16.317 hybrid contribution 0.659 0.062 0.306 0.729 sum -1.813 15.755 -3.416 16.223 Atomic orbital electron populations 1.21857 0.96821 1.01020 1.01376 1.21409 0.94252 0.95728 1.03375 1.21790 0.97533 0.96063 0.96812 0.91597 1.21804 0.98810 0.81382 0.98708 1.48048 1.09719 1.05746 1.66719 1.17826 0.86140 0.82940 0.78501 1.90759 1.13163 1.85028 1.52698 1.21556 0.88966 0.94932 0.92734 1.23392 1.03576 0.89852 1.07531 1.17311 0.80773 0.91029 0.79140 1.90945 1.63701 1.34135 1.52033 1.46716 1.09777 1.10320 1.57421 1.22261 0.97850 0.84590 1.03953 1.25313 0.99778 0.79794 0.86676 1.68606 1.10344 1.21794 1.22289 1.22924 0.77484 1.04976 0.98749 1.22544 1.01545 0.98892 0.96115 1.20307 0.89600 0.91004 0.92447 0.93370 1.42455 1.18892 1.64054 1.10607 1.19210 0.93517 1.26819 0.97042 0.91327 1.24679 0.98439 1.01574 0.96060 1.69648 1.37969 1.48179 1.02281 0.86256 0.84560 0.78744 0.76994 1.21887 1.21968 1.20918 0.93369 0.93172 0.92782 0.92021 0.90475 0.90360 0.89589 0.81369 0.89946 0.88817 0.88599 0.77188 0.85030 0.90065 0.93858 0.90874 0.78140 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.75 5.21 -26.73 -0.14 -1.89 16 3 C -0.10 -1.67 2.15 -90.34 -0.19 -1.86 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 5 C 0.11 1.95 5.03 -3.71 -0.02 1.93 16 6 N -0.57 -9.47 2.97 -173.61 -0.52 -9.99 16 7 C 0.56 9.27 7.67 -12.00 -0.09 9.18 16 8 O -0.54 -10.09 15.83 5.40 0.09 -10.00 16 9 C 0.14 1.91 6.60 -82.64 -0.55 1.36 16 10 C -0.22 -2.89 9.66 -38.41 -0.37 -3.26 16 11 C 0.52 6.42 7.47 -14.88 -0.11 6.31 16 12 O -0.53 -8.05 16.77 5.01 0.08 -7.97 16 13 N -0.52 -4.29 2.97 -128.42 -0.38 -4.67 16 14 C 0.06 0.24 10.39 59.85 0.62 0.86 16 15 C 0.37 2.68 11.45 -90.67 -1.04 1.64 16 16 N -0.51 -5.74 6.22 -10.82 -0.07 -5.80 16 17 C 0.08 1.29 5.65 -3.71 -0.02 1.27 16 18 C -0.15 -2.47 5.78 -26.61 -0.15 -2.62 16 19 C 0.18 3.27 2.54 -67.72 -0.17 3.09 16 20 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 21 N -0.72 -16.25 3.73 -53.22 -0.20 -16.45 16 22 C -0.23 -6.02 9.93 -15.06 -0.15 -6.17 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -26.72 13.06 55.49 0.72 -26.00 16 26 Si 0.90 21.45 29.55 -169.99 -5.02 16.42 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.74 6.69 -51.93 -0.35 0.39 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.43 7.71 -51.93 -0.40 1.02 16 35 H 0.08 1.47 6.64 -51.93 -0.34 1.12 16 36 H 0.09 1.45 5.71 -51.93 -0.30 1.16 16 37 H 0.17 2.32 7.71 -52.49 -0.40 1.91 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.09 8.01 -51.93 -0.42 -0.33 16 40 H 0.10 0.54 7.44 -51.93 -0.39 0.16 16 41 H 0.21 0.49 8.01 -52.48 -0.42 0.07 16 42 H 0.13 1.84 3.98 -83.61 -0.33 1.51 16 43 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.38 9.35 5.95 -40.82 -0.24 9.11 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 373.93 15.07 5.64 5.64 Total: -1.00 -33.43 373.93 -8.70 -42.13 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.92 Total: 8.99 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -2.12 Total: 7.69 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.44 Total: -62.90 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.17 Total: -17.97 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.43 -8.70 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037865035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.336 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds