Wall clock time and date at job start Tue Mar 31 2020 19:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 H 1.09004 * 109.52023 * 304.91543 * 3 2 1 5 5 C 1.53194 * 109.49837 * 64.99753 * 3 2 1 6 6 N 1.46927 * 108.89175 * 174.65842 * 5 3 2 7 7 C 1.34773 * 120.63207 * 126.29691 * 6 5 3 8 8 O 1.21592 * 119.99918 * 354.12674 * 7 6 5 9 9 C 1.47568 * 120.00234 * 174.11958 * 7 6 5 10 10 C 1.38052 * 119.73130 * 148.38710 * 9 7 6 11 11 N 1.34873 * 119.95249 * 179.97438 * 10 9 7 12 12 C 1.46500 * 120.30735 * 179.97438 * 11 10 9 13 13 C 1.34957 * 119.38337 * 359.97438 * 11 10 9 14 14 O 1.21866 * 120.26795 * 179.97438 * 13 11 10 15 15 C 1.41794 * 119.45998 * 359.97438 * 13 11 10 16 16 N 1.30605 * 120.03040 * 359.74339 * 15 13 11 17 17 C 1.46925 * 118.73871 * 306.32163 * 6 5 3 18 18 C 1.53195 * 108.77833 * 53.60670 * 17 6 5 19 19 C 1.53033 * 109.31237 * 305.36724 * 18 17 6 20 20 H 1.09001 * 109.46098 * 301.35296 * 19 18 17 21 21 N 1.46505 * 109.46013 * 181.38158 * 19 18 17 22 22 C 1.36934 * 119.99977 * 84.99839 * 21 19 18 23 23 H 1.07996 * 119.99900 * 0.02562 * 22 21 19 24 24 C 1.38807 * 120.00246 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00031 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00492 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46949 * 90.00051 * 26 24 22 28 28 H 1.48494 * 109.47455 * 210.00372 * 26 24 22 29 29 H 1.48501 * 109.46959 * 330.00504 * 26 24 22 30 30 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47313 * 300.00197 * 1 2 3 32 32 H 1.08993 * 109.47251 * 60.00412 * 1 2 3 33 33 H 1.09002 * 109.47313 * 239.99803 * 2 1 3 34 34 H 1.09002 * 109.46980 * 119.99481 * 2 1 3 35 35 H 1.09000 * 109.58233 * 54.80309 * 5 3 2 36 36 H 1.08994 * 109.58662 * 294.51747 * 5 3 2 37 37 H 1.08000 * 120.01890 * 359.97438 * 10 9 7 38 38 H 1.09001 * 109.46776 * 90.00056 * 12 11 10 39 39 H 1.08995 * 109.47226 * 209.99469 * 12 11 10 40 40 H 1.08997 * 109.47402 * 330.00141 * 12 11 10 41 41 H 1.07997 * 119.97934 * 180.02562 * 15 13 11 42 42 H 1.09003 * 109.58690 * 173.39255 * 17 6 5 43 43 H 1.08996 * 109.58955 * 293.81995 * 17 6 5 44 44 H 1.09006 * 109.49374 * 65.31397 * 18 17 6 45 45 H 1.09001 * 109.49926 * 185.37591 * 18 17 6 46 46 H 0.97002 * 119.99824 * 265.00032 * 21 19 18 47 47 H 0.96997 * 120.00501 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9819 -0.8425 5 6 1.6350 2.1280 1.3088 6 7 2.2388 3.4668 1.3512 7 6 1.4764 4.5575 1.5645 8 8 0.2662 4.4524 1.6175 9 6 2.1103 5.8793 1.7338 10 6 1.4489 7.0150 1.3113 11 7 2.0239 8.2254 1.4644 12 6 1.3292 9.4356 1.0184 13 6 3.2451 8.3113 2.0323 14 8 3.7799 9.3966 2.1780 15 6 3.9010 7.1284 2.4579 16 7 3.3214 5.9681 2.3040 17 6 3.6895 3.5940 1.1561 18 6 4.0746 2.8939 -0.1509 19 6 3.5688 1.4499 -0.1196 20 1 4.0019 0.9319 0.7362 21 7 3.9641 0.7674 -1.3543 22 6 5.2032 0.1929 -1.4525 23 1 5.8889 0.2425 -0.6196 24 6 5.5775 -0.4541 -2.6221 25 7 4.7416 -0.5151 -3.6370 26 14 7.2681 -1.2373 -2.7564 27 1 7.1991 -2.6464 -2.2927 28 1 7.7186 -1.2031 -4.1709 29 1 8.2306 -0.4849 -1.9121 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.9907 1.5398 2.1546 36 1 0.5495 2.2151 1.3549 37 1 0.4717 6.9343 0.8586 38 1 0.7201 9.8262 1.8336 39 1 2.0614 10.1859 0.7204 40 1 0.6891 9.1953 0.1696 41 1 4.8783 7.1874 2.9137 42 1 3.9594 4.6486 1.0990 43 1 4.2127 3.1254 1.9895 44 1 3.6225 3.4195 -0.9920 45 1 5.1591 2.8979 -0.2599 46 1 3.3480 0.7226 -2.1022 47 1 5.0032 -0.9669 -4.4544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037889880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:25 Heat of formation + Delta-G solvation = -24.840462 kcal Electronic energy + Delta-G solvation = -29483.764854 eV Core-core repulsion = 25473.952619 eV Total energy + Delta-G solvation = -4009.812235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.03495 -41.22840 -39.28125 -38.48989 -37.14412 -36.09842 -35.23339 -33.43282 -31.83647 -31.04642 -30.10876 -29.30633 -26.96922 -25.84099 -25.33612 -24.94764 -24.07652 -22.20262 -21.58428 -20.73214 -19.82162 -19.08136 -18.62598 -18.12897 -17.65214 -17.27478 -16.79825 -16.54180 -16.23017 -15.70460 -15.59564 -15.53449 -15.29205 -14.88981 -14.70758 -14.54160 -14.45158 -14.33456 -14.12559 -13.71444 -13.52986 -13.46771 -13.07506 -12.98400 -12.82414 -12.73809 -12.50339 -12.48144 -12.15885 -12.10373 -11.88917 -11.79122 -11.54667 -11.48133 -11.25157 -11.05220 -10.84435 -10.41991 -9.71367 -9.32445 -8.92516 -7.88952 -5.15922 -0.58717 0.08790 1.14409 1.50009 1.50398 1.58529 1.62795 1.96898 2.46285 2.59771 2.96158 3.09811 3.42817 3.45085 3.74412 3.81919 3.84841 4.01348 4.08354 4.15032 4.17143 4.31681 4.33861 4.39134 4.46153 4.52807 4.66268 4.67942 4.71142 4.81461 4.84274 4.88844 4.92105 5.02653 5.07168 5.10539 5.20802 5.33969 5.36479 5.40940 5.51642 5.54402 5.61009 5.69623 6.29467 6.32818 6.39566 6.52497 7.04180 7.39473 8.15938 8.39199 9.34518 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.003093 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.273837 B = 9051.143183 C =10452.067004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.091 4.091 4 H 0.055 0.945 5 C 0.125 3.875 6 N -0.590 5.590 7 C 0.590 3.410 8 O -0.570 6.570 9 C -0.095 4.095 10 C 0.191 3.809 11 N -0.476 5.476 12 C 0.045 3.955 13 C 0.470 3.530 14 O -0.553 6.553 15 C 0.033 3.967 16 N -0.374 5.374 17 C 0.124 3.876 18 C -0.143 4.143 19 C 0.178 3.822 20 H 0.047 0.953 21 N -0.730 5.730 22 C -0.229 4.229 23 H 0.076 0.924 24 C -0.076 4.076 25 N -0.970 5.970 26 Si 0.965 3.035 27 H -0.290 1.290 28 H -0.301 1.301 29 H -0.269 1.269 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.212 0.788 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.212 0.788 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.042 0.958 45 H 0.062 0.938 46 H 0.371 0.629 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 17.140 12.796 23.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.111 4.111 4 H 0.073 0.927 5 C 0.003 3.997 6 N -0.320 5.320 7 C 0.378 3.622 8 O -0.451 6.451 9 C -0.218 4.218 10 C 0.055 3.945 11 N -0.184 5.184 12 C -0.094 4.094 13 C 0.268 3.732 14 O -0.432 6.432 15 C -0.155 4.155 16 N -0.090 5.090 17 C 0.001 3.999 18 C -0.184 4.184 19 C 0.070 3.930 20 H 0.065 0.935 21 N -0.369 5.369 22 C -0.361 4.361 23 H 0.094 0.906 24 C -0.268 4.268 25 N -0.621 5.621 26 Si 0.795 3.205 27 H -0.217 1.217 28 H -0.228 1.228 29 H -0.194 1.194 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.229 0.771 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.144 0.856 41 H 0.229 0.771 42 H 0.122 0.878 43 H 0.098 0.902 44 H 0.061 0.939 45 H 0.081 0.919 46 H 0.203 0.797 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.521 16.991 13.148 23.499 hybrid contribution 0.592 -0.002 -1.205 1.343 sum -8.929 16.988 11.942 22.604 Atomic orbital electron populations 1.21774 0.94665 1.01902 1.01882 1.21346 0.96211 0.95062 1.01890 1.21673 0.95498 0.96562 0.97410 0.92687 1.21729 0.99678 0.81265 0.97023 1.47954 1.09063 1.06335 1.68605 1.17492 0.85545 0.83135 0.76054 1.90770 1.14081 1.85968 1.54244 1.20166 0.94918 0.93649 1.13103 1.23421 0.98630 0.82452 0.90012 1.45716 1.17128 1.09238 1.46354 1.22717 0.98669 0.84463 1.03534 1.18976 0.81407 0.92527 0.80255 1.90943 1.64927 1.30262 1.57027 1.25073 1.02864 0.84712 1.02892 1.67858 1.06872 1.28216 1.06077 1.21990 0.78555 1.02570 0.96758 1.22520 1.01043 0.97894 0.96901 1.20490 0.92582 0.91027 0.88906 0.93525 1.42577 1.15445 1.65023 1.13865 1.19584 0.92629 1.25614 0.98226 0.90601 1.25447 1.01487 1.03272 0.96561 1.69813 1.37096 1.50190 1.05050 0.85250 0.80582 0.78416 0.76210 1.21743 1.22754 1.19409 0.92240 0.91480 0.93455 0.93582 0.91753 0.89966 0.88675 0.77139 0.88078 0.88873 0.85591 0.77115 0.87813 0.90201 0.93905 0.91902 0.79742 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.67 71.98 0.70 -3.02 16 2 C -0.11 -3.35 5.32 30.59 0.16 -3.19 16 3 C -0.09 -2.89 1.94 -10.61 -0.02 -2.91 16 4 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 5 C 0.13 3.34 5.33 86.36 0.46 3.80 16 6 N -0.59 -15.63 2.97 -822.62 -2.45 -18.08 16 7 C 0.59 15.27 7.49 86.71 0.65 15.92 16 8 O -0.57 -16.84 16.11 -4.01 -0.06 -16.90 16 9 C -0.09 -1.97 6.00 41.21 0.25 -1.72 16 10 C 0.19 2.74 9.89 84.18 0.83 3.57 16 11 N -0.48 -6.58 2.97 -671.22 -2.00 -8.58 16 12 C 0.05 0.30 10.43 127.77 1.33 1.63 16 13 C 0.47 9.06 7.45 85.09 0.63 9.69 16 14 O -0.55 -13.78 16.74 -4.88 -0.08 -13.86 16 15 C 0.03 0.59 11.23 85.75 0.96 1.56 16 16 N -0.37 -7.64 7.30 -183.47 -1.34 -8.98 16 17 C 0.12 3.24 5.79 86.36 0.50 3.74 16 18 C -0.14 -4.75 5.66 30.67 0.17 -4.57 16 19 C 0.18 6.62 2.21 45.12 0.10 6.72 16 20 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 21 N -0.73 -35.19 4.35 -322.32 -1.40 -36.59 16 22 C -0.23 -12.21 9.93 84.03 0.83 -11.38 16 23 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 24 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 25 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 26 Si 0.97 45.61 29.55 68.60 2.03 47.63 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 28 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 29 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.50 6.69 -2.39 -0.02 1.48 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.80 7.25 -2.39 -0.02 1.78 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.10 2.53 5.71 -2.39 -0.01 2.52 16 37 H 0.21 1.83 7.89 -2.91 -0.02 1.81 16 38 H 0.10 0.41 8.14 -2.39 -0.02 0.40 16 39 H 0.09 0.84 7.46 -2.39 -0.02 0.83 16 40 H 0.13 0.07 8.04 -2.39 -0.02 0.05 16 41 H 0.21 2.76 8.06 -2.91 -0.02 2.73 16 42 H 0.10 2.53 4.82 -2.39 -0.01 2.52 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.37 19.63 7.53 -92.71 -0.70 18.94 16 47 H 0.25 14.68 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -72.31 379.15 3.31 -69.00 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.29 Total: 28.69 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 8.03 Total: 16.05 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -6.90 Total: -130.62 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.15 Total: -30.76 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -72.31 3.31 -69.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037889880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.164 kcal (2) G-P(sol) polarization free energy of solvation -72.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds