Wall clock time and date at job start Tue Mar 31 2020 19:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46608 * 2 1 4 4 H 1.08997 * 109.52842 * 304.91705 * 3 2 1 5 5 C 1.53190 * 109.50005 * 65.00609 * 3 2 1 6 6 N 1.46925 * 108.89538 * 174.65307 * 5 3 2 7 7 C 1.34778 * 120.63104 * 126.29545 * 6 5 3 8 8 O 1.21461 * 120.00034 * 352.40842 * 7 6 5 9 9 C 1.48561 * 119.99884 * 172.40243 * 7 6 5 10 10 C 1.37922 * 120.20531 * 171.31868 * 9 7 6 11 11 C 1.41622 * 118.32716 * 180.02562 * 10 9 7 12 12 O 1.21901 * 120.71240 * 180.02562 * 11 10 9 13 13 N 1.34978 * 118.57115 * 359.97438 * 11 10 9 14 14 C 1.46505 * 119.89037 * 179.97438 * 13 11 10 15 15 C 1.34777 * 120.21888 * 359.97438 * 13 11 10 16 16 N 1.30440 * 121.82010 * 359.71320 * 15 13 11 17 17 C 1.46928 * 118.73995 * 306.31912 * 6 5 3 18 18 C 1.53193 * 108.77520 * 53.60677 * 17 6 5 19 19 C 1.53049 * 109.31187 * 305.36812 * 18 17 6 20 20 H 1.08996 * 109.45605 * 181.37522 * 19 18 17 21 21 N 1.46504 * 109.45813 * 301.34228 * 19 18 17 22 22 C 1.36939 * 119.99937 * 275.00260 * 21 19 18 23 23 H 1.07995 * 120.00072 * 359.97438 * 22 21 19 24 24 C 1.38807 * 119.99554 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00353 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99621 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47216 * 89.99827 * 26 24 22 28 28 H 1.48509 * 109.46637 * 209.99881 * 26 24 22 29 29 H 1.48501 * 109.46991 * 329.99504 * 26 24 22 30 30 H 1.08994 * 109.47606 * 59.99565 * 1 2 3 31 31 H 1.09001 * 109.47303 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47047 * 299.99666 * 1 2 3 33 33 H 1.08996 * 109.46562 * 240.00274 * 2 1 3 34 34 H 1.08991 * 109.47087 * 119.99887 * 2 1 3 35 35 H 1.08999 * 109.58776 * 54.79415 * 5 3 2 36 36 H 1.09004 * 109.58410 * 294.51339 * 5 3 2 37 37 H 1.07997 * 120.84054 * 0.02562 * 10 9 7 38 38 H 1.08993 * 109.47282 * 90.00360 * 14 13 11 39 39 H 1.09006 * 109.46928 * 210.00090 * 14 13 11 40 40 H 1.08996 * 109.46832 * 329.99524 * 14 13 11 41 41 H 1.08006 * 119.09005 * 179.97438 * 15 13 11 42 42 H 1.08995 * 109.58489 * 173.39395 * 17 6 5 43 43 H 1.08998 * 109.58286 * 293.82008 * 17 6 5 44 44 H 1.08996 * 109.49450 * 65.31761 * 18 17 6 45 45 H 1.08994 * 109.49417 * 185.38533 * 18 17 6 46 46 H 0.97000 * 119.99803 * 95.00349 * 21 19 18 47 47 H 0.97002 * 120.00168 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6070 1.9820 -0.8423 5 6 1.6351 2.1280 1.3088 6 7 2.2388 3.4668 1.3513 7 6 1.4764 4.5575 1.5647 8 8 0.2661 4.4576 1.5867 9 6 2.1163 5.8819 1.7733 10 6 1.3468 7.0257 1.8135 11 6 1.9981 8.2672 2.0139 12 8 1.3603 9.3051 2.0572 13 7 3.3403 8.2763 2.1569 14 6 4.0437 9.5444 2.3651 15 6 4.0354 7.1226 2.1089 16 7 3.4471 5.9721 1.9310 17 6 3.6895 3.5941 1.1562 18 6 4.0745 2.8941 -0.1509 19 6 3.5688 1.4499 -0.1197 20 1 3.8627 0.9423 -1.0384 21 7 4.1511 0.7536 1.0303 22 6 5.3899 0.1791 0.9275 23 1 5.9374 0.2390 -0.0015 24 6 5.9413 -0.4810 2.0169 25 7 5.2738 -0.5544 3.1489 26 14 7.6315 -1.2640 1.8768 27 1 8.6689 -0.2754 2.2661 28 1 7.7074 -2.4421 2.7779 29 1 7.8617 -1.6973 0.4752 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.9908 1.5397 2.1547 36 1 0.5495 2.2150 1.3551 37 1 0.2744 6.9761 1.6951 38 1 4.1107 9.7518 3.4330 39 1 5.0472 9.4766 1.9446 40 1 3.4969 10.3483 1.8724 41 1 5.1088 7.1511 2.2252 42 1 3.9594 4.6486 1.0992 43 1 4.2128 3.1253 1.9896 44 1 3.6225 3.4197 -0.9919 45 1 5.1590 2.8979 -0.2598 46 1 3.6591 0.6995 1.8645 47 1 5.6590 -1.0160 3.9101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037865035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:16 Heat of formation + Delta-G solvation = -15.333604 kcal Electronic energy + Delta-G solvation = -29917.089330 eV Core-core repulsion = 25907.689344 eV Total energy + Delta-G solvation = -4009.399987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.98627 -41.33388 -39.35037 -38.80261 -36.50228 -35.79608 -35.23553 -33.37399 -32.26156 -30.94395 -30.30649 -29.01278 -26.90209 -25.74564 -25.50973 -24.91890 -24.62542 -22.15291 -21.51422 -20.10414 -19.58974 -19.20975 -18.37801 -18.15658 -17.58141 -17.29899 -16.75680 -16.65055 -16.21198 -15.95684 -15.74862 -15.41810 -15.22764 -14.84053 -14.73155 -14.41862 -14.40487 -14.33620 -14.07810 -13.92601 -13.54710 -13.45707 -13.06386 -12.88440 -12.80688 -12.62837 -12.37581 -12.20259 -12.06590 -11.82906 -11.79338 -11.58750 -11.46765 -11.42840 -11.30614 -11.09477 -10.88103 -10.24259 -9.78275 -9.55084 -8.84731 -7.82705 -5.08550 -0.87528 0.47695 1.36035 1.53364 1.54141 1.54473 1.61900 1.82881 2.49618 2.64736 2.79269 3.16863 3.51318 3.59427 3.78387 3.88622 3.89696 4.07125 4.10758 4.15166 4.34838 4.44698 4.46977 4.49020 4.49455 4.51479 4.57656 4.65282 4.73956 4.84769 4.91022 5.00918 5.06201 5.10653 5.17230 5.20741 5.26982 5.33207 5.39407 5.42454 5.55730 5.59368 5.66632 5.76229 6.32246 6.38580 6.52476 6.54517 6.93720 7.46330 8.22681 8.46906 9.40602 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003610 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.710970 B = 7754.670244 C = 9492.844574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.091 4.091 4 H 0.082 0.918 5 C 0.120 3.880 6 N -0.575 5.575 7 C 0.556 3.444 8 O -0.567 6.567 9 C 0.146 3.854 10 C -0.235 4.235 11 C 0.518 3.482 12 O -0.566 6.566 13 N -0.514 5.514 14 C 0.049 3.951 15 C 0.396 3.604 16 N -0.536 5.536 17 C 0.089 3.911 18 C -0.142 4.142 19 C 0.170 3.830 20 H 0.045 0.955 21 N -0.723 5.723 22 C -0.224 4.224 23 H 0.075 0.925 24 C -0.072 4.072 25 N -0.969 5.969 26 Si 0.963 3.037 27 H -0.288 1.288 28 H -0.305 1.305 29 H -0.273 1.273 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.152 0.848 38 H 0.095 0.905 39 H 0.141 0.859 40 H 0.081 0.919 41 H 0.273 0.727 42 H 0.162 0.838 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.373 0.627 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 17.737 -4.944 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.100 0.900 5 C -0.002 4.002 6 N -0.304 5.304 7 C 0.343 3.657 8 O -0.447 6.447 9 C 0.025 3.975 10 C -0.262 4.262 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.229 5.229 14 C -0.091 4.091 15 C 0.115 3.885 16 N -0.261 5.261 17 C -0.032 4.032 18 C -0.183 4.183 19 C 0.062 3.938 20 H 0.063 0.937 21 N -0.364 5.364 22 C -0.356 4.356 23 H 0.093 0.907 24 C -0.264 4.264 25 N -0.620 5.620 26 Si 0.793 3.207 27 H -0.215 1.215 28 H -0.232 1.232 29 H -0.199 1.199 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.170 0.830 38 H 0.114 0.886 39 H 0.159 0.841 40 H 0.099 0.901 41 H 0.288 0.712 42 H 0.178 0.822 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.206 0.794 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.419 17.529 -5.030 18.242 hybrid contribution 0.053 -0.414 0.681 0.798 sum -0.366 17.116 -4.349 17.663 Atomic orbital electron populations 1.21791 0.94802 1.01942 1.01852 1.21329 0.96009 0.95102 1.01831 1.21702 0.96098 0.96423 0.96896 0.89978 1.21646 0.98722 0.81732 0.98128 1.48091 1.09970 1.05543 1.66746 1.18266 0.85905 0.83916 0.77609 1.90734 1.14477 1.85737 1.53714 1.21117 0.90177 0.93133 0.93111 1.23256 1.03125 0.90614 1.09228 1.17169 0.82306 0.89903 0.78951 1.90923 1.64973 1.34971 1.53806 1.46782 1.08478 1.12250 1.55418 1.22649 0.99304 0.82038 1.05147 1.26381 1.01444 0.78030 0.82663 1.68341 1.08856 1.24252 1.24652 1.22946 0.76732 1.06455 0.97095 1.22429 1.01364 0.97306 0.97192 1.20527 0.90827 0.91875 0.90604 0.93745 1.42554 1.18129 1.64338 1.11351 1.19558 0.94172 1.25099 0.96758 0.90725 1.25347 1.01682 1.03254 0.96090 1.69810 1.39468 1.49876 1.02889 0.85293 0.81028 0.77390 0.76945 1.21526 1.23245 1.19852 0.91910 0.92098 0.93208 0.91874 0.93589 0.92844 0.89589 0.83011 0.88626 0.84072 0.90063 0.71185 0.82233 0.93382 0.91602 0.91199 0.79397 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.67 71.98 0.70 -3.20 16 2 C -0.10 -3.35 5.21 30.60 0.16 -3.19 16 3 C -0.09 -2.96 2.15 -10.61 -0.02 -2.98 16 4 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 5 C 0.12 4.16 5.03 86.36 0.43 4.60 16 6 N -0.57 -18.96 2.97 -821.51 -2.44 -21.40 16 7 C 0.56 18.46 7.67 87.00 0.67 19.12 16 8 O -0.57 -21.72 15.83 -3.59 -0.06 -21.78 16 9 C 0.15 3.91 6.60 41.45 0.27 4.18 16 10 C -0.24 -6.28 9.66 23.03 0.22 -6.06 16 11 C 0.52 12.31 7.47 85.04 0.63 12.95 16 12 O -0.57 -17.13 16.77 -4.99 -0.08 -17.21 16 13 N -0.51 -6.71 2.97 -678.23 -2.01 -8.72 16 14 C 0.05 0.22 10.39 127.77 1.33 1.55 16 15 C 0.40 4.02 11.45 180.36 2.07 6.09 16 16 N -0.54 -10.76 6.22 -188.15 -1.17 -11.93 16 17 C 0.09 2.77 5.65 86.36 0.49 3.26 16 18 C -0.14 -4.45 5.78 30.68 0.18 -4.28 16 19 C 0.17 6.20 2.54 45.13 0.11 6.32 16 20 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 21 N -0.72 -33.15 3.73 -322.30 -1.20 -34.35 16 22 C -0.22 -11.48 9.93 84.03 0.83 -10.64 16 23 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 24 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 25 N -0.97 -56.96 13.06 21.65 0.28 -56.68 16 26 Si 0.96 44.29 29.55 68.60 2.03 46.31 16 27 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 28 H -0.31 -14.52 7.11 99.48 0.71 -13.82 16 29 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.36 6.69 -2.39 -0.02 1.34 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.76 7.71 -2.39 -0.02 1.74 16 35 H 0.05 2.12 6.64 -2.39 -0.02 2.10 16 36 H 0.09 2.97 5.71 -2.39 -0.01 2.96 16 37 H 0.15 4.45 7.71 -2.91 -0.02 4.43 16 38 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.14 -0.63 8.01 -2.38 -0.02 -0.65 16 40 H 0.08 0.71 7.44 -2.39 -0.02 0.70 16 41 H 0.27 -0.67 8.01 -2.91 -0.02 -0.70 16 42 H 0.16 4.09 3.98 -64.94 -0.26 3.83 16 43 H 0.05 1.83 7.74 -2.39 -0.02 1.82 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.37 18.84 5.95 -92.71 -0.55 18.29 16 47 H 0.25 14.28 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -76.62 373.93 4.08 -72.55 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.20 Total: 28.92 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 8.54 Total: 24.28 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -6.55 Total: -133.08 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.14 Total: -38.99 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -76.62 4.08 -72.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037865035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.214 kcal (2) G-P(sol) polarization free energy of solvation -76.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds