Wall clock time and date at job start Tue Mar 31 2020 19:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47318 * 2 1 4 4 H 1.08998 * 109.52441 * 54.92121 * 3 2 1 5 5 C 1.52756 * 109.56668 * 294.96583 * 3 2 1 6 6 N 1.46926 * 109.00880 * 185.55063 * 5 3 2 7 7 C 1.34779 * 120.63422 * 233.58388 * 6 5 3 8 8 O 1.21599 * 119.99310 * 7.58784 * 7 6 5 9 9 C 1.47567 * 120.00206 * 187.58924 * 7 6 5 10 10 C 1.38049 * 119.72724 * 189.21139 * 9 7 6 11 11 N 1.34874 * 119.95259 * 179.97438 * 10 9 7 12 12 C 1.46500 * 120.31147 * 180.02562 * 11 10 9 13 13 C 1.34963 * 119.38231 * 0.02562 * 11 10 9 14 14 O 1.21858 * 120.26817 * 180.02562 * 13 11 10 15 15 C 1.41791 * 119.45582 * 0.02562 * 13 11 10 16 16 N 1.30604 * 120.03726 * 359.97082 * 15 13 11 17 17 C 1.46926 * 118.73676 * 53.31438 * 6 5 3 18 18 C 1.53193 * 108.77394 * 306.63750 * 17 6 5 19 19 C 1.53036 * 109.31248 * 54.63823 * 18 17 6 20 20 H 1.09001 * 109.46224 * 178.61276 * 19 18 17 21 21 N 1.46503 * 109.45858 * 58.64112 * 19 18 17 22 22 C 1.36933 * 120.00289 * 85.00354 * 21 19 18 23 23 H 1.08002 * 119.99826 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00348 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99868 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00199 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47199 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47235 * 119.99875 * 26 24 22 29 29 H 1.48495 * 109.47381 * 240.00080 * 26 24 22 30 30 H 1.08992 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46873 * 300.00417 * 1 2 3 32 32 H 1.09004 * 109.46916 * 59.99628 * 1 2 3 33 33 H 1.08997 * 109.47163 * 240.00035 * 2 1 3 34 34 H 1.09004 * 109.46916 * 120.00372 * 2 1 3 35 35 H 1.08999 * 109.50789 * 65.67006 * 5 3 2 36 36 H 1.09001 * 109.43677 * 305.38820 * 5 3 2 37 37 H 1.08004 * 120.02569 * 0.02562 * 10 9 7 38 38 H 1.09000 * 109.47097 * 179.97438 * 12 11 10 39 39 H 1.08998 * 109.47133 * 299.97302 * 12 11 10 40 40 H 1.08997 * 109.47381 * 59.97751 * 12 11 10 41 41 H 1.08002 * 119.97986 * 180.02562 * 15 13 11 42 42 H 1.08994 * 109.59116 * 66.42661 * 17 6 5 43 43 H 1.09005 * 109.58530 * 186.71217 * 17 6 5 44 44 H 1.09003 * 109.49975 * 174.59006 * 18 17 6 45 45 H 1.09001 * 109.49883 * 294.68843 * 18 17 6 46 46 H 0.97001 * 119.99707 * 264.99826 * 21 19 18 47 47 H 0.97003 * 119.99785 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6049 1.9827 0.8407 5 6 1.6378 2.1273 -1.3049 6 7 2.2452 3.4643 -1.3506 7 6 1.4858 4.5566 -1.5671 8 8 0.2739 4.4597 -1.5893 9 6 2.1251 5.8699 -1.7772 10 6 1.3497 7.0116 -1.8080 11 7 1.9293 8.2143 -1.9993 12 6 1.1140 9.4310 -2.0328 13 6 3.2674 8.2866 -2.1595 14 8 3.8079 9.3649 -2.3328 15 6 4.0390 7.0975 -2.1244 16 7 3.4549 5.9444 -1.9378 17 6 3.6954 3.5887 -1.1498 18 6 4.0738 2.8880 0.1589 19 6 3.5653 1.4450 0.1258 20 1 3.8547 0.9368 1.0456 21 7 4.1506 0.7475 -1.0220 22 6 5.3877 0.1705 -0.9145 23 1 5.9323 0.2299 0.0162 24 6 5.9420 -0.4907 -2.0019 25 7 5.2782 -0.5636 -3.1361 26 14 7.6300 -1.2772 -1.8555 27 1 8.1620 -1.0564 -0.4867 28 1 7.5208 -2.7354 -2.1142 29 1 8.5489 -0.6657 -2.8489 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5525 2.2173 -1.3491 36 1 1.9922 1.5359 -2.1491 37 1 0.2797 6.9419 -1.6782 38 1 1.7577 10.2954 -2.1957 39 1 0.3888 9.3602 -2.8434 40 1 0.5889 9.5428 -1.0842 41 1 5.1105 7.1456 -2.2513 42 1 4.2210 3.1188 -1.9810 43 1 3.9675 4.6427 -1.0943 44 1 5.1579 2.8892 0.2720 45 1 3.6194 3.4147 0.9981 46 1 3.6616 0.6944 -1.8580 47 1 5.6654 -1.0260 -3.8958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037889874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:18 Heat of formation + Delta-G solvation = 8.659843 kcal Electronic energy + Delta-G solvation = -29944.092533 eV Core-core repulsion = 25935.732980 eV Total energy + Delta-G solvation = -4008.359553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.20539 -40.01274 -38.12576 -37.40846 -36.37068 -34.25845 -33.69733 -31.63368 -30.85037 -29.41135 -28.99979 -28.25476 -25.68571 -24.87726 -23.87045 -23.67841 -23.27768 -20.80360 -20.47551 -18.99229 -18.52643 -17.49811 -17.34030 -17.09772 -16.80709 -15.98138 -15.56089 -15.14478 -14.97003 -14.65434 -14.47520 -14.13100 -13.98289 -13.83107 -13.57192 -13.28222 -13.19345 -13.04174 -12.91211 -12.62074 -12.51293 -12.21278 -11.97471 -11.47738 -11.37211 -11.33631 -10.99447 -10.88263 -10.72399 -10.58386 -10.27927 -10.23054 -10.10923 -10.05687 -9.71824 -9.50070 -9.07832 -8.72237 -8.58134 -8.08852 -6.90735 -5.74261 -3.01864 0.17707 0.98401 1.88304 2.74606 3.20701 3.44593 3.50384 3.50902 3.52652 3.85307 3.89270 4.28474 4.52646 4.61873 4.64552 4.72152 4.92149 5.06700 5.20630 5.33058 5.40256 5.42890 5.59243 5.62377 5.70617 5.74873 5.85758 5.89250 5.94478 6.06711 6.13970 6.16829 6.23576 6.36822 6.42891 6.50232 6.58417 6.67349 6.72413 6.87706 6.88348 7.03575 7.09648 7.18931 7.37411 7.73793 7.77020 8.31519 8.44381 9.56097 10.13642 10.48755 11.48318 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.003588 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.178193 B = 7801.451896 C = 9486.681439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.117 3.883 6 N -0.576 5.576 7 C 0.583 3.417 8 O -0.560 6.560 9 C -0.067 4.067 10 C 0.168 3.832 11 N -0.482 5.482 12 C 0.048 3.952 13 C 0.475 3.525 14 O -0.526 6.526 15 C 0.034 3.966 16 N -0.355 5.355 17 C 0.084 3.916 18 C -0.151 4.151 19 C 0.177 3.823 20 H 0.048 0.952 21 N -0.718 5.718 22 C -0.233 4.233 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.187 0.813 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.195 0.805 42 H 0.081 0.919 43 H 0.129 0.871 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.383 0.617 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.639 16.324 4.520 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.005 4.005 6 N -0.305 5.305 7 C 0.370 3.630 8 O -0.441 6.441 9 C -0.190 4.190 10 C 0.033 3.967 11 N -0.193 5.193 12 C -0.093 4.093 13 C 0.272 3.728 14 O -0.402 6.402 15 C -0.155 4.155 16 N -0.070 5.070 17 C -0.038 4.038 18 C -0.192 4.192 19 C 0.067 3.933 20 H 0.066 0.934 21 N -0.360 5.360 22 C -0.365 4.365 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.734 3.266 27 H -0.207 1.207 28 H -0.221 1.221 29 H -0.220 1.220 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.204 0.796 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.212 0.788 42 H 0.099 0.901 43 H 0.145 0.855 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.219 0.781 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.484 16.143 4.484 19.764 hybrid contribution 0.484 0.130 -0.272 0.570 sum -10.000 16.273 4.212 19.559 Atomic orbital electron populations 1.21853 0.96867 1.00978 1.01321 1.21418 0.94209 0.95788 1.03379 1.21655 0.97548 0.96036 0.96966 0.91664 1.21674 0.98677 0.81549 0.98582 1.47916 1.09606 1.05728 1.67262 1.17192 0.85820 0.82554 0.77476 1.90757 1.13117 1.85493 1.54719 1.20566 0.89293 0.94234 1.14902 1.23140 1.01286 0.83219 0.89090 1.45553 1.09874 1.08498 1.55398 1.22404 0.96094 0.86498 1.04270 1.18853 0.81269 0.92784 0.79852 1.90939 1.69380 1.29961 1.49878 1.25018 1.02227 0.85670 1.02559 1.68003 1.09424 1.26673 1.02921 1.22878 0.77734 1.04519 0.98668 1.22554 1.01598 0.98883 0.96136 1.20247 0.89627 0.90986 0.92458 0.93399 1.42461 1.19103 1.63891 1.10559 1.19256 0.93644 1.26552 0.97019 0.91276 1.24682 0.98483 1.01625 0.96046 1.69661 1.38000 1.48172 1.02241 0.86182 0.84432 0.78855 0.77091 1.20684 1.22100 1.22017 0.93214 0.93402 0.92793 0.90479 0.92051 0.89605 0.90561 0.79600 0.87401 0.89328 0.89351 0.78784 0.90120 0.85455 0.90917 0.93870 0.78137 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.75 5.19 -26.73 -0.14 -1.89 16 3 C -0.10 -1.67 2.12 -90.72 -0.19 -1.86 16 4 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.12 1.97 5.02 -3.94 -0.02 1.95 16 6 N -0.58 -9.49 2.98 -174.25 -0.52 -10.00 16 7 C 0.58 9.05 7.63 -12.45 -0.10 8.96 16 8 O -0.56 -9.47 15.75 5.28 0.08 -9.39 16 9 C -0.07 -0.85 6.54 -83.12 -0.54 -1.39 16 10 C 0.17 1.57 9.96 -16.28 -0.16 1.40 16 11 N -0.48 -4.23 2.97 -126.20 -0.38 -4.61 16 12 C 0.05 0.24 10.64 59.85 0.64 0.88 16 13 C 0.48 5.33 7.46 -14.82 -0.11 5.22 16 14 O -0.53 -7.14 16.49 5.05 0.08 -7.05 16 15 C 0.03 0.37 11.23 -16.72 -0.19 0.19 16 16 N -0.35 -4.53 6.19 -9.34 -0.06 -4.59 16 17 C 0.08 1.41 5.62 -3.71 -0.02 1.39 16 18 C -0.15 -2.58 5.78 -26.61 -0.15 -2.73 16 19 C 0.18 3.33 2.53 -67.89 -0.17 3.16 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -16.57 3.72 -53.38 -0.20 -16.77 16 22 C -0.23 -6.12 9.93 -15.06 -0.15 -6.27 16 23 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.17 13.06 55.49 0.72 -26.44 16 26 Si 0.90 21.93 29.55 -169.99 -5.02 16.90 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 33 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.41 5.71 -51.93 -0.30 1.11 16 36 H 0.08 1.44 6.64 -51.93 -0.34 1.09 16 37 H 0.19 1.32 7.61 -52.48 -0.40 0.92 16 38 H 0.11 0.66 6.94 -51.93 -0.36 0.30 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.20 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.08 1.62 7.74 -51.93 -0.40 1.22 16 43 H 0.13 1.95 3.98 -86.16 -0.34 1.61 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.38 9.50 5.95 -40.82 -0.24 9.26 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -32.39 373.25 -7.61 -40.01 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.91 Total: 9.45 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.05 Total: 6.87 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -0.43 Total: -62.42 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.17 Total: -16.44 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.39 -7.61 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037889874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.666 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds