Wall clock time and date at job start Tue Mar 31 2020 19:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47318 * 2 1 4 4 H 1.08998 * 109.52441 * 54.92121 * 3 2 1 5 5 C 1.52756 * 109.56668 * 294.96583 * 3 2 1 6 6 N 1.46926 * 109.00880 * 185.55063 * 5 3 2 7 7 C 1.34779 * 120.63422 * 233.58388 * 6 5 3 8 8 O 1.21599 * 119.99310 * 7.58784 * 7 6 5 9 9 C 1.47567 * 120.00206 * 187.58924 * 7 6 5 10 10 C 1.38049 * 119.72724 * 189.21139 * 9 7 6 11 11 N 1.34874 * 119.95259 * 179.97438 * 10 9 7 12 12 C 1.46500 * 120.31147 * 180.02562 * 11 10 9 13 13 C 1.34963 * 119.38231 * 0.02562 * 11 10 9 14 14 O 1.21858 * 120.26817 * 180.02562 * 13 11 10 15 15 C 1.41791 * 119.45582 * 0.02562 * 13 11 10 16 16 N 1.30604 * 120.03726 * 359.97082 * 15 13 11 17 17 C 1.46926 * 118.73676 * 53.31438 * 6 5 3 18 18 C 1.53193 * 108.77394 * 306.63750 * 17 6 5 19 19 C 1.53036 * 109.31248 * 54.63823 * 18 17 6 20 20 H 1.09001 * 109.46224 * 178.61276 * 19 18 17 21 21 N 1.46503 * 109.45858 * 58.64112 * 19 18 17 22 22 C 1.36933 * 120.00289 * 85.00354 * 21 19 18 23 23 H 1.08002 * 119.99826 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00348 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99868 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00199 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47199 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47235 * 119.99875 * 26 24 22 29 29 H 1.48495 * 109.47381 * 240.00080 * 26 24 22 30 30 H 1.08992 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46873 * 300.00417 * 1 2 3 32 32 H 1.09004 * 109.46916 * 59.99628 * 1 2 3 33 33 H 1.08997 * 109.47163 * 240.00035 * 2 1 3 34 34 H 1.09004 * 109.46916 * 120.00372 * 2 1 3 35 35 H 1.08999 * 109.50789 * 65.67006 * 5 3 2 36 36 H 1.09001 * 109.43677 * 305.38820 * 5 3 2 37 37 H 1.08004 * 120.02569 * 0.02562 * 10 9 7 38 38 H 1.09000 * 109.47097 * 179.97438 * 12 11 10 39 39 H 1.08998 * 109.47133 * 299.97302 * 12 11 10 40 40 H 1.08997 * 109.47381 * 59.97751 * 12 11 10 41 41 H 1.08002 * 119.97986 * 180.02562 * 15 13 11 42 42 H 1.08994 * 109.59116 * 66.42661 * 17 6 5 43 43 H 1.09005 * 109.58530 * 186.71217 * 17 6 5 44 44 H 1.09003 * 109.49975 * 174.59006 * 18 17 6 45 45 H 1.09001 * 109.49883 * 294.68843 * 18 17 6 46 46 H 0.97001 * 119.99707 * 264.99826 * 21 19 18 47 47 H 0.97003 * 119.99785 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6049 1.9827 0.8407 5 6 1.6378 2.1273 -1.3049 6 7 2.2452 3.4643 -1.3506 7 6 1.4858 4.5566 -1.5671 8 8 0.2739 4.4597 -1.5893 9 6 2.1251 5.8699 -1.7772 10 6 1.3497 7.0116 -1.8080 11 7 1.9293 8.2143 -1.9993 12 6 1.1140 9.4310 -2.0328 13 6 3.2674 8.2866 -2.1595 14 8 3.8079 9.3649 -2.3328 15 6 4.0390 7.0975 -2.1244 16 7 3.4549 5.9444 -1.9378 17 6 3.6954 3.5887 -1.1498 18 6 4.0738 2.8880 0.1589 19 6 3.5653 1.4450 0.1258 20 1 3.8547 0.9368 1.0456 21 7 4.1506 0.7475 -1.0220 22 6 5.3877 0.1705 -0.9145 23 1 5.9323 0.2299 0.0162 24 6 5.9420 -0.4907 -2.0019 25 7 5.2782 -0.5636 -3.1361 26 14 7.6300 -1.2772 -1.8555 27 1 8.1620 -1.0564 -0.4867 28 1 7.5208 -2.7354 -2.1142 29 1 8.5489 -0.6657 -2.8489 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5525 2.2173 -1.3491 36 1 1.9922 1.5359 -2.1491 37 1 0.2797 6.9419 -1.6782 38 1 1.7577 10.2954 -2.1957 39 1 0.3888 9.3602 -2.8434 40 1 0.5889 9.5428 -1.0842 41 1 5.1105 7.1456 -2.2513 42 1 4.2210 3.1188 -1.9810 43 1 3.9675 4.6427 -1.0943 44 1 5.1579 2.8892 0.2720 45 1 3.6194 3.4147 0.9981 46 1 3.6616 0.6944 -1.8580 47 1 5.6654 -1.0260 -3.8958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037889874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:17 Heat of formation + Delta-G solvation = -11.918154 kcal Electronic energy + Delta-G solvation = -29944.984862 eV Core-core repulsion = 25935.732980 eV Total energy + Delta-G solvation = -4009.251882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.07093 -41.26372 -39.36377 -38.51421 -37.21094 -35.73562 -35.24729 -33.36291 -31.78842 -30.95170 -30.09131 -29.27462 -26.92471 -25.79014 -25.48079 -24.92612 -24.63455 -22.13180 -21.62397 -20.04858 -19.75931 -19.23612 -18.49303 -18.14292 -17.60896 -17.19038 -16.65041 -16.60665 -16.15603 -15.95912 -15.74489 -15.49968 -15.25550 -14.87989 -14.72800 -14.56406 -14.41686 -14.31071 -14.07101 -13.76332 -13.52267 -13.43034 -13.19593 -12.91764 -12.84865 -12.60946 -12.59602 -12.26611 -12.11235 -12.03127 -11.79515 -11.76635 -11.53546 -11.41289 -11.25131 -11.07200 -10.85815 -9.96032 -9.65038 -9.27884 -8.85944 -7.85327 -5.10776 -0.61398 0.01952 1.14683 1.50217 1.51307 1.60025 1.69248 2.05118 2.52488 2.62374 2.95717 3.01919 3.47147 3.49313 3.73368 3.87185 3.91976 4.05335 4.11835 4.16589 4.19922 4.35524 4.45848 4.49527 4.51575 4.53067 4.67304 4.69221 4.71405 4.77057 4.87721 4.92754 5.03929 5.12833 5.21200 5.21669 5.29684 5.33973 5.36400 5.43937 5.54142 5.57533 5.65333 5.76781 6.29202 6.36704 6.46536 6.55325 7.09488 7.44044 8.21166 8.44848 9.38237 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.003588 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.178193 B = 7801.451896 C = 9486.681439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.091 4.091 4 H 0.085 0.915 5 C 0.124 3.876 6 N -0.585 5.585 7 C 0.584 3.416 8 O -0.575 6.575 9 C -0.098 4.098 10 C 0.205 3.795 11 N -0.474 5.474 12 C 0.040 3.960 13 C 0.474 3.526 14 O -0.551 6.551 15 C 0.032 3.968 16 N -0.376 5.376 17 C 0.095 3.905 18 C -0.143 4.143 19 C 0.171 3.829 20 H 0.044 0.956 21 N -0.723 5.723 22 C -0.223 4.223 23 H 0.073 0.927 24 C -0.074 4.074 25 N -0.968 5.968 26 Si 0.962 3.038 27 H -0.267 1.267 28 H -0.300 1.300 29 H -0.299 1.299 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.218 0.782 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.209 0.791 42 H 0.039 0.961 43 H 0.150 0.850 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.373 0.627 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.144 18.363 6.084 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.103 0.897 5 C 0.002 3.998 6 N -0.313 5.313 7 C 0.373 3.627 8 O -0.456 6.456 9 C -0.221 4.221 10 C 0.068 3.932 11 N -0.183 5.183 12 C -0.098 4.098 13 C 0.272 3.728 14 O -0.429 6.429 15 C -0.157 4.157 16 N -0.092 5.092 17 C -0.027 4.027 18 C -0.184 4.184 19 C 0.062 3.938 20 H 0.062 0.938 21 N -0.364 5.364 22 C -0.355 4.355 23 H 0.091 0.909 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.793 3.207 27 H -0.192 1.192 28 H -0.228 1.228 29 H -0.226 1.226 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.234 0.766 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.225 0.775 42 H 0.058 0.942 43 H 0.165 0.835 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.206 0.794 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.005 18.228 6.098 22.662 hybrid contribution 0.842 -0.368 -0.735 1.176 sum -11.163 17.860 5.363 21.734 Atomic orbital electron populations 1.21780 0.94481 1.01923 1.02034 1.21339 0.96274 0.95090 1.01647 1.21560 0.95594 0.96519 0.97381 0.89670 1.21499 0.98871 0.81829 0.97644 1.47919 1.09388 1.05932 1.68111 1.17507 0.85638 0.83139 0.76407 1.90736 1.13636 1.85969 1.55294 1.20219 0.89691 0.93949 1.18240 1.23375 1.01989 0.82230 0.85592 1.45707 1.09562 1.09535 1.53446 1.22770 0.95904 0.84219 1.06949 1.18845 0.82168 0.92247 0.79522 1.90933 1.70140 1.30740 1.51083 1.25181 1.02912 0.85158 1.02407 1.67709 1.09959 1.27605 1.03881 1.22745 0.77818 1.05359 0.96742 1.22436 1.00946 0.97725 0.97299 1.20472 0.91333 0.91467 0.90524 0.93846 1.42565 1.18304 1.64128 1.11398 1.19594 0.94402 1.24848 0.96694 0.90862 1.25363 1.01770 1.03355 0.96092 1.69816 1.39484 1.49864 1.02847 0.85220 0.80769 0.77328 0.77349 1.19189 1.22765 1.22639 0.92254 0.91691 0.92948 0.93829 0.92100 0.88884 0.93538 0.76573 0.88417 0.86781 0.86499 0.77492 0.94213 0.83456 0.92093 0.91363 0.79354 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.67 71.98 0.70 -2.98 16 2 C -0.11 -3.35 5.19 30.59 0.16 -3.19 16 3 C -0.09 -2.92 2.12 -10.86 -0.02 -2.95 16 4 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 5 C 0.12 4.21 5.02 86.22 0.43 4.64 16 6 N -0.58 -19.11 2.98 -823.45 -2.45 -21.56 16 7 C 0.58 17.39 7.63 86.70 0.66 18.05 16 8 O -0.57 -18.32 15.75 -4.03 -0.06 -18.38 16 9 C -0.10 -2.31 6.54 41.21 0.27 -2.04 16 10 C 0.20 3.16 9.96 84.18 0.84 4.00 16 11 N -0.47 -6.86 2.97 -671.21 -2.00 -8.85 16 12 C 0.04 0.26 10.64 127.77 1.36 1.62 16 13 C 0.47 9.79 7.46 85.09 0.63 10.42 16 14 O -0.55 -14.22 16.49 -4.86 -0.08 -14.30 16 15 C 0.03 0.66 11.23 85.75 0.96 1.63 16 16 N -0.38 -9.27 6.19 -183.47 -1.14 -10.41 16 17 C 0.10 3.24 5.62 86.36 0.49 3.72 16 18 C -0.14 -4.84 5.78 30.67 0.18 -4.67 16 19 C 0.17 6.44 2.53 45.02 0.11 6.56 16 20 H 0.04 1.68 8.08 -2.39 -0.02 1.66 16 21 N -0.72 -34.44 3.72 -322.81 -1.20 -35.64 16 22 C -0.22 -11.92 9.93 84.03 0.83 -11.08 16 23 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 24 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 25 N -0.97 -58.59 13.06 21.65 0.28 -58.31 16 26 Si 0.96 46.02 29.55 68.60 2.03 48.05 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 29 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.34 6.70 -2.38 -0.02 1.33 16 33 H 0.04 1.67 7.70 -2.39 -0.02 1.66 16 34 H 0.06 1.91 8.14 -2.38 -0.02 1.90 16 35 H 0.09 3.01 5.71 -2.39 -0.01 3.00 16 36 H 0.05 1.85 6.64 -2.39 -0.02 1.83 16 37 H 0.22 2.06 7.61 -2.91 -0.02 2.03 16 38 H 0.10 0.93 6.94 -2.39 -0.02 0.92 16 39 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.21 3.54 8.06 -2.91 -0.02 3.52 16 42 H 0.04 1.67 7.74 -2.39 -0.02 1.65 16 43 H 0.15 4.47 3.98 -69.97 -0.28 4.19 16 44 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.37 19.44 5.95 -92.71 -0.55 18.89 16 47 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -71.94 373.25 3.63 -68.31 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.18 Total: 31.06 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 8.07 Total: 20.04 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -6.50 Total: -134.78 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.14 Total: -32.69 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -71.94 3.63 -68.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037889874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.394 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds